Wall clock time and date at job start Tue Mar 31 2020 17:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38364 * 119.40624 * 2 1 4 4 C 1.38328 * 119.45929 * 179.97438 * 3 2 1 5 5 C 1.50691 * 120.82803 * 179.97438 * 4 3 2 6 6 C 1.39995 * 118.34782 * 359.97438 * 4 3 2 7 7 C 1.47518 * 120.59694 * 179.97438 * 6 4 3 8 8 O 1.21589 * 120.00085 * 90.00241 * 7 6 4 9 9 N 1.34771 * 120.00067 * 270.00229 * 7 6 4 10 10 C 1.46930 * 120.63066 * 359.71910 * 9 7 6 11 11 C 1.53626 * 108.54243 * 126.36889 * 10 9 7 12 12 C 1.53041 * 109.24336 * 54.85882 * 11 10 9 13 13 H 1.09002 * 109.45932 * 58.52762 * 12 11 10 14 14 N 1.46499 * 109.46210 * 178.49210 * 12 11 10 15 15 C 1.36934 * 119.99698 * 275.06749 * 14 12 11 16 16 H 1.08006 * 120.00241 * 359.97438 * 15 14 12 17 17 C 1.38809 * 120.00181 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00240 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99919 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47167 * 89.99868 * 19 17 15 21 21 H 1.48499 * 109.47036 * 210.00077 * 19 17 15 22 22 H 1.48500 * 109.46528 * 330.00050 * 19 17 15 23 23 C 1.53045 * 109.53583 * 298.51374 * 12 11 10 24 24 H 1.09001 * 109.49253 * 301.40607 * 23 12 11 25 25 C 1.52996 * 109.49608 * 181.31778 * 23 12 11 26 26 C 1.46930 * 120.63406 * 180.02562 * 9 7 6 27 27 C 1.40280 * 118.80544 * 0.02562 * 6 4 3 28 28 O 1.35427 * 119.80001 * 179.97438 * 27 6 4 29 29 N 1.31875 * 119.40678 * 179.72181 * 2 1 3 30 30 H 1.09002 * 109.47152 * 90.00124 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.00225 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.00206 * 1 2 3 33 33 H 1.08001 * 120.26738 * 359.95091 * 3 2 1 34 34 H 1.09004 * 109.47473 * 89.99409 * 5 4 3 35 35 H 1.08997 * 109.47343 * 209.99377 * 5 4 3 36 36 H 1.08996 * 109.47022 * 329.99993 * 5 4 3 37 37 H 1.08999 * 109.58741 * 246.20069 * 10 9 7 38 38 H 1.09000 * 109.58758 * 6.62848 * 10 9 7 39 39 H 1.08996 * 109.63141 * 294.86744 * 11 10 9 40 40 H 1.08998 * 109.45785 * 174.74112 * 11 10 9 41 41 H 0.96994 * 120.00439 * 95.06431 * 14 12 11 42 42 H 0.97005 * 120.00042 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.47461 * 300.15968 * 25 23 12 44 44 H 1.09000 * 109.47401 * 60.15610 * 25 23 12 45 45 H 1.09005 * 109.47350 * 180.15426 * 25 23 12 46 46 H 1.09000 * 109.58454 * 353.37134 * 26 9 7 47 47 H 1.08996 * 109.58991 * 113.79840 * 26 9 7 48 48 H 0.96702 * 114.00173 * 90.00101 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2054 0.0000 4 6 3.5697 1.2067 0.0005 5 6 4.3407 2.5014 0.0000 6 6 4.2355 -0.0248 0.0016 7 6 5.7096 -0.0813 0.0017 8 8 6.3172 -0.1038 1.0547 9 7 6.3830 -0.1081 -1.1655 10 6 5.6627 -0.0878 -2.4459 11 6 6.2154 1.0640 -3.2991 12 6 7.7320 0.9092 -3.4339 13 1 7.9595 -0.0541 -3.8904 14 7 8.2595 1.9852 -4.2767 15 6 8.2552 1.8519 -5.6395 16 1 7.8634 0.9535 -6.0931 17 6 8.7545 2.8716 -6.4382 18 7 8.7509 2.7433 -7.7481 19 14 9.4316 4.4259 -5.6538 20 1 10.8835 4.2565 -5.3925 21 1 9.2246 5.5744 -6.5721 22 1 8.7248 4.6823 -4.3732 23 6 8.3791 0.9826 -2.0489 24 1 8.1314 1.9357 -1.5818 25 6 9.8978 0.8606 -2.1878 26 6 7.8511 -0.1650 -1.1817 27 6 3.4758 -1.2040 0.0016 28 8 4.0991 -2.4063 0.0021 29 7 2.1545 -1.1488 0.0056 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 0.8900 0.5138 32 1 -0.3633 -0.8900 0.5139 33 1 1.6411 2.1376 -0.0008 34 1 4.5262 2.8143 1.0275 35 1 5.2915 2.3578 -0.5133 36 1 3.7622 3.2685 -0.5146 37 1 5.8125 -1.0347 -2.9645 38 1 4.5992 0.0677 -2.2645 39 1 5.9881 2.0163 -2.8201 40 1 5.7575 1.0356 -4.2878 41 1 8.6117 2.7919 -3.8694 42 1 9.0995 3.4561 -8.3062 43 1 10.1446 -0.0921 -2.6564 44 1 10.2730 1.6769 -2.8050 45 1 10.3581 0.9101 -1.2009 46 1 8.2320 -0.0605 -0.1657 47 1 8.1753 -1.1181 -1.5994 48 1 4.2798 -2.7553 0.8856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036126677.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:19 Heat of formation + Delta-G solvation = -57.120143 kcal Electronic energy + Delta-G solvation = -29913.020883 eV Core-core repulsion = 25967.234807 eV Total energy + Delta-G solvation = -3945.786076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.24123 -40.79880 -39.06795 -38.43526 -36.32855 -35.36806 -34.39236 -33.25100 -32.76974 -31.55781 -29.71232 -28.58465 -27.56202 -26.65814 -24.65034 -23.99493 -23.07845 -22.64951 -21.51495 -20.63866 -19.52897 -19.48059 -18.57985 -18.26280 -17.46723 -16.80426 -16.66002 -16.06915 -15.91129 -15.72775 -15.33823 -15.15512 -14.93887 -14.80110 -14.52831 -14.24935 -14.20392 -13.98708 -13.94748 -13.76193 -13.47453 -13.26260 -13.09986 -12.96204 -12.94158 -12.85057 -12.83810 -12.64245 -12.48476 -12.17722 -12.02185 -11.90599 -11.77259 -11.39855 -11.21126 -10.95092 -10.62512 -10.49468 -9.85670 -9.80073 -9.28404 -7.99663 -5.32264 -0.31288 0.01226 1.32083 1.38422 1.40959 1.48087 1.83616 2.28060 2.49791 2.60551 3.19552 3.31659 3.47492 3.52217 3.53548 3.72933 3.91131 3.95472 3.96342 4.15923 4.19300 4.26177 4.29463 4.43120 4.48875 4.51812 4.56404 4.60164 4.69455 4.73504 4.78118 4.81429 4.87140 4.93791 4.98049 5.00367 5.07795 5.13868 5.17225 5.21198 5.35142 5.40491 5.49554 5.55503 5.79998 6.20456 6.24138 6.40364 6.78371 6.91029 7.10304 7.86226 8.05516 9.21982 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.003353 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.734556 B = 8348.494841 C = 9018.860133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.161 3.839 3 C -0.177 4.177 4 C 0.005 3.995 5 C -0.124 4.124 6 C -0.216 4.216 7 C 0.583 3.417 8 O -0.570 6.570 9 N -0.592 5.592 10 C 0.123 3.877 11 C -0.139 4.139 12 C 0.184 3.816 13 H 0.046 0.954 14 N -0.745 5.745 15 C -0.220 4.220 16 H 0.058 0.942 17 C -0.062 4.062 18 N -0.985 5.985 19 Si 0.949 3.051 20 H -0.280 1.280 21 H -0.300 1.300 22 H -0.253 1.253 23 C -0.101 4.101 24 H 0.069 0.931 25 C -0.135 4.135 26 C 0.124 3.876 27 C 0.342 3.658 28 O -0.488 6.488 29 N -0.527 5.527 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.180 0.820 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.364 0.636 42 H 0.256 0.744 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.629 -3.577 21.015 25.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.024 3.976 3 C -0.196 4.196 4 C -0.003 4.003 5 C -0.180 4.180 6 C -0.223 4.223 7 C 0.370 3.630 8 O -0.450 6.450 9 N -0.322 5.322 10 C 0.000 4.000 11 C -0.180 4.180 12 C 0.075 3.925 13 H 0.064 0.936 14 N -0.387 5.387 15 C -0.351 4.351 16 H 0.076 0.924 17 C -0.253 4.253 18 N -0.636 5.636 19 Si 0.777 3.223 20 H -0.207 1.207 21 H -0.227 1.227 22 H -0.178 1.178 23 C -0.121 4.121 24 H 0.087 0.913 25 C -0.193 4.193 26 C 0.002 3.998 27 C 0.162 3.838 28 O -0.298 6.298 29 N -0.248 5.248 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.198 0.802 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.197 0.803 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -14.750 -4.461 20.762 25.856 hybrid contribution 1.239 1.347 0.026 1.830 sum -13.511 -3.115 20.788 24.988 Atomic orbital electron populations 1.20930 0.85552 1.05107 1.04584 1.21854 0.98663 0.86690 0.90427 1.22160 0.92850 1.00919 1.03713 1.20526 0.94696 0.93870 0.91164 1.20986 0.99685 0.93236 1.04084 1.20772 0.93902 0.95185 1.12442 1.18005 0.86768 0.74963 0.83232 1.90756 1.70130 1.52346 1.31816 1.48122 1.07443 1.70852 1.05799 1.21765 0.96053 0.99319 0.82858 1.22520 0.98368 0.97829 0.99245 1.20371 0.91202 0.91216 0.89665 0.93586 1.42726 1.74920 1.18808 1.02233 1.18984 1.32215 1.01488 0.82446 0.92395 1.25407 1.02710 1.01727 0.95498 1.69876 1.54326 1.35053 1.04336 0.85498 0.78735 0.79842 0.78214 1.20656 1.22677 1.17752 1.21664 0.96691 0.98850 0.94932 0.91290 1.21642 0.93555 1.02244 1.01835 1.21719 0.78008 0.98689 1.01390 1.19077 0.86732 0.84429 0.93517 1.84651 1.76787 1.32736 1.35607 1.67123 1.08794 1.31837 1.17062 0.88827 0.87444 0.90387 0.80232 0.89007 0.92563 0.87689 0.90677 0.90063 0.91985 0.91941 0.80274 0.93515 0.92449 0.93409 0.90979 0.88843 0.90060 0.72046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.16 71.24 0.72 -0.27 16 2 C 0.16 2.78 6.78 42.58 0.29 3.07 16 3 C -0.18 -2.69 9.41 22.32 0.21 -2.48 16 4 C 0.01 0.11 5.82 -19.42 -0.11 -0.01 16 5 C -0.12 -2.17 9.69 71.23 0.69 -1.48 16 6 C -0.22 -5.36 3.65 -19.91 -0.07 -5.43 16 7 C 0.58 16.45 5.30 86.69 0.46 16.91 16 8 O -0.57 -19.00 16.52 -4.00 -0.07 -19.07 16 9 N -0.59 -15.93 2.97 -821.77 -2.44 -18.37 16 10 C 0.12 3.30 6.37 86.51 0.55 3.85 16 11 C -0.14 -4.38 5.67 30.82 0.17 -4.21 16 12 C 0.18 6.44 2.19 45.02 0.10 6.54 16 13 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 14 N -0.74 -32.58 4.22 -322.80 -1.36 -33.94 16 15 C -0.22 -12.00 10.41 84.03 0.87 -11.12 16 16 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 17 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 18 N -0.98 -62.14 13.97 21.65 0.30 -61.84 16 19 Si 0.95 44.50 27.74 68.60 1.90 46.41 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 21 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 22 H -0.25 -10.66 6.52 99.48 0.65 -10.01 16 23 C -0.10 -2.91 2.46 -10.70 -0.03 -2.94 16 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 25 C -0.13 -3.73 9.02 71.98 0.65 -3.09 16 26 C 0.12 3.24 5.72 86.37 0.49 3.74 16 27 C 0.34 8.47 7.77 85.13 0.66 9.13 16 28 O -0.49 -11.44 13.01 -87.22 -1.14 -12.58 16 29 N -0.53 -12.27 10.28 -296.05 -3.04 -15.31 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.11 0.44 8.07 -2.39 -0.02 0.42 16 32 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.24 7.19 -2.39 -0.02 1.22 16 36 H 0.10 1.33 8.10 -2.39 -0.02 1.31 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.08 2.09 6.23 -2.39 -0.01 2.07 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.36 15.53 5.37 -92.71 -0.50 15.03 16 42 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 43 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.05 1.52 7.36 -2.39 -0.02 1.50 16 45 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 46 H 0.09 2.46 7.00 -2.39 -0.02 2.45 16 47 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.42 6.40 9.06 -74.06 -0.67 5.73 16 Total: -1.00 -74.41 387.66 0.05 -74.36 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -0.24 Total: 31.24 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 6.13 Total: 9.10 kcal Atomic # 7 Polarization: -122.92 SS G_CDS: -6.54 Total: -129.46 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -1.20 Total: -31.65 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.90 Total: 46.41 kcal Total: -74.41 0.05 -74.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036126677.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.242 kcal (2) G-P(sol) polarization free energy of solvation -74.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds