Wall clock time and date at job start Tue Mar 31 2020 17:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35920 * 116.99773 * 2 1 4 4 C 1.38848 * 120.41141 * 0.02562 * 3 2 1 5 5 N 1.31876 * 121.00528 * 179.97438 * 4 3 2 6 6 C 1.31686 * 121.93705 * 359.69703 * 5 4 3 7 7 C 1.39521 * 120.69273 * 0.59459 * 6 5 4 8 8 C 1.47857 * 120.53241 * 179.70052 * 7 6 5 9 9 O 1.21546 * 119.99714 * 234.72738 * 8 7 6 10 10 N 1.34778 * 119.99970 * 54.73014 * 8 7 6 11 11 C 1.46925 * 120.63188 * 355.70535 * 10 8 7 12 12 C 1.53188 * 108.77782 * 126.66525 * 11 10 8 13 13 C 1.53036 * 109.31180 * 54.63275 * 12 11 10 14 14 H 1.09004 * 109.45033 * 58.65222 * 13 12 11 15 15 N 1.46506 * 109.46131 * 178.61345 * 13 12 11 16 16 C 1.36935 * 120.00242 * 275.06994 * 15 13 12 17 17 H 1.08002 * 119.99578 * 0.02562 * 16 15 13 18 18 C 1.38805 * 120.00241 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00038 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00207 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47024 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47393 * 120.00438 * 20 18 16 23 23 H 1.48504 * 109.47226 * 240.00728 * 20 18 16 24 24 C 1.53038 * 109.54203 * 298.63723 * 13 12 11 25 25 H 1.09000 * 109.52422 * 301.39745 * 24 13 12 26 26 C 1.53000 * 109.50303 * 181.31749 * 24 13 12 27 27 C 1.46924 * 120.62912 * 175.98414 * 10 8 7 28 28 C 1.38851 * 120.40336 * 180.02562 * 3 2 1 29 29 C 1.50704 * 120.87656 * 359.97438 * 28 3 2 30 30 H 1.09002 * 109.47624 * 300.00101 * 1 2 3 31 31 H 1.09008 * 109.47358 * 59.99652 * 1 2 3 32 32 H 1.09005 * 109.47504 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.49720 * 359.95671 * 4 3 2 34 34 H 1.08006 * 119.65090 * 180.31557 * 6 5 4 35 35 H 1.08996 * 109.58367 * 246.45885 * 11 10 8 36 36 H 1.09003 * 109.58388 * 6.87748 * 11 10 8 37 37 H 1.09005 * 109.49777 * 294.68344 * 12 11 10 38 38 H 1.09000 * 109.52715 * 174.60206 * 12 11 10 39 39 H 0.97003 * 119.99376 * 95.07176 * 15 13 12 40 40 H 0.96997 * 120.00075 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.46662 * 300.16293 * 26 24 13 42 42 H 1.08997 * 109.46900 * 60.15675 * 26 24 13 43 43 H 1.08996 * 109.47068 * 180.16044 * 26 24 13 44 44 H 1.09006 * 109.58514 * 353.11637 * 27 10 8 45 45 H 1.09000 * 109.58797 * 113.40360 * 27 10 8 46 46 H 1.08991 * 109.47489 * 274.60334 * 29 28 3 47 47 H 1.09001 * 109.47192 * 34.60710 * 29 28 3 48 48 H 1.09002 * 109.46791 * 154.60104 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1953 3.6891 0.0070 7 6 4.0198 2.5636 0.0006 8 6 5.4911 2.7104 0.0006 9 8 6.1557 2.1704 -0.8620 10 7 6.0953 3.4428 0.9572 11 6 5.3009 4.1779 1.9508 12 6 5.7795 3.7863 3.3523 13 6 7.2883 4.0207 3.4557 14 1 7.5074 5.0692 3.2535 15 7 7.7440 3.6785 4.8054 16 6 7.6624 4.6044 5.8110 17 1 7.2617 5.5868 5.6092 18 6 8.0937 4.2800 7.0898 19 7 8.5816 3.0826 7.3358 20 14 7.9817 5.5428 8.4617 21 1 7.4007 6.8016 7.9296 22 1 7.1152 5.0185 9.5477 23 1 9.3399 5.8123 8.9986 24 6 8.0140 3.1419 2.4344 25 1 7.7759 2.0947 2.6205 26 6 9.5242 3.3525 2.5609 27 6 7.5607 3.5262 1.0225 28 6 3.4321 1.2936 -0.0005 29 6 4.2809 0.0483 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2197 2.3226 0.0002 34 1 3.6366 4.6749 0.0124 35 1 5.4348 5.2498 1.8051 36 1 4.2475 3.9207 1.8392 37 1 5.5619 2.7331 3.5300 38 1 5.2650 4.3946 4.0962 39 1 8.1036 2.7960 4.9866 40 1 8.8833 2.8560 8.2294 41 1 9.7616 4.4001 2.3759 42 1 9.8462 3.0790 3.5657 43 1 10.0404 2.7286 1.8314 44 1 7.9984 2.8389 0.2984 45 1 7.8791 4.5444 0.7986 46 1 4.4178 -0.2981 1.0237 47 1 3.7865 -0.7285 -0.5838 48 1 5.2525 0.2710 -0.4418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036075420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:35 Heat of formation + Delta-G solvation = -23.591487 kcal Electronic energy + Delta-G solvation = -29484.827246 eV Core-core repulsion = 25540.495081 eV Total energy + Delta-G solvation = -3944.332165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.34975 -39.96935 -38.33532 -37.64171 -34.71949 -34.01134 -32.97332 -31.53304 -30.95011 -29.36134 -28.18791 -27.94508 -26.44392 -25.24694 -23.83167 -22.66330 -22.59225 -21.67162 -20.18513 -19.30698 -18.14287 -17.74200 -17.12275 -16.75371 -16.45984 -16.20195 -15.94795 -15.04936 -14.98588 -14.43754 -14.24748 -14.10174 -13.88468 -13.75765 -13.37122 -13.26841 -13.08500 -13.01295 -12.78201 -12.47546 -12.34719 -12.24215 -11.97295 -11.88438 -11.69785 -11.60403 -11.20997 -10.97027 -10.83554 -10.67844 -10.44557 -10.33554 -10.18556 -9.78086 -9.67289 -9.63209 -9.48987 -8.94411 -8.71830 -8.55801 -6.99080 -5.80127 -3.08871 0.51208 0.94251 2.43754 2.77876 3.05463 3.40438 3.44001 3.46449 3.48492 4.08064 4.21722 4.35358 4.47301 4.55296 4.60506 4.74482 4.84950 5.00419 5.03446 5.12737 5.20903 5.22952 5.31023 5.33417 5.49397 5.49923 5.53803 5.57647 5.65385 5.73582 5.90078 5.90710 5.96761 6.04462 6.10857 6.18534 6.27846 6.34076 6.40459 6.47644 6.58638 6.77991 6.81558 6.88893 7.01933 7.36688 7.57138 7.66903 8.05353 8.38032 9.49685 10.06770 10.41588 11.42388 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.003035 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.110882 B = 9223.894759 C =10057.023357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.071 3.929 4 C 0.034 3.966 5 N -0.453 5.453 6 C 0.098 3.902 7 C -0.138 4.138 8 C 0.568 3.432 9 O -0.535 6.535 10 N -0.594 5.594 11 C 0.098 3.902 12 C -0.151 4.151 13 C 0.184 3.816 14 H 0.049 0.951 15 N -0.720 5.720 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.904 3.096 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.110 4.110 25 H 0.070 0.930 26 C -0.136 4.136 27 C 0.120 3.880 28 C -0.024 4.024 29 C -0.124 4.124 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.674 -3.423 -16.853 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.024 3.976 4 C -0.124 4.124 5 N -0.162 5.162 6 C -0.061 4.061 7 C -0.143 4.143 8 C 0.354 3.646 9 O -0.413 6.413 10 N -0.326 5.326 11 C -0.025 4.025 12 C -0.192 4.192 13 C 0.074 3.926 14 H 0.067 0.933 15 N -0.360 5.360 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.219 1.219 24 C -0.130 4.130 25 H 0.088 0.912 26 C -0.194 4.194 27 C -0.002 4.002 28 C -0.033 4.033 29 C -0.180 4.180 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.179 0.821 34 H 0.182 0.818 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.762 -3.015 -17.173 22.213 hybrid contribution 0.065 -0.186 1.093 1.111 sum -13.697 -3.201 -16.080 21.364 Atomic orbital electron populations 1.23155 0.77885 1.04537 1.01623 1.86099 1.21604 1.25521 1.88511 1.19714 0.92213 0.86084 0.99629 1.23027 1.00666 0.87066 1.01607 1.67543 1.11705 1.25949 1.11002 1.22841 0.88500 0.98130 0.96627 1.20697 0.95043 0.93943 1.04648 1.17951 0.86365 0.78615 0.81634 1.90755 1.65397 1.48156 1.37006 1.48111 1.07734 1.47622 1.29096 1.22119 0.95200 0.96021 0.89132 1.22686 1.00849 1.02013 0.93665 1.20197 0.90064 0.96443 0.85938 0.93307 1.42413 1.74618 1.15428 1.03586 1.19254 1.34689 0.94277 0.88636 0.91167 1.24727 1.01800 0.96769 0.97575 1.69666 1.48088 1.19386 1.20855 0.86159 0.77191 0.80557 0.82525 1.20568 1.21952 1.21913 1.21746 0.96633 1.00880 0.93730 0.91202 1.21656 0.93905 1.01046 1.02756 1.21783 0.77992 1.02215 0.98197 1.19661 0.90904 0.95474 0.97231 1.20892 1.00223 0.93548 1.03358 0.92222 0.92378 0.87747 0.82137 0.81821 0.90911 0.90211 0.92236 0.90460 0.78217 0.93570 0.92983 0.90699 0.93771 0.89190 0.91186 0.90316 0.90395 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.82 101.05 0.99 1.12 16 2 O -0.31 -2.98 9.75 -19.49 -0.19 -3.17 16 3 C 0.07 0.80 6.68 -39.13 -0.26 0.54 16 4 C 0.03 0.35 10.21 -17.31 -0.18 0.17 16 5 N -0.45 -5.40 10.34 -12.80 -0.13 -5.53 16 6 C 0.10 1.16 8.62 -17.14 -0.15 1.01 16 7 C -0.14 -1.81 4.87 -104.84 -0.51 -2.32 16 8 C 0.57 8.27 6.61 -12.32 -0.08 8.18 16 9 O -0.54 -9.07 14.68 5.32 0.08 -8.99 16 10 N -0.59 -8.20 2.97 -173.88 -0.52 -8.71 16 11 C 0.10 1.28 5.56 -3.71 -0.02 1.26 16 12 C -0.15 -2.49 5.66 -26.62 -0.15 -2.64 16 13 C 0.18 3.37 2.19 -67.89 -0.15 3.22 16 14 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 15 N -0.72 -16.93 4.41 -53.39 -0.24 -17.17 16 16 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.40 13.06 55.49 0.72 -26.67 16 20 Si 0.90 21.86 29.55 -169.99 -5.02 16.83 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C -0.11 -1.75 2.46 -90.50 -0.22 -1.97 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 C -0.14 -2.13 9.02 37.16 0.34 -1.80 16 27 C 0.12 1.67 5.70 -3.71 -0.02 1.65 16 28 C -0.02 -0.30 5.96 -103.75 -0.62 -0.92 16 29 C -0.12 -1.50 9.50 36.01 0.34 -1.15 16 30 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 31 H 0.06 0.24 7.68 -51.92 -0.40 -0.15 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.16 1.16 6.30 -52.49 -0.33 0.83 16 34 H 0.16 1.64 7.41 -52.48 -0.39 1.25 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.97 4.77 -51.93 -0.25 0.72 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.38 9.78 7.50 -40.82 -0.31 9.48 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.39 7.36 -51.93 -0.38 1.01 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.28 7.03 -51.93 -0.37 0.92 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.08 0.84 7.76 -51.93 -0.40 0.44 16 48 H 0.09 1.24 5.75 -51.93 -0.30 0.94 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -31.69 381.11 -7.78 -39.47 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -7.29 Total: 8.71 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -0.94 Total: -0.51 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.16 Total: -58.09 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.11 Total: -12.16 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.69 -7.78 -39.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036075420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.875 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds