Wall clock time and date at job start Tue Mar 31 2020 17:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38354 * 119.45940 * 2 1 4 4 C 1.38351 * 119.30031 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.85225 * 179.97438 * 4 3 2 6 6 C 1.40019 * 118.29200 * 359.97438 * 4 3 2 7 7 C 1.47847 * 120.56260 * 180.02562 * 6 4 3 8 8 O 1.21548 * 120.00303 * 269.98407 * 7 6 4 9 9 N 1.34778 * 119.99497 * 89.97544 * 7 6 4 10 10 C 1.46496 * 119.99608 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47126 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.51130 * 59.99623 * 11 10 9 13 13 C 1.53295 * 109.51069 * 180.10079 * 11 10 9 14 14 N 1.47157 * 108.37952 * 172.22150 * 13 11 10 15 15 C 1.36934 * 120.97840 * 129.48930 * 14 13 11 16 16 H 1.08010 * 120.00089 * 206.21807 * 15 14 13 17 17 C 1.38807 * 120.00403 * 26.21739 * 15 14 13 18 18 N 1.31623 * 119.99976 * 16.92200 * 17 15 14 19 19 Si 1.86802 * 120.00174 * 196.92080 * 17 15 14 20 20 H 1.48501 * 109.47044 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47197 * 119.99846 * 19 17 15 22 22 H 1.48498 * 109.47005 * 239.99854 * 19 17 15 23 23 C 1.47149 * 118.03989 * 309.46229 * 14 13 11 24 24 C 1.53299 * 108.38290 * 50.53472 * 23 14 13 25 25 O 1.42961 * 109.26666 * 307.72517 * 24 23 14 26 26 C 1.39518 * 118.88346 * 0.02562 * 6 4 3 27 27 C 1.50699 * 119.72024 * 180.02562 * 26 6 4 28 28 N 1.31698 * 120.56303 * 0.27405 * 26 6 4 29 29 H 1.08997 * 109.47129 * 89.99993 * 1 2 3 30 30 H 1.09003 * 109.47074 * 210.00108 * 1 2 3 31 31 H 1.09002 * 109.46903 * 329.99707 * 1 2 3 32 32 H 1.08001 * 120.34637 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47279 * 270.02232 * 5 4 3 34 34 H 1.08995 * 109.47226 * 30.02387 * 5 4 3 35 35 H 1.09001 * 109.46922 * 150.01929 * 5 4 3 36 36 H 0.97002 * 120.00317 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47011 * 300.00261 * 10 9 7 38 38 H 1.08999 * 109.47782 * 60.00263 * 10 9 7 39 39 H 1.08995 * 109.68379 * 291.94124 * 13 11 10 40 40 H 1.09002 * 109.68517 * 52.46349 * 13 11 10 41 41 H 0.97002 * 119.99593 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.68456 * 170.25807 * 23 14 13 43 43 H 1.08996 * 109.68321 * 290.77927 * 23 14 13 44 44 H 1.08997 * 109.50832 * 67.62192 * 24 23 14 45 45 H 1.08994 * 109.51397 * 187.77431 * 24 23 14 46 46 H 1.08999 * 109.47508 * 89.99629 * 27 26 6 47 47 H 1.09001 * 109.47231 * 209.99624 * 27 26 6 48 48 H 1.09004 * 109.47210 * 329.99465 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.3474 2.4925 -0.0011 6 6 4.2312 -0.0340 -0.0005 7 6 5.7083 -0.0966 -0.0005 8 8 6.3156 -0.1227 -1.0531 9 7 6.3815 -0.1247 1.1668 10 6 7.8452 -0.1862 1.1668 11 6 8.3547 -0.2080 2.6094 12 1 7.9547 -1.0817 3.1236 13 6 9.8864 -0.2698 2.6105 14 7 10.3566 -0.1008 3.9946 15 6 11.2524 -0.9771 4.5467 16 1 11.2764 -1.1223 5.6167 17 6 12.1295 -1.6788 3.7313 18 7 12.3417 -1.2792 2.4953 19 14 13.0089 -3.1904 4.3880 20 1 12.6012 -3.4275 5.7962 21 1 12.6480 -4.3708 3.5624 22 1 14.4768 -2.9744 4.3278 23 6 9.8364 1.0381 4.7677 24 6 8.3071 1.0363 4.6614 25 8 7.9301 0.9790 3.2835 26 6 3.4717 -1.2043 -0.0005 27 6 4.1628 -2.5435 0.0001 28 7 2.1559 -1.1487 -0.0059 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6443 2.1381 -0.0004 33 1 4.5339 2.8038 -1.0289 34 1 3.7723 3.2624 0.5131 35 1 5.2977 2.3453 0.5121 36 1 5.8969 -0.1041 2.0068 37 1 8.1708 -1.0908 0.6531 38 1 8.2457 0.6876 0.6528 39 1 10.2151 -1.2355 2.2265 40 1 10.2866 0.5290 1.9861 41 1 12.9544 -1.7698 1.9254 42 1 10.1319 0.9385 5.8121 43 1 10.2320 1.9689 4.3614 44 1 7.9069 0.1674 5.1839 45 1 7.9099 1.9467 5.1100 46 1 4.3291 -2.8661 1.0279 47 1 3.5387 -3.2746 -0.5137 48 1 5.1204 -2.4584 -0.5135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035452808.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:32 Heat of formation + Delta-G solvation = -55.953052 kcal Electronic energy + Delta-G solvation = -29002.488893 eV Core-core repulsion = 25056.753426 eV Total energy + Delta-G solvation = -3945.735467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.95533 -40.52742 -39.81379 -36.49040 -35.87753 -35.29248 -34.78406 -33.26459 -32.48421 -30.16909 -29.32457 -28.84622 -28.36612 -26.94162 -25.09043 -23.84500 -23.06320 -22.23705 -21.71758 -21.18727 -19.03771 -18.76942 -18.16452 -17.52178 -17.26034 -16.97169 -16.20221 -16.07071 -15.82100 -15.77542 -15.56325 -15.50272 -15.05489 -14.79804 -14.59502 -14.35009 -14.30921 -14.13276 -13.98822 -13.78888 -13.62959 -13.20873 -13.18176 -13.03203 -13.00334 -12.72768 -12.69318 -12.65740 -12.52380 -12.19619 -12.07921 -11.90114 -11.44313 -11.28164 -10.83065 -10.57586 -10.54394 -10.50084 -10.24456 -9.83414 -8.76935 -7.92649 -5.39972 -0.18216 0.13691 1.37952 1.44893 1.47254 1.57430 1.98779 2.46668 2.55674 2.76085 3.13560 3.22378 3.45619 3.48805 3.59320 3.65113 4.01441 4.02919 4.06344 4.24719 4.31109 4.33071 4.43607 4.47659 4.49513 4.54008 4.57190 4.58174 4.61233 4.66103 4.68598 4.79425 4.82495 4.93867 4.95626 5.05530 5.05925 5.13020 5.17345 5.21174 5.21836 5.24520 5.51641 5.59367 5.65064 6.24401 6.30916 6.36637 6.88498 7.03085 7.04573 7.73175 8.26553 9.13334 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.002652 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.032740 B =10555.064721 C =11080.106274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.139 3.861 3 C -0.176 4.176 4 C -0.006 4.006 5 C -0.122 4.122 6 C -0.208 4.208 7 C 0.577 3.423 8 O -0.574 6.574 9 N -0.697 5.697 10 C 0.142 3.858 11 C 0.077 3.923 12 H 0.064 0.936 13 C 0.160 3.840 14 N -0.614 5.614 15 C -0.264 4.264 16 H 0.074 0.926 17 C -0.051 4.051 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.264 1.264 21 H -0.289 1.289 22 H -0.294 1.294 23 C 0.102 3.898 24 C 0.057 3.943 25 O -0.389 6.389 26 C 0.162 3.838 27 C -0.110 4.110 28 N -0.508 5.508 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.176 0.824 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.413 0.587 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.001 0.999 41 H 0.251 0.749 42 H 0.072 0.928 43 H 0.016 0.984 44 H 0.053 0.947 45 H 0.122 0.878 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.715 5.268 -1.457 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.002 3.998 3 C -0.195 4.195 4 C -0.014 4.014 5 C -0.178 4.178 6 C -0.213 4.213 7 C 0.363 3.637 8 O -0.454 6.454 9 N -0.347 5.347 10 C 0.018 3.982 11 C 0.018 3.982 12 H 0.082 0.918 13 C 0.033 3.967 14 N -0.339 5.339 15 C -0.394 4.394 16 H 0.092 0.908 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.797 3.203 20 H -0.188 1.188 21 H -0.216 1.216 22 H -0.221 1.221 23 C -0.024 4.024 24 C -0.020 4.020 25 O -0.308 6.308 26 C 0.024 3.976 27 C -0.168 4.168 28 N -0.219 5.219 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.193 0.807 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.250 0.750 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.019 0.981 41 H 0.061 0.939 42 H 0.090 0.910 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.139 0.861 46 H 0.114 0.886 47 H 0.110 0.890 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.716 4.563 -2.357 25.244 hybrid contribution 1.855 -0.215 0.413 1.913 sum -22.861 4.347 -1.944 23.352 Atomic orbital electron populations 1.20866 0.85861 1.04876 1.04308 1.22106 0.98887 0.87804 0.91025 1.22107 0.92802 1.00793 1.03844 1.20611 0.94871 0.94179 0.91702 1.20959 0.99697 0.93473 1.03718 1.20588 0.93027 0.95952 1.11713 1.18240 0.87051 0.74964 0.83464 1.90791 1.70383 1.51559 1.32658 1.45835 1.06919 1.73287 1.08701 1.21187 0.79525 1.02433 0.95065 1.22745 0.95701 0.88126 0.91656 0.91768 1.21082 0.89514 1.00221 0.85892 1.44356 1.49875 1.28267 1.11383 1.19572 1.10606 1.16552 0.92652 0.90833 1.25834 0.98382 1.03289 0.97123 1.70186 1.38606 1.40379 1.08939 0.85186 0.77518 0.79339 0.78275 1.18798 1.21575 1.22065 1.21826 0.94423 0.89567 0.96536 1.23079 0.94321 1.02807 0.81805 1.87786 1.77709 1.40998 1.24324 1.21438 0.89356 0.94814 0.92019 1.20828 0.99497 0.92151 1.04274 1.67441 1.08417 1.30466 1.15605 0.89033 0.90503 0.87860 0.80699 0.89866 0.87398 0.92401 0.75030 0.90286 0.91906 0.91432 0.98102 0.93940 0.90954 0.96608 0.92865 0.86066 0.88605 0.88973 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.16 71.24 0.72 -0.28 16 2 C 0.14 2.49 6.78 42.57 0.29 2.78 16 3 C -0.18 -2.82 9.43 22.32 0.21 -2.61 16 4 C -0.01 -0.12 5.95 -19.40 -0.12 -0.23 16 5 C -0.12 -2.21 9.69 71.24 0.69 -1.52 16 6 C -0.21 -5.41 5.65 -19.99 -0.11 -5.52 16 7 C 0.58 17.66 4.35 86.79 0.38 18.03 16 8 O -0.57 -22.18 17.10 -3.87 -0.07 -22.25 16 9 N -0.70 -19.79 5.45 -465.97 -2.54 -22.33 16 10 C 0.14 4.80 5.37 86.38 0.46 5.26 16 11 C 0.08 2.82 2.86 30.70 0.09 2.91 16 12 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 13 C 0.16 7.59 4.73 86.35 0.41 8.00 16 14 N -0.61 -30.28 3.05 -697.54 -2.13 -32.41 16 15 C -0.26 -14.16 9.65 84.03 0.81 -13.34 16 16 H 0.07 3.80 7.88 -2.91 -0.02 3.77 16 17 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 18 N -0.94 -54.82 11.14 21.65 0.24 -54.58 16 19 Si 0.97 44.02 29.59 68.60 2.03 46.05 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 23 C 0.10 4.03 6.74 86.36 0.58 4.62 16 24 C 0.06 1.78 6.98 72.08 0.50 2.29 16 25 O -0.39 -13.29 10.14 -148.98 -1.51 -14.80 16 26 C 0.16 4.07 6.82 42.89 0.29 4.36 16 27 C -0.11 -2.49 9.79 71.24 0.70 -1.79 16 28 N -0.51 -11.88 10.17 -171.05 -1.74 -13.62 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 0.48 8.07 -2.39 -0.02 0.46 16 32 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.11 1.26 8.10 -2.39 -0.02 1.24 16 35 H 0.06 1.28 7.19 -2.39 -0.02 1.26 16 36 H 0.41 10.17 8.34 -92.71 -0.77 9.39 16 37 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 3.60 6.14 -2.39 -0.01 3.58 16 40 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 42 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 43 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 46 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.06 1.62 7.07 -2.39 -0.02 1.60 16 Total: -1.00 -71.86 392.68 0.81 -71.05 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.19 Total: 22.30 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 6.33 Total: 20.58 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -6.16 Total: -122.95 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.58 Total: -37.05 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -71.86 0.81 -71.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035452808.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.100 kcal (2) G-P(sol) polarization free energy of solvation -71.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds