Wall clock time and date at job start Tue Mar 31 2020 18:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40200 * 120.37078 * 2 1 4 4 C 1.35349 * 119.95034 * 179.76438 * 3 2 1 5 5 N 1.35766 * 120.70071 * 0.52050 * 4 3 2 6 6 C 1.46499 * 119.62049 * 179.75573 * 5 4 3 7 7 C 1.50696 * 109.47199 * 269.72297 * 6 5 4 8 8 O 1.21281 * 120.00157 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00064 * 180.02562 * 7 6 5 10 10 C 1.46924 * 120.63155 * 0.02562 * 9 7 6 11 11 C 1.53186 * 108.77784 * 126.36930 * 10 9 7 12 12 C 1.53046 * 109.31216 * 54.63720 * 11 10 9 13 13 H 1.08998 * 109.44528 * 178.62064 * 12 11 10 14 14 N 1.46496 * 109.45966 * 58.65191 * 12 11 10 15 15 C 1.36945 * 119.99718 * 84.93473 * 14 12 11 16 16 H 1.07997 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99878 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.53040 * 109.53260 * 298.63315 * 12 11 10 24 24 H 1.08994 * 109.50376 * 301.40924 * 23 12 11 25 25 C 1.53004 * 109.49449 * 181.34701 * 23 12 11 26 26 C 1.46932 * 120.63006 * 180.02562 * 9 7 6 27 27 C 1.34655 * 120.75134 * 359.47902 * 5 4 3 28 28 O 1.22060 * 119.98857 * 180.28054 * 27 5 4 29 29 C 1.36403 * 120.36743 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47479 * 269.97464 * 1 2 3 31 31 H 1.09000 * 109.46960 * 29.97426 * 1 2 3 32 32 H 1.09006 * 109.47119 * 149.97278 * 1 2 3 33 33 H 1.07998 * 120.02026 * 0.02562 * 3 2 1 34 34 H 1.08005 * 119.64788 * 180.27571 * 4 3 2 35 35 H 1.09000 * 109.46967 * 149.72411 * 6 5 4 36 36 H 1.09000 * 109.47426 * 29.72853 * 6 5 4 37 37 H 1.09000 * 109.58765 * 246.16184 * 10 9 7 38 38 H 1.09002 * 109.58532 * 6.43596 * 10 9 7 39 39 H 1.09002 * 109.49818 * 294.68368 * 11 10 9 40 40 H 1.08997 * 109.50005 * 174.58815 * 11 10 9 41 41 H 0.96996 * 120.00499 * 264.93203 * 14 12 11 42 42 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 43 43 H 1.09006 * 109.46741 * 60.00019 * 25 23 12 44 44 H 1.08998 * 109.47250 * 180.02562 * 25 23 12 45 45 H 1.09000 * 109.47190 * 300.00489 * 25 23 12 46 46 H 1.08997 * 109.58545 * 113.84385 * 26 9 7 47 47 H 1.08995 * 109.58591 * 353.41487 * 26 9 7 48 48 H 1.07999 * 120.34505 * 359.95726 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0048 5 7 4.2538 0.0273 -0.0009 6 6 5.7187 0.0442 -0.0009 7 6 6.2210 0.0500 -1.4217 8 8 5.4330 0.0414 -2.3436 9 7 7.5460 0.0648 -1.6680 10 6 8.5130 0.0748 -0.5619 11 6 9.4978 -1.0821 -0.7574 12 6 10.1312 -0.9783 -2.1468 13 1 10.8505 -1.7865 -2.2789 14 7 10.8156 0.3104 -2.2761 15 6 12.1000 0.4521 -1.8226 16 1 12.6081 -0.3862 -1.3692 17 6 12.7487 1.6730 -1.9456 18 7 12.1293 2.6948 -2.4977 19 14 14.5005 1.8665 -1.3262 20 1 14.9625 3.2558 -1.5739 21 1 14.5447 1.5819 0.1305 22 1 15.3870 0.9153 -2.0436 23 6 9.0410 -1.0862 -3.2154 24 1 8.5149 -2.0343 -3.1042 25 6 9.6788 -1.0161 -4.6044 26 6 8.0509 0.0712 -3.0478 27 6 3.6017 -1.1508 -0.0010 28 8 4.2312 -2.1966 -0.0010 29 6 2.1965 -1.1769 -0.0005 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5143 33 1 1.6822 2.1486 0.0004 34 1 4.1103 2.1344 0.0093 35 1 6.0923 -0.8416 0.5129 36 1 6.0718 0.9382 0.5130 37 1 9.0556 1.0201 -0.5593 38 1 7.9865 -0.0467 0.3848 39 1 8.9674 -2.0303 -0.6692 40 1 10.2773 -1.0288 0.0026 41 1 10.3592 1.0634 -2.6830 42 1 12.5826 3.5481 -2.5833 43 1 10.3850 -1.8381 -4.7218 44 1 8.9020 -1.0924 -5.3652 45 1 10.2038 -0.0673 -4.7156 46 1 8.5560 1.0162 -3.2477 47 1 7.2199 -0.0553 -3.7416 48 1 1.6682 -2.1188 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036205138.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:17 Heat of formation + Delta-G solvation = -43.278353 kcal Electronic energy + Delta-G solvation = -29431.294509 eV Core-core repulsion = 25486.108657 eV Total energy + Delta-G solvation = -3945.185851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.56963 -41.16850 -39.15393 -38.09598 -36.25143 -35.93120 -34.53655 -33.02077 -31.48623 -30.93356 -30.49873 -28.57839 -27.17381 -26.11066 -25.25737 -24.65442 -23.10852 -22.67076 -21.15989 -19.78231 -19.27543 -18.68575 -18.53087 -18.24129 -17.04423 -16.88804 -16.72607 -16.34186 -16.23604 -15.81131 -15.57916 -15.17983 -15.07273 -14.91715 -14.77494 -14.48559 -14.23978 -14.13297 -13.68690 -13.57529 -13.34573 -13.11869 -12.99661 -12.91981 -12.86635 -12.82554 -12.68681 -12.45599 -12.42549 -12.15662 -12.00647 -11.93748 -11.59652 -11.25267 -11.18209 -11.08715 -10.85555 -10.54372 -9.68287 -8.98624 -8.92061 -7.87621 -5.13808 -0.11731 0.91974 1.39273 1.43826 1.51314 1.52425 1.57912 2.00912 2.60750 2.66091 3.32473 3.46034 3.61096 3.71884 3.81639 3.83980 3.87117 3.98121 4.05934 4.08297 4.13250 4.27853 4.34168 4.36090 4.39193 4.48374 4.63131 4.66763 4.78316 4.80963 4.85000 4.89552 4.93625 4.99303 5.10065 5.11049 5.17389 5.24793 5.27128 5.28090 5.44890 5.49109 5.57781 5.61286 5.66637 6.06263 6.31398 6.34128 6.92804 6.99775 7.42174 8.16663 8.41897 9.35218 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.002655 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.639985 B =10542.094807 C =10891.520409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.033 3.967 3 C -0.228 4.228 4 C 0.136 3.864 5 N -0.483 5.483 6 C 0.073 3.927 7 C 0.500 3.500 8 O -0.579 6.579 9 N -0.595 5.595 10 C 0.116 3.884 11 C -0.145 4.145 12 C 0.173 3.827 13 H 0.045 0.955 14 N -0.722 5.722 15 C -0.228 4.228 16 H 0.074 0.926 17 C -0.070 4.070 18 N -0.967 5.967 19 Si 0.962 3.038 20 H -0.302 1.302 21 H -0.279 1.279 22 H -0.285 1.285 23 C -0.100 4.100 24 H 0.075 0.925 25 C -0.131 4.131 26 C 0.127 3.873 27 C 0.502 3.498 28 O -0.611 6.611 29 C -0.289 4.289 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.183 0.817 34 H 0.197 0.803 35 H 0.128 0.872 36 H 0.167 0.833 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.375 0.625 42 H 0.248 0.752 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.044 0.956 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.175 -1.373 7.927 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.029 3.971 3 C -0.250 4.250 4 C 0.010 3.990 5 N -0.192 5.192 6 C -0.051 4.051 7 C 0.288 3.712 8 O -0.460 6.460 9 N -0.327 5.327 10 C -0.006 4.006 11 C -0.186 4.186 12 C 0.064 3.936 13 H 0.063 0.937 14 N -0.363 5.363 15 C -0.360 4.360 16 H 0.091 0.909 17 C -0.262 4.262 18 N -0.618 5.618 19 Si 0.793 3.207 20 H -0.228 1.228 21 H -0.205 1.205 22 H -0.212 1.212 23 C -0.120 4.120 24 H 0.094 0.906 25 C -0.189 4.189 26 C 0.004 3.996 27 C 0.308 3.692 28 O -0.499 6.499 29 C -0.311 4.311 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.200 0.800 34 H 0.214 0.786 35 H 0.146 0.854 36 H 0.184 0.816 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.208 0.792 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.975 -2.070 7.523 22.379 hybrid contribution 1.402 0.303 -0.218 1.451 sum -19.573 -1.767 7.305 20.966 Atomic orbital electron populations 1.21034 0.87792 1.04585 1.04403 1.20648 0.98598 0.91979 0.85875 1.21054 0.92187 0.99953 1.11779 1.22668 0.94559 0.89624 0.92168 1.45106 1.07622 1.07650 1.58784 1.22010 0.79351 1.09258 0.94516 1.21148 0.82138 0.75853 0.92093 1.90685 1.55725 1.52233 1.47309 1.48127 1.05104 1.71259 1.08161 1.21797 0.90119 1.00084 0.88557 1.22405 0.98545 0.97666 0.99967 1.20395 0.92072 0.88562 0.92524 0.93688 1.42533 1.12788 1.08859 1.72133 1.19507 0.90884 0.95507 1.30059 0.90852 1.25345 1.01527 0.96249 1.03108 1.69784 1.38257 1.01944 1.51839 0.85375 0.81225 0.75836 0.78262 1.22834 1.20494 1.21195 1.21630 0.95782 0.98065 0.96544 0.90622 1.21595 1.00179 1.02019 0.95074 1.21481 0.96749 0.98671 0.82711 1.17559 0.90393 0.82558 0.78738 1.90898 1.70255 1.32165 1.56543 1.21900 0.91339 1.00881 1.16961 0.88303 0.88765 0.90815 0.79974 0.78642 0.85421 0.81597 0.91455 0.87445 0.91435 0.90875 0.79159 0.94324 0.92285 0.91975 0.93696 0.92247 0.90483 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.03 71.23 0.71 -0.34 16 2 C 0.03 0.54 5.89 -19.82 -0.12 0.42 16 3 C -0.23 -2.98 9.71 22.08 0.21 -2.76 16 4 C 0.14 2.14 10.28 83.42 0.86 3.00 16 5 N -0.48 -11.49 2.07 -655.06 -1.36 -12.85 16 6 C 0.07 1.63 4.16 85.63 0.36 1.99 16 7 C 0.50 15.29 7.76 87.66 0.68 15.98 16 8 O -0.58 -22.14 15.84 -3.03 -0.05 -22.19 16 9 N -0.59 -18.21 2.97 -818.85 -2.43 -20.64 16 10 C 0.12 3.26 6.08 86.36 0.53 3.79 16 11 C -0.15 -4.48 5.78 30.67 0.18 -4.30 16 12 C 0.17 6.30 2.53 45.02 0.11 6.41 16 13 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 14 N -0.72 -32.50 3.64 -322.82 -1.18 -33.68 16 15 C -0.23 -11.58 9.93 84.03 0.83 -10.75 16 16 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 17 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 18 N -0.97 -55.91 13.06 21.65 0.28 -55.62 16 19 Si 0.96 44.21 29.55 68.60 2.03 46.24 16 20 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 23 C -0.10 -3.31 2.67 -10.70 -0.03 -3.34 16 24 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 25 C -0.13 -4.25 9.05 71.98 0.65 -3.60 16 26 C 0.13 4.30 5.42 86.37 0.47 4.77 16 27 C 0.50 15.40 7.40 84.82 0.63 16.03 16 28 O -0.61 -24.01 16.64 -5.51 -0.09 -24.10 16 29 C -0.29 -7.03 9.65 22.40 0.22 -6.82 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.48 8.10 -2.39 -0.02 0.46 16 32 H 0.07 0.67 8.09 -2.38 -0.02 0.65 16 33 H 0.18 0.99 8.06 -2.91 -0.02 0.96 16 34 H 0.20 1.58 8.03 -2.91 -0.02 1.56 16 35 H 0.13 2.95 6.94 -2.39 -0.02 2.93 16 36 H 0.17 2.09 7.81 -2.39 -0.02 2.07 16 37 H 0.07 2.24 7.74 -2.39 -0.02 2.22 16 38 H 0.11 2.16 5.93 -2.39 -0.01 2.14 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.37 18.34 5.92 -92.71 -0.55 17.79 16 42 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 43 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.04 1.70 7.54 -2.39 -0.02 1.68 16 46 H 0.06 2.23 6.64 -2.39 -0.02 2.22 16 47 H 0.08 2.71 7.00 -2.39 -0.02 2.70 16 48 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -77.30 385.89 4.38 -72.92 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.41 Total: 32.75 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 6.76 Total: 17.17 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -4.68 Total: -122.79 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -0.14 Total: -46.29 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -77.30 4.38 -72.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036205138.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.646 kcal (2) G-P(sol) polarization free energy of solvation -77.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds