Wall clock time and date at job start Tue Mar 31 2020 17:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38364 * 119.40624 * 2 1 4 4 C 1.38328 * 119.45929 * 179.97438 * 3 2 1 5 5 C 1.50691 * 120.82803 * 179.97438 * 4 3 2 6 6 C 1.39995 * 118.34782 * 359.97438 * 4 3 2 7 7 C 1.47518 * 120.59694 * 179.97438 * 6 4 3 8 8 O 1.21589 * 120.00085 * 90.00241 * 7 6 4 9 9 N 1.34771 * 120.00067 * 270.00229 * 7 6 4 10 10 C 1.46930 * 120.63066 * 359.71910 * 9 7 6 11 11 C 1.53626 * 108.54243 * 126.36889 * 10 9 7 12 12 C 1.53041 * 109.24336 * 54.85882 * 11 10 9 13 13 H 1.09002 * 109.45932 * 58.52762 * 12 11 10 14 14 N 1.46499 * 109.46210 * 178.49210 * 12 11 10 15 15 C 1.36934 * 119.99698 * 275.06749 * 14 12 11 16 16 H 1.08006 * 120.00241 * 359.97438 * 15 14 12 17 17 C 1.38809 * 120.00181 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00240 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99919 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47167 * 89.99868 * 19 17 15 21 21 H 1.48499 * 109.47036 * 210.00077 * 19 17 15 22 22 H 1.48500 * 109.46528 * 330.00050 * 19 17 15 23 23 C 1.53045 * 109.53583 * 298.51374 * 12 11 10 24 24 H 1.09001 * 109.49253 * 301.40607 * 23 12 11 25 25 C 1.52996 * 109.49608 * 181.31778 * 23 12 11 26 26 C 1.46930 * 120.63406 * 180.02562 * 9 7 6 27 27 C 1.40280 * 118.80544 * 0.02562 * 6 4 3 28 28 O 1.35427 * 119.80001 * 179.97438 * 27 6 4 29 29 N 1.31875 * 119.40678 * 179.72181 * 2 1 3 30 30 H 1.09002 * 109.47152 * 90.00124 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.00225 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.00206 * 1 2 3 33 33 H 1.08001 * 120.26738 * 359.95091 * 3 2 1 34 34 H 1.09004 * 109.47473 * 89.99409 * 5 4 3 35 35 H 1.08997 * 109.47343 * 209.99377 * 5 4 3 36 36 H 1.08996 * 109.47022 * 329.99993 * 5 4 3 37 37 H 1.08999 * 109.58741 * 246.20069 * 10 9 7 38 38 H 1.09000 * 109.58758 * 6.62848 * 10 9 7 39 39 H 1.08996 * 109.63141 * 294.86744 * 11 10 9 40 40 H 1.08998 * 109.45785 * 174.74112 * 11 10 9 41 41 H 0.96994 * 120.00439 * 95.06431 * 14 12 11 42 42 H 0.97005 * 120.00042 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.47461 * 300.15968 * 25 23 12 44 44 H 1.09000 * 109.47401 * 60.15610 * 25 23 12 45 45 H 1.09005 * 109.47350 * 180.15426 * 25 23 12 46 46 H 1.09000 * 109.58454 * 353.37134 * 26 9 7 47 47 H 1.08996 * 109.58991 * 113.79840 * 26 9 7 48 48 H 0.96702 * 114.00173 * 90.00101 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2054 0.0000 4 6 3.5697 1.2067 0.0005 5 6 4.3407 2.5014 0.0000 6 6 4.2355 -0.0248 0.0016 7 6 5.7096 -0.0813 0.0017 8 8 6.3172 -0.1038 1.0547 9 7 6.3830 -0.1081 -1.1655 10 6 5.6627 -0.0878 -2.4459 11 6 6.2154 1.0640 -3.2991 12 6 7.7320 0.9092 -3.4339 13 1 7.9595 -0.0541 -3.8904 14 7 8.2595 1.9852 -4.2767 15 6 8.2552 1.8519 -5.6395 16 1 7.8634 0.9535 -6.0931 17 6 8.7545 2.8716 -6.4382 18 7 8.7509 2.7433 -7.7481 19 14 9.4316 4.4259 -5.6538 20 1 10.8835 4.2565 -5.3925 21 1 9.2246 5.5744 -6.5721 22 1 8.7248 4.6823 -4.3732 23 6 8.3791 0.9826 -2.0489 24 1 8.1314 1.9357 -1.5818 25 6 9.8978 0.8606 -2.1878 26 6 7.8511 -0.1650 -1.1817 27 6 3.4758 -1.2040 0.0016 28 8 4.0991 -2.4063 0.0021 29 7 2.1545 -1.1488 0.0056 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 0.8900 0.5138 32 1 -0.3633 -0.8900 0.5139 33 1 1.6411 2.1376 -0.0008 34 1 4.5262 2.8143 1.0275 35 1 5.2915 2.3578 -0.5133 36 1 3.7622 3.2685 -0.5146 37 1 5.8125 -1.0347 -2.9645 38 1 4.5992 0.0677 -2.2645 39 1 5.9881 2.0163 -2.8201 40 1 5.7575 1.0356 -4.2878 41 1 8.6117 2.7919 -3.8694 42 1 9.0995 3.4561 -8.3062 43 1 10.1446 -0.0921 -2.6564 44 1 10.2730 1.6769 -2.8050 45 1 10.3581 0.9101 -1.2009 46 1 8.2320 -0.0605 -0.1657 47 1 8.1753 -1.1181 -1.5994 48 1 4.2798 -2.7553 0.8856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036126677.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:20 Heat of formation + Delta-G solvation = -31.786890 kcal Electronic energy + Delta-G solvation = -29911.922351 eV Core-core repulsion = 25967.234807 eV Total energy + Delta-G solvation = -3944.687544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.31079 -39.71325 -37.78199 -37.57049 -34.84315 -34.43277 -32.89435 -32.02615 -31.58835 -29.91322 -28.83803 -27.87468 -26.40290 -25.16398 -23.55499 -22.63098 -21.86981 -21.55973 -20.24282 -19.39451 -18.68610 -17.68286 -17.54137 -17.23854 -16.34765 -15.79678 -15.10005 -14.80830 -14.73598 -14.51734 -14.33230 -13.91484 -13.77953 -13.58960 -13.34669 -13.30628 -13.23310 -12.88918 -12.69568 -12.55199 -12.44545 -12.28004 -12.12980 -11.93736 -11.89242 -11.80403 -11.47132 -11.07878 -10.93718 -10.75058 -10.57897 -10.36066 -10.24661 -9.82721 -9.79927 -9.62175 -9.58255 -9.06904 -8.94754 -8.60207 -7.31536 -5.81280 -3.16951 0.50743 0.81514 2.42939 2.91148 3.05609 3.33118 3.36023 3.41768 3.42715 4.12031 4.23616 4.36073 4.54628 4.69143 4.87304 4.95839 4.97671 5.01594 5.09664 5.14638 5.21142 5.23656 5.29255 5.30935 5.41833 5.52419 5.55053 5.57044 5.63685 5.65756 5.76279 5.81089 5.87698 5.91997 5.99682 6.07818 6.16027 6.24337 6.24729 6.35654 6.45393 6.63674 6.73464 6.89595 7.15490 7.34574 7.57762 7.94365 8.03532 8.37717 9.15851 9.88487 10.08320 11.37011 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.003353 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.734556 B = 8348.494841 C = 9018.860133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.166 3.834 3 C -0.185 4.185 4 C 0.012 3.988 5 C -0.126 4.126 6 C -0.194 4.194 7 C 0.577 3.423 8 O -0.542 6.542 9 N -0.592 5.592 10 C 0.110 3.890 11 C -0.150 4.150 12 C 0.189 3.811 13 H 0.058 0.942 14 N -0.744 5.744 15 C -0.242 4.242 16 H 0.090 0.910 17 C 0.006 3.994 18 N -0.933 5.933 19 Si 0.882 3.118 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.278 1.278 23 C -0.113 4.113 24 H 0.068 0.932 25 C -0.137 4.137 26 C 0.120 3.880 27 C 0.352 3.648 28 O -0.475 6.475 29 N -0.506 5.506 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.361 0.639 42 H 0.259 0.741 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.046 0.954 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.251 -4.660 18.717 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.205 4.205 4 C 0.004 3.996 5 C -0.182 4.182 6 C -0.201 4.201 7 C 0.363 3.637 8 O -0.421 6.421 9 N -0.323 5.323 10 C -0.013 4.013 11 C -0.191 4.191 12 C 0.079 3.921 13 H 0.076 0.924 14 N -0.386 5.386 15 C -0.372 4.372 16 H 0.108 0.892 17 C -0.190 4.190 18 N -0.581 5.581 19 Si 0.712 3.288 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.133 4.133 24 H 0.087 0.913 25 C -0.195 4.195 26 C -0.002 4.002 27 C 0.173 3.827 28 O -0.282 6.282 29 N -0.226 5.226 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.163 0.837 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.194 0.806 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -13.353 -5.513 18.399 23.393 hybrid contribution 0.910 1.796 0.708 2.134 sum -12.443 -3.717 19.107 23.103 Atomic orbital electron populations 1.20800 0.88109 1.03808 1.03658 1.21168 0.96986 0.87034 0.91997 1.21795 0.93605 0.99693 1.05423 1.20274 0.93677 0.94225 0.91376 1.20965 1.00505 0.93106 1.03640 1.20828 0.95032 0.94138 1.10057 1.17787 0.86032 0.76044 0.83813 1.90782 1.69270 1.51050 1.30963 1.48112 1.07365 1.71021 1.05823 1.21930 0.95725 1.00322 0.83313 1.22736 1.00027 0.96616 0.99728 1.20173 0.89993 0.93163 0.88788 0.92387 1.42762 1.74589 1.17596 1.03668 1.19052 1.34631 1.03156 0.80388 0.89197 1.24653 1.01191 0.98025 0.95105 1.69696 1.51990 1.33856 1.02543 0.86595 0.79263 0.84485 0.78425 1.21063 1.21803 1.20412 1.21799 0.96478 0.98199 0.96857 0.91332 1.21667 0.93984 1.03099 1.00742 1.21754 0.78017 0.98876 1.01582 1.18969 0.86341 0.84368 0.93068 1.84704 1.76681 1.32679 1.34152 1.67041 1.09057 1.30428 1.16063 0.89772 0.90219 0.90157 0.83747 0.89668 0.90437 0.89943 0.90945 0.90951 0.92317 0.90032 0.80643 0.93051 0.92449 0.91422 0.93494 0.89143 0.91036 0.73634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.16 36.01 0.37 -0.31 16 2 C 0.17 1.64 6.78 -82.53 -0.56 1.08 16 3 C -0.19 -1.70 9.41 -39.50 -0.37 -2.07 16 4 C 0.01 0.14 5.82 -103.94 -0.60 -0.47 16 5 C -0.13 -1.25 9.69 36.00 0.35 -0.90 16 6 C -0.19 -2.51 3.65 -104.69 -0.38 -2.90 16 7 C 0.58 8.41 5.30 -12.48 -0.07 8.35 16 8 O -0.54 -9.24 16.52 5.29 0.09 -9.15 16 9 N -0.59 -8.30 2.97 -173.71 -0.52 -8.81 16 10 C 0.11 1.53 6.37 -3.48 -0.02 1.50 16 11 C -0.15 -2.41 5.67 -26.38 -0.15 -2.56 16 12 C 0.19 3.35 2.19 -67.89 -0.15 3.21 16 13 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 14 N -0.74 -16.46 4.22 -53.38 -0.23 -16.69 16 15 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 16 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 17 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 18 N -0.93 -28.64 13.97 55.49 0.78 -27.86 16 19 Si 0.88 21.53 27.74 -169.99 -4.71 16.81 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.38 6.52 56.52 0.37 -6.02 16 23 C -0.11 -1.71 2.46 -90.48 -0.22 -1.93 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 25 C -0.14 -2.01 9.02 37.16 0.34 -1.67 16 26 C 0.12 1.65 5.72 -3.69 -0.02 1.63 16 27 C 0.35 4.51 7.77 -16.61 -0.13 4.38 16 28 O -0.47 -5.64 13.01 -17.97 -0.23 -5.88 16 29 N -0.51 -6.22 10.28 -9.21 -0.09 -6.31 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.92 7.19 -51.93 -0.37 0.55 16 36 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.97 6.23 -51.93 -0.32 0.65 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.36 7.98 5.37 -40.82 -0.22 7.76 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 1.13 7.36 -51.93 -0.38 0.74 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.40 3.11 9.06 45.56 0.41 3.52 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -33.80 387.66 -7.71 -41.51 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.75 Total: 9.78 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.88 Total: 0.75 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.06 Total: -59.67 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.15 Total: -15.03 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.80 -7.71 -41.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036126677.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.722 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds