Wall clock time and date at job start Tue Mar 31 2020 18:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40200 * 120.37078 * 2 1 4 4 C 1.35349 * 119.95034 * 179.76438 * 3 2 1 5 5 N 1.35766 * 120.70071 * 0.52050 * 4 3 2 6 6 C 1.46499 * 119.62049 * 179.75573 * 5 4 3 7 7 C 1.50696 * 109.47199 * 269.72297 * 6 5 4 8 8 O 1.21281 * 120.00157 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00064 * 180.02562 * 7 6 5 10 10 C 1.46924 * 120.63155 * 0.02562 * 9 7 6 11 11 C 1.53186 * 108.77784 * 126.36930 * 10 9 7 12 12 C 1.53046 * 109.31216 * 54.63720 * 11 10 9 13 13 H 1.08998 * 109.44528 * 178.62064 * 12 11 10 14 14 N 1.46496 * 109.45966 * 58.65191 * 12 11 10 15 15 C 1.36945 * 119.99718 * 84.93473 * 14 12 11 16 16 H 1.07997 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99878 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.53040 * 109.53260 * 298.63315 * 12 11 10 24 24 H 1.08994 * 109.50376 * 301.40924 * 23 12 11 25 25 C 1.53004 * 109.49449 * 181.34701 * 23 12 11 26 26 C 1.46932 * 120.63006 * 180.02562 * 9 7 6 27 27 C 1.34655 * 120.75134 * 359.47902 * 5 4 3 28 28 O 1.22060 * 119.98857 * 180.28054 * 27 5 4 29 29 C 1.36403 * 120.36743 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47479 * 269.97464 * 1 2 3 31 31 H 1.09000 * 109.46960 * 29.97426 * 1 2 3 32 32 H 1.09006 * 109.47119 * 149.97278 * 1 2 3 33 33 H 1.07998 * 120.02026 * 0.02562 * 3 2 1 34 34 H 1.08005 * 119.64788 * 180.27571 * 4 3 2 35 35 H 1.09000 * 109.46967 * 149.72411 * 6 5 4 36 36 H 1.09000 * 109.47426 * 29.72853 * 6 5 4 37 37 H 1.09000 * 109.58765 * 246.16184 * 10 9 7 38 38 H 1.09002 * 109.58532 * 6.43596 * 10 9 7 39 39 H 1.09002 * 109.49818 * 294.68368 * 11 10 9 40 40 H 1.08997 * 109.50005 * 174.58815 * 11 10 9 41 41 H 0.96996 * 120.00499 * 264.93203 * 14 12 11 42 42 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 43 43 H 1.09006 * 109.46741 * 60.00019 * 25 23 12 44 44 H 1.08998 * 109.47250 * 180.02562 * 25 23 12 45 45 H 1.09000 * 109.47190 * 300.00489 * 25 23 12 46 46 H 1.08997 * 109.58545 * 113.84385 * 26 9 7 47 47 H 1.08995 * 109.58591 * 353.41487 * 26 9 7 48 48 H 1.07999 * 120.34505 * 359.95726 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0048 5 7 4.2538 0.0273 -0.0009 6 6 5.7187 0.0442 -0.0009 7 6 6.2210 0.0500 -1.4217 8 8 5.4330 0.0414 -2.3436 9 7 7.5460 0.0648 -1.6680 10 6 8.5130 0.0748 -0.5619 11 6 9.4978 -1.0821 -0.7574 12 6 10.1312 -0.9783 -2.1468 13 1 10.8505 -1.7865 -2.2789 14 7 10.8156 0.3104 -2.2761 15 6 12.1000 0.4521 -1.8226 16 1 12.6081 -0.3862 -1.3692 17 6 12.7487 1.6730 -1.9456 18 7 12.1293 2.6948 -2.4977 19 14 14.5005 1.8665 -1.3262 20 1 14.9625 3.2558 -1.5739 21 1 14.5447 1.5819 0.1305 22 1 15.3870 0.9153 -2.0436 23 6 9.0410 -1.0862 -3.2154 24 1 8.5149 -2.0343 -3.1042 25 6 9.6788 -1.0161 -4.6044 26 6 8.0509 0.0712 -3.0478 27 6 3.6017 -1.1508 -0.0010 28 8 4.2312 -2.1966 -0.0010 29 6 2.1965 -1.1769 -0.0005 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5143 33 1 1.6822 2.1486 0.0004 34 1 4.1103 2.1344 0.0093 35 1 6.0923 -0.8416 0.5129 36 1 6.0718 0.9382 0.5130 37 1 9.0556 1.0201 -0.5593 38 1 7.9865 -0.0467 0.3848 39 1 8.9674 -2.0303 -0.6692 40 1 10.2773 -1.0288 0.0026 41 1 10.3592 1.0634 -2.6830 42 1 12.5826 3.5481 -2.5833 43 1 10.3850 -1.8381 -4.7218 44 1 8.9020 -1.0924 -5.3652 45 1 10.2038 -0.0673 -4.7156 46 1 8.5560 1.0162 -3.2477 47 1 7.2199 -0.0553 -3.7416 48 1 1.6682 -2.1188 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036205138.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:19 Heat of formation + Delta-G solvation = -22.540673 kcal Electronic energy + Delta-G solvation = -29430.395255 eV Core-core repulsion = 25486.108657 eV Total energy + Delta-G solvation = -3944.286598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.60916 -39.90064 -37.76501 -37.10586 -35.37517 -34.37599 -32.92048 -31.46027 -30.68418 -29.62152 -29.21439 -27.63868 -25.84157 -24.70713 -23.84832 -23.51747 -21.83224 -21.68387 -19.93355 -18.36230 -17.72370 -17.65836 -17.33031 -17.07363 -16.15687 -15.72191 -15.31425 -15.14693 -14.64480 -14.39041 -14.28760 -14.20568 -14.01094 -13.69502 -13.51439 -13.34375 -13.14852 -12.88551 -12.57780 -12.50110 -12.25947 -12.21558 -11.90017 -11.81036 -11.58406 -11.41424 -11.23053 -10.93165 -10.83312 -10.53067 -10.51760 -10.25849 -10.24049 -10.02497 -9.88307 -9.59203 -9.52839 -8.97072 -8.32481 -8.08627 -7.02416 -5.83450 -3.11963 0.68252 1.76445 2.35880 2.62588 3.16044 3.38787 3.44443 3.44776 3.58689 4.32928 4.42132 4.45171 4.53637 4.57521 4.78946 4.94450 5.03627 5.10607 5.18206 5.24516 5.27056 5.33885 5.34637 5.47086 5.53252 5.54767 5.67867 5.77062 5.78343 5.87449 5.91760 6.02164 6.03642 6.18796 6.19750 6.28393 6.35648 6.36755 6.48349 6.57032 6.65155 6.72542 6.88603 6.95468 6.96205 7.56220 7.64544 7.96753 8.20888 8.35231 9.46849 10.03093 10.38458 11.38868 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.002655 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.639985 B =10542.094807 C =10891.520409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.015 3.985 3 C -0.233 4.233 4 C 0.148 3.852 5 N -0.480 5.480 6 C 0.071 3.929 7 C 0.502 3.498 8 O -0.541 6.541 9 N -0.595 5.595 10 C 0.111 3.889 11 C -0.151 4.151 12 C 0.178 3.822 13 H 0.052 0.948 14 N -0.718 5.718 15 C -0.238 4.238 16 H 0.069 0.931 17 C -0.011 4.011 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.292 1.292 21 H -0.287 1.287 22 H -0.287 1.287 23 C -0.109 4.109 24 H 0.066 0.934 25 C -0.137 4.137 26 C 0.121 3.879 27 C 0.521 3.479 28 O -0.552 6.552 29 C -0.249 4.249 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.584 -2.156 6.445 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.011 3.989 3 C -0.256 4.256 4 C 0.021 3.979 5 N -0.190 5.190 6 C -0.054 4.054 7 C 0.287 3.713 8 O -0.419 6.419 9 N -0.328 5.328 10 C -0.011 4.011 11 C -0.192 4.192 12 C 0.068 3.932 13 H 0.070 0.930 14 N -0.361 5.361 15 C -0.369 4.369 16 H 0.087 0.913 17 C -0.207 4.207 18 N -0.582 5.582 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.214 1.214 22 H -0.214 1.214 23 C -0.129 4.129 24 H 0.084 0.916 25 C -0.195 4.195 26 C -0.001 4.001 27 C 0.324 3.676 28 O -0.434 6.434 29 C -0.271 4.271 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.178 0.822 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.363 -2.843 6.010 20.473 hybrid contribution 1.033 0.534 0.276 1.195 sum -18.330 -2.309 6.286 19.515 Atomic orbital electron populations 1.20915 0.90451 1.03521 1.02960 1.20189 0.96684 0.92695 0.89342 1.20493 0.92317 0.98870 1.13966 1.21921 0.93623 0.89593 0.92758 1.45086 1.07382 1.07256 1.59286 1.21884 0.79265 1.07199 0.97095 1.20499 0.82753 0.77192 0.90806 1.90707 1.54923 1.50585 1.45675 1.48095 1.04666 1.71438 1.08559 1.21804 0.90273 1.01856 0.87180 1.22527 0.98314 0.96258 1.02099 1.20214 0.91801 0.90714 0.90470 0.92993 1.42471 1.13453 1.07747 1.72412 1.19180 0.89908 0.95806 1.31994 0.91280 1.24700 0.98276 0.96108 1.01663 1.69638 1.37091 1.01793 1.49642 0.86308 0.84925 0.76690 0.78470 1.21813 1.21362 1.21359 1.21715 0.96413 0.97805 0.96954 0.91551 1.21664 0.99804 1.03418 0.94591 1.21680 0.97221 0.99547 0.81675 1.17081 0.89332 0.82472 0.78716 1.90957 1.69162 1.30274 1.53021 1.21898 0.92269 0.99491 1.13444 0.90192 0.90794 0.90880 0.83786 0.82152 0.85290 0.86108 0.89249 0.91452 0.93051 0.90533 0.78132 0.93474 0.92739 0.93780 0.91031 0.90440 0.89852 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.03 36.00 0.36 -0.36 16 2 C 0.01 0.13 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.95 9.71 -39.88 -0.39 -2.34 16 4 C 0.15 1.40 10.28 -16.84 -0.17 1.22 16 5 N -0.48 -6.05 2.07 -121.06 -0.25 -6.30 16 6 C 0.07 0.86 4.16 -5.20 -0.02 0.83 16 7 C 0.50 7.92 7.76 -10.99 -0.09 7.84 16 8 O -0.54 -10.39 15.84 5.56 0.09 -10.30 16 9 N -0.60 -9.36 2.97 -172.75 -0.51 -9.87 16 10 C 0.11 1.65 6.08 -3.72 -0.02 1.62 16 11 C -0.15 -2.43 5.78 -26.61 -0.15 -2.58 16 12 C 0.18 3.28 2.53 -67.89 -0.17 3.11 16 13 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 14 N -0.72 -16.06 3.64 -53.39 -0.19 -16.26 16 15 C -0.24 -6.06 9.93 -15.06 -0.15 -6.21 16 16 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -26.50 13.06 55.49 0.72 -25.77 16 19 Si 0.90 21.41 29.55 -169.99 -5.02 16.38 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 C -0.11 -1.81 2.67 -90.48 -0.24 -2.05 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 C -0.14 -2.23 9.05 37.16 0.34 -1.89 16 26 C 0.12 2.04 5.42 -3.69 -0.02 2.02 16 27 C 0.52 7.90 7.40 -15.44 -0.11 7.79 16 28 O -0.55 -10.39 16.64 4.86 0.08 -10.31 16 29 C -0.25 -3.03 9.65 -39.37 -0.38 -3.41 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 32 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.16 1.01 8.03 -52.48 -0.42 0.58 16 35 H 0.13 1.59 6.94 -51.93 -0.36 1.23 16 36 H 0.12 0.99 7.81 -51.93 -0.41 0.59 16 37 H 0.09 1.53 7.74 -51.93 -0.40 1.13 16 38 H 0.07 0.78 5.93 -51.93 -0.31 0.47 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.38 9.18 5.92 -40.82 -0.24 8.94 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.33 7.54 -51.93 -0.39 0.94 16 46 H 0.08 1.41 6.64 -51.93 -0.34 1.07 16 47 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 48 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -33.93 385.89 -8.64 -42.57 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -7.43 Total: 9.34 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.93 Total: 4.71 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.23 Total: -58.21 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: 0.17 Total: -20.61 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.93 -8.64 -42.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036205138.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.029 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds