Wall clock time and date at job start Tue Mar 31 2020 17:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37999 * 120.82224 * 2 1 4 4 C 1.39120 * 119.26866 * 180.27467 * 3 2 1 5 5 O 1.35498 * 119.52619 * 179.72412 * 4 3 2 6 6 N 1.32441 * 120.94494 * 359.69723 * 4 3 2 7 7 C 1.31631 * 121.80132 * 0.02811 * 6 4 3 8 8 C 1.50701 * 119.68340 * 180.02562 * 7 6 4 9 9 C 1.39557 * 120.62801 * 359.97438 * 7 6 4 10 10 C 1.47618 * 120.49975 * 179.97438 * 9 7 6 11 11 O 1.21582 * 120.00082 * 90.00006 * 10 9 7 12 12 N 1.34775 * 120.00184 * 269.99743 * 10 9 7 13 13 C 1.46497 * 120.00320 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.26026 * 35.32155 * 13 12 10 15 15 C 1.50878 * 109.36749 * 155.00399 * 13 12 10 16 16 C 1.52570 * 109.35827 * 212.07765 * 15 13 12 17 17 C 1.47092 * 114.32633 * 274.98606 * 16 15 13 18 18 C 1.54868 * 110.32051 * 62.79962 * 17 16 15 19 19 N 1.44580 * 109.60245 * 288.73369 * 18 17 16 20 20 C 1.36929 * 118.64288 * 270.70770 * 19 18 17 21 21 H 1.07994 * 120.00435 * 145.31796 * 20 19 18 22 22 C 1.38817 * 120.00059 * 325.31304 * 20 19 18 23 23 N 1.31618 * 120.00131 * 330.03635 * 22 20 19 24 24 Si 1.86804 * 120.00087 * 150.03072 * 22 20 19 25 25 H 1.48494 * 109.47295 * 180.02562 * 24 22 20 26 26 H 1.48496 * 109.46756 * 60.00295 * 24 22 20 27 27 H 1.48501 * 109.46873 * 300.00491 * 24 22 20 28 28 C 1.47596 * 122.70933 * 90.98220 * 19 18 17 29 29 H 1.08995 * 109.47216 * 270.26960 * 1 2 3 30 30 H 1.08998 * 109.47325 * 30.27496 * 1 2 3 31 31 H 1.09002 * 109.46615 * 150.27051 * 1 2 3 32 32 H 1.08006 * 120.36288 * 0.02562 * 3 2 1 33 33 H 0.96698 * 114.00148 * 269.97678 * 5 4 3 34 34 H 1.09003 * 109.46834 * 269.97061 * 8 7 6 35 35 H 1.08993 * 109.47622 * 29.97902 * 8 7 6 36 36 H 1.09005 * 109.46721 * 149.97720 * 8 7 6 37 37 H 0.97003 * 119.99466 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.49363 * 92.10816 * 15 13 12 39 39 H 1.08997 * 109.49112 * 332.04358 * 15 13 12 40 40 H 1.09000 * 108.51222 * 153.73021 * 16 15 13 41 41 H 1.09006 * 108.39117 * 36.15093 * 16 15 13 42 42 H 1.08991 * 109.32672 * 302.54019 * 17 16 15 43 43 H 1.09002 * 109.18810 * 182.97416 * 17 16 15 44 44 H 1.09001 * 109.44591 * 168.69299 * 18 17 16 45 45 H 1.09006 * 109.42502 * 48.76113 * 18 17 16 46 46 H 0.97003 * 119.99901 * 355.10821 * 23 22 20 47 47 H 1.09007 * 108.94966 * 78.29928 * 28 19 18 48 48 H 1.09000 * 108.94673 * 196.92218 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6047 1.1474 -0.0058 5 8 4.3042 2.3078 -0.0115 6 7 4.2547 -0.0066 -0.0053 7 6 3.6205 -1.1600 0.0001 8 6 4.4081 -2.4448 0.0010 9 6 2.2256 -1.2043 0.0061 10 6 1.5172 -2.4994 0.0116 11 8 1.2299 -3.0307 1.0668 12 7 1.1888 -3.0929 -1.1531 13 6 0.4853 -4.3779 -1.1476 14 1 -0.2057 -4.4058 -0.3052 15 6 -0.2878 -4.5304 -2.4343 16 6 -1.5545 -5.3389 -2.1703 17 6 -1.3640 -6.7966 -2.2185 18 6 -0.3830 -7.2478 -1.1084 19 7 0.9567 -6.8178 -1.4409 20 6 1.7464 -7.6495 -2.1890 21 1 2.4443 -7.2352 -2.9014 22 6 1.6498 -9.0254 -2.0318 23 7 1.3081 -9.5321 -0.8661 24 14 2.0048 -10.1576 -3.4745 25 1 1.8322 -11.5699 -3.0496 26 1 3.3998 -9.9465 -3.9378 27 1 1.0640 -9.8562 -4.5833 28 6 1.5104 -5.5219 -1.0022 29 1 -0.3633 0.0048 1.0276 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3632 -0.8924 -0.5096 32 1 1.6935 2.1314 0.0004 33 1 4.5038 2.6424 -0.8965 34 1 4.5940 -2.7576 -1.0265 35 1 5.3586 -2.2880 0.5107 36 1 3.8411 -3.2181 0.5193 37 1 1.4183 -2.6691 -1.9949 38 1 0.3279 -5.0488 -3.1693 39 1 -0.5577 -3.5456 -2.8154 40 1 -2.3024 -5.0628 -2.9136 41 1 -1.9336 -5.0718 -1.1838 42 1 -0.9605 -7.0757 -3.1918 43 1 -2.3256 -7.2886 -2.0721 44 1 -0.4051 -8.3343 -1.0243 45 1 -0.6814 -6.8040 -0.1586 46 1 1.1929 -8.9497 -0.0990 47 1 1.8116 -5.6010 0.0424 48 1 2.3882 -5.2897 -1.6052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034537692.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:39 Heat of formation + Delta-G solvation = -54.197864 kcal Electronic energy + Delta-G solvation = -29655.576910 eV Core-core repulsion = 25709.917553 eV Total energy + Delta-G solvation = -3945.659357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13912 -40.79252 -39.40806 -38.17101 -36.41418 -35.43094 -35.05688 -33.20714 -32.75272 -31.37528 -29.11338 -28.89469 -27.72629 -26.15742 -25.31963 -24.26583 -22.45458 -22.10200 -21.48773 -20.96083 -19.49381 -19.22769 -18.82287 -18.33060 -17.52962 -16.84095 -16.65310 -16.33862 -15.81611 -15.60299 -15.32386 -15.25877 -15.21445 -14.85547 -14.51686 -14.36216 -14.26822 -14.14984 -13.96417 -13.90151 -13.45816 -13.41563 -13.14703 -12.99250 -12.80466 -12.65755 -12.58956 -12.39137 -12.08464 -11.89090 -11.82406 -11.58678 -11.41891 -11.31145 -11.20409 -10.67814 -10.59174 -10.52912 -10.14678 -9.94982 -8.84983 -8.16763 -5.47148 -0.37553 -0.00041 1.34240 1.59573 1.66327 1.85268 1.93499 2.31953 2.51991 2.67338 3.19405 3.32157 3.38925 3.47310 3.65599 3.81189 3.92303 3.96068 4.14451 4.17290 4.24572 4.28224 4.32741 4.35034 4.48962 4.49497 4.50848 4.61249 4.70759 4.76797 4.81088 4.91461 4.94683 4.99916 5.02547 5.04945 5.09511 5.23589 5.26095 5.34413 5.37386 5.40356 5.53136 5.62411 5.94087 6.37817 6.39139 6.52762 6.76378 7.04470 7.15240 7.82409 8.19676 8.94330 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.003030 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.806372 B = 9238.632804 C =10112.349506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.014 3.986 3 C -0.184 4.184 4 C 0.329 3.671 5 O -0.486 6.486 6 N -0.530 5.530 7 C 0.187 3.813 8 C -0.113 4.113 9 C -0.207 4.207 10 C 0.578 3.422 11 O -0.572 6.572 12 N -0.696 5.696 13 C 0.149 3.851 14 H 0.065 0.935 15 C -0.105 4.105 16 C -0.099 4.099 17 C -0.129 4.129 18 C 0.141 3.859 19 N -0.596 5.596 20 C -0.359 4.359 21 H 0.045 0.955 22 C -0.068 4.068 23 N -0.925 5.925 24 Si 1.108 2.892 25 H -0.295 1.295 26 H -0.277 1.277 27 H -0.275 1.275 28 C 0.146 3.854 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.181 0.819 33 H 0.425 0.575 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.415 0.585 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.020 0.980 46 H 0.251 0.749 47 H -0.018 1.018 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.645 24.745 -5.377 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.006 3.994 3 C -0.205 4.205 4 C 0.150 3.850 5 O -0.297 6.297 6 N -0.251 5.251 7 C 0.049 3.951 8 C -0.170 4.170 9 C -0.213 4.213 10 C 0.364 3.636 11 O -0.451 6.451 12 N -0.348 5.348 13 C 0.043 3.957 14 H 0.083 0.917 15 C -0.143 4.143 16 C -0.137 4.137 17 C -0.169 4.169 18 C 0.015 3.985 19 N -0.319 5.319 20 C -0.489 4.489 21 H 0.063 0.937 22 C -0.266 4.266 23 N -0.566 5.566 24 Si 0.933 3.067 25 H -0.221 1.221 26 H -0.203 1.203 27 H -0.201 1.201 28 C 0.020 3.980 29 H 0.103 0.897 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.199 0.801 33 H 0.288 0.712 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.252 0.748 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.039 0.961 46 H 0.060 0.940 47 H 0.000 1.000 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.962 22.852 -4.534 23.380 hybrid contribution -0.138 1.301 0.377 1.361 sum -2.100 24.152 -4.156 24.597 Atomic orbital electron populations 1.21015 0.87657 1.05089 1.04129 1.20489 0.98082 0.90256 0.90599 1.22137 0.93004 1.00173 1.05187 1.19534 0.87895 0.84970 0.92568 1.84689 1.75881 1.32988 1.36138 1.66990 1.42568 0.98382 1.17169 1.21032 0.89324 0.93340 0.91397 1.20854 1.00508 0.91176 1.04466 1.20622 0.94854 0.94117 1.11666 1.18147 0.77527 0.84095 0.83832 1.90830 1.55373 1.66236 1.32668 1.46057 1.58585 1.21586 1.08533 1.21168 0.93293 0.81625 0.99585 0.91717 1.21194 0.96587 1.01026 0.95444 1.20242 0.97136 0.94422 1.01866 1.21213 0.98562 0.97147 0.99982 1.20911 0.84161 0.99129 0.94337 1.43714 1.10166 1.16180 1.61861 1.20053 1.22456 0.90072 1.16325 0.93720 1.27152 0.99479 0.97761 1.02172 1.70908 1.48287 1.37746 0.99635 0.82954 0.76966 0.73897 0.72883 1.22106 1.20288 1.20108 1.21576 0.95227 0.86237 0.94947 0.89741 0.86817 0.91437 0.80127 0.71204 0.88278 0.89110 0.92213 0.74802 0.91893 0.88668 0.90169 0.92950 0.93370 0.91903 0.93853 0.96123 0.93964 0.99982 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 9.69 71.24 0.69 -1.01 16 2 C 0.01 0.25 5.95 -19.43 -0.12 0.14 16 3 C -0.18 -2.81 9.73 22.42 0.22 -2.59 16 4 C 0.33 6.37 7.74 84.81 0.66 7.02 16 5 O -0.49 -7.17 13.55 -87.99 -1.19 -8.36 16 6 N -0.53 -13.16 10.28 -295.90 -3.04 -16.21 16 7 C 0.19 4.83 6.82 42.91 0.29 5.13 16 8 C -0.11 -2.88 9.78 71.24 0.70 -2.19 16 9 C -0.21 -5.16 5.65 -20.00 -0.11 -5.27 16 10 C 0.58 17.30 4.28 86.72 0.37 17.67 16 11 O -0.57 -22.72 16.76 -3.97 -0.07 -22.79 16 12 N -0.70 -18.33 4.98 -446.83 -2.22 -20.55 16 13 C 0.15 4.90 2.27 44.74 0.10 5.00 16 14 H 0.06 2.40 6.75 -2.39 -0.02 2.38 16 15 C -0.10 -2.93 5.07 29.76 0.15 -2.78 16 16 C -0.10 -2.88 5.16 28.61 0.15 -2.73 16 17 C -0.13 -4.80 5.74 29.40 0.17 -4.63 16 18 C 0.14 6.64 4.89 87.38 0.43 7.06 16 19 N -0.60 -29.50 2.01 -697.68 -1.40 -30.90 16 20 C -0.36 -19.71 9.17 84.04 0.77 -18.94 16 21 H 0.05 2.46 7.97 -2.91 -0.02 2.44 16 22 C -0.07 -3.81 4.68 84.86 0.40 -3.41 16 23 N -0.93 -56.56 12.18 21.65 0.26 -56.30 16 24 Si 1.11 50.19 30.01 68.60 2.06 52.25 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 27 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 28 C 0.15 6.36 5.86 86.61 0.51 6.87 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.11 0.79 8.10 -2.39 -0.02 0.77 16 31 H 0.07 1.08 7.18 -2.39 -0.02 1.06 16 32 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.43 1.59 9.06 -74.06 -0.67 0.92 16 34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.06 1.81 7.06 -2.38 -0.02 1.79 16 37 H 0.41 8.23 8.53 -92.71 -0.79 7.43 16 38 H 0.06 2.07 7.49 -2.39 -0.02 2.05 16 39 H 0.09 1.93 7.94 -2.39 -0.02 1.91 16 40 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.05 1.51 7.35 -2.38 -0.02 1.49 16 42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.04 2.37 5.28 -2.39 -0.01 2.36 16 45 H 0.02 0.95 8.06 -2.38 -0.02 0.93 16 46 H 0.25 15.93 7.39 -92.71 -0.69 15.25 16 47 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 48 H 0.05 2.08 7.86 -2.39 -0.02 2.06 16 Total: -1.00 -77.02 384.62 -0.62 -77.65 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.38 Total: 19.88 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 5.37 Total: 5.33 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -6.41 Total: -123.96 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.26 Total: -31.15 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.06 Total: 52.25 kcal Total: -77.02 -0.62 -77.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034537692.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.448 kcal (2) G-P(sol) polarization free energy of solvation -77.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds