Wall clock time and date at job start Tue Mar 31 2020 17:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37995 * 120.81923 * 2 1 4 4 C 1.39122 * 119.26591 * 180.24987 * 3 2 1 5 5 O 1.35497 * 119.52874 * 180.02562 * 4 3 2 6 6 N 1.32441 * 120.94612 * 0.02685 * 4 3 2 7 7 C 1.31631 * 121.80092 * 359.97438 * 6 4 3 8 8 C 1.50701 * 119.68369 * 180.02562 * 7 6 4 9 9 C 1.39557 * 120.62931 * 359.97438 * 7 6 4 10 10 C 1.47617 * 120.50212 * 180.02562 * 9 7 6 11 11 O 1.21583 * 120.00120 * 269.98049 * 10 9 7 12 12 N 1.34777 * 119.99683 * 89.97912 * 10 9 7 13 13 C 1.46920 * 120.63484 * 359.97438 * 12 10 9 14 14 C 1.53191 * 108.77646 * 126.36725 * 13 12 10 15 15 C 1.53046 * 109.31140 * 54.63695 * 14 13 12 16 16 H 1.08994 * 109.45891 * 178.62435 * 15 14 13 17 17 N 1.46510 * 109.45635 * 58.65623 * 15 14 13 18 18 C 1.36935 * 120.00083 * 85.00375 * 17 15 14 19 19 H 1.08001 * 119.99827 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00037 * 179.97438 * 18 17 15 21 21 N 1.31616 * 119.99878 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99896 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46933 * 90.00436 * 22 20 18 24 24 H 1.48491 * 109.47120 * 210.00184 * 22 20 18 25 25 H 1.48505 * 109.47038 * 330.00546 * 22 20 18 26 26 C 1.53036 * 109.54062 * 298.63666 * 15 14 13 27 27 H 1.09003 * 109.49335 * 301.41508 * 26 15 14 28 28 C 1.53001 * 109.50103 * 181.31506 * 26 15 14 29 29 C 1.46932 * 120.62751 * 179.72025 * 12 10 9 30 30 H 1.09010 * 109.47256 * 269.71534 * 1 2 3 31 31 H 1.08997 * 109.47435 * 29.71578 * 1 2 3 32 32 H 1.09009 * 109.46909 * 149.72192 * 1 2 3 33 33 H 1.07996 * 120.36581 * 0.25777 * 3 2 1 34 34 H 0.96701 * 114.00133 * 270.00659 * 5 4 3 35 35 H 1.09006 * 109.46834 * 269.96983 * 8 7 6 36 36 H 1.08998 * 109.47346 * 29.97465 * 8 7 6 37 37 H 1.09000 * 109.46952 * 149.97703 * 8 7 6 38 38 H 1.08998 * 109.58995 * 246.15960 * 13 12 10 39 39 H 1.09003 * 109.58619 * 6.58156 * 13 12 10 40 40 H 1.09001 * 109.50000 * 174.58325 * 14 13 12 41 41 H 1.08998 * 109.50265 * 294.65414 * 14 13 12 42 42 H 0.96999 * 119.99320 * 264.99941 * 17 15 14 43 43 H 0.97006 * 119.99401 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.46887 * 59.99574 * 28 26 15 45 45 H 1.08994 * 109.47110 * 179.97438 * 28 26 15 46 46 H 1.08995 * 109.46738 * 299.99806 * 28 26 15 47 47 H 1.09000 * 109.58714 * 353.42209 * 29 12 10 48 48 H 1.09005 * 109.58284 * 113.83940 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1474 -0.0053 5 8 4.3042 2.3078 -0.0048 6 7 4.2547 -0.0065 -0.0108 7 6 3.6204 -1.1600 -0.0111 8 6 4.4081 -2.4448 -0.0169 9 6 2.2256 -1.2044 -0.0049 10 6 1.5172 -2.4994 -0.0046 11 8 1.2204 -3.0303 -1.0574 12 7 1.1994 -3.0934 1.1627 13 6 1.5519 -2.4647 2.4429 14 6 0.2880 -2.3513 3.3011 15 6 -0.3579 -3.7322 3.4358 16 1 -1.2440 -3.6587 4.0662 17 7 0.5981 -4.6608 4.0441 18 6 0.7154 -4.7276 5.4068 19 1 0.1035 -4.0954 6.0331 20 6 1.6209 -5.6078 5.9832 21 7 1.7340 -5.6716 7.2930 22 14 2.6788 -6.7018 4.8999 23 1 3.9468 -6.0000 4.5760 24 1 2.9821 -7.9654 5.6186 25 1 1.9486 -7.0096 3.6440 26 6 -0.7585 -4.2472 2.0515 27 1 -1.4507 -3.5441 1.5881 28 6 -1.4337 -5.6131 2.1904 29 6 0.4890 -4.3795 1.1792 30 1 -0.3634 -0.0051 1.0277 31 1 -0.3634 0.8925 -0.5094 32 1 -0.3633 -0.8876 -0.5182 33 1 1.6935 2.1313 0.0042 34 1 4.5039 2.6471 -0.8880 35 1 4.5937 -2.7524 -1.0461 36 1 5.3588 -2.2905 0.4933 37 1 3.8413 -3.2207 0.4976 38 1 2.2907 -3.0771 2.9597 39 1 1.9608 -1.4707 2.2615 40 1 0.5518 -1.9751 4.2895 41 1 -0.4139 -1.6657 2.8263 42 1 1.1479 -5.2284 3.4816 43 1 2.3665 -6.2870 7.6957 44 1 -2.3228 -5.5172 2.8135 45 1 -1.7192 -5.9792 1.2043 46 1 -0.7402 -6.3157 2.6524 47 1 0.1968 -4.6486 0.1641 48 1 1.1397 -5.1510 1.5910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036313800.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:02 Heat of formation + Delta-G solvation = -29.092458 kcal Electronic energy + Delta-G solvation = -30449.708437 eV Core-core repulsion = 26505.137733 eV Total energy + Delta-G solvation = -3944.570705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.28375 -39.85233 -38.07311 -37.24525 -34.59099 -34.43143 -33.03988 -31.86912 -31.57969 -29.81825 -28.34827 -28.17563 -26.42518 -25.31776 -23.56285 -23.13997 -21.76351 -21.56694 -20.26120 -18.76124 -18.40866 -17.94502 -17.51023 -17.19095 -16.28577 -15.89405 -15.04959 -14.85486 -14.50346 -14.44527 -14.31942 -13.88106 -13.75506 -13.68832 -13.51622 -13.34665 -13.18357 -12.83805 -12.62260 -12.53423 -12.39896 -12.33118 -12.12704 -11.86961 -11.81802 -11.65526 -11.47696 -11.05954 -11.00739 -10.69432 -10.58017 -10.26439 -10.16431 -9.93577 -9.78649 -9.61227 -9.59035 -9.03548 -8.93921 -8.48945 -7.33662 -5.82965 -3.18705 0.53909 0.88559 2.47847 2.96710 3.10069 3.30468 3.32905 3.40732 3.44730 4.19344 4.23955 4.38958 4.52448 4.76107 4.89866 4.99237 5.04469 5.07965 5.16598 5.22888 5.26689 5.29920 5.31985 5.43975 5.45570 5.54935 5.55622 5.62421 5.67067 5.73001 5.80910 5.84494 5.88998 5.91363 6.00131 6.14387 6.17712 6.22426 6.30934 6.40139 6.48491 6.59877 6.69044 6.80362 7.16005 7.41608 7.62882 7.92860 8.08863 8.35972 9.13858 9.86385 10.05776 11.35396 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.004013 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.555649 B = 6976.178864 C = 7579.211306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.011 3.989 3 C -0.196 4.196 4 C 0.329 3.671 5 O -0.480 6.480 6 N -0.505 5.505 7 C 0.194 3.806 8 C -0.113 4.113 9 C -0.181 4.181 10 C 0.572 3.428 11 O -0.540 6.540 12 N -0.593 5.593 13 C 0.113 3.887 14 C -0.148 4.148 15 C 0.185 3.815 16 H 0.061 0.939 17 N -0.743 5.743 18 C -0.242 4.242 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.932 5.932 22 Si 0.877 3.123 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.111 4.111 27 H 0.071 0.929 28 C -0.138 4.138 29 C 0.116 3.884 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.146 0.854 34 H 0.402 0.598 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.058 0.942 45 H 0.046 0.954 46 H 0.065 0.935 47 H 0.089 0.911 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.463 12.334 -17.267 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.003 3.997 3 C -0.217 4.217 4 C 0.150 3.850 5 O -0.287 6.287 6 N -0.225 5.225 7 C 0.055 3.945 8 C -0.170 4.170 9 C -0.187 4.187 10 C 0.358 3.642 11 O -0.418 6.418 12 N -0.325 5.325 13 C -0.009 4.009 14 C -0.189 4.189 15 C 0.075 3.925 16 H 0.079 0.921 17 N -0.387 5.387 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.188 4.188 21 N -0.580 5.580 22 Si 0.707 3.293 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.131 4.131 27 H 0.090 0.910 28 C -0.196 4.196 29 C -0.006 4.006 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.164 0.836 34 H 0.260 0.740 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.194 0.806 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.107 0.893 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.773 12.081 -16.942 20.822 hybrid contribution 0.193 -0.523 -0.939 1.093 sum -0.580 11.558 -17.881 21.299 Atomic orbital electron populations 1.20953 0.89293 1.04007 1.03795 1.20179 0.97002 0.90775 0.91727 1.21851 0.93710 0.99304 1.06830 1.19230 0.87016 0.85032 0.93674 1.84735 1.76040 1.34017 1.33957 1.66981 1.41839 0.97805 1.15899 1.21014 0.89146 0.93159 0.91144 1.20872 1.00640 0.91607 1.03876 1.20637 0.94869 0.94476 1.08668 1.17885 0.78626 0.83869 0.83825 1.90786 1.54948 1.65151 1.30955 1.48170 1.56194 1.22207 1.05915 1.21744 0.98812 0.97543 0.82788 1.22508 0.96395 1.00111 0.99904 1.20181 0.92801 0.88281 0.91216 0.92097 1.42833 1.45746 1.45718 1.04386 1.19044 1.18340 1.18774 0.81062 0.89162 1.24630 0.99478 0.99436 0.95211 1.69689 1.39461 1.40547 1.08280 0.86686 0.81228 0.81194 0.80182 1.21082 1.21697 1.20371 1.21684 0.96069 0.98475 0.96892 0.91014 1.21675 1.00954 0.96317 1.00660 1.21637 0.93549 0.84063 1.01322 0.89458 0.90292 0.90425 0.83633 0.74038 0.89486 0.89466 0.90252 0.89969 0.91244 0.90106 0.92953 0.80605 0.93035 0.92254 0.93495 0.91583 0.89254 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.68 36.01 0.35 -0.80 16 2 C 0.01 0.13 5.81 -103.96 -0.60 -0.48 16 3 C -0.20 -1.99 9.72 -39.34 -0.38 -2.38 16 4 C 0.33 3.84 7.74 -16.96 -0.13 3.71 16 5 O -0.48 -4.61 13.55 -18.18 -0.25 -4.85 16 6 N -0.51 -6.87 10.28 -9.20 -0.09 -6.97 16 7 C 0.19 2.63 6.82 -82.19 -0.56 2.07 16 8 C -0.11 -1.38 9.78 36.01 0.35 -1.03 16 9 C -0.18 -2.44 3.64 -104.82 -0.38 -2.82 16 10 C 0.57 8.49 4.21 -12.43 -0.05 8.44 16 11 O -0.54 -9.40 16.52 5.29 0.09 -9.31 16 12 N -0.59 -8.65 2.98 -174.20 -0.52 -9.17 16 13 C 0.11 1.69 6.08 -3.71 -0.02 1.67 16 14 C -0.15 -2.25 5.78 -26.61 -0.15 -2.40 16 15 C 0.19 3.13 2.53 -67.88 -0.17 2.96 16 16 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 17 N -0.74 -15.62 3.45 -53.38 -0.18 -15.80 16 18 C -0.24 -6.29 10.41 -15.06 -0.16 -6.45 16 19 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 20 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -28.22 13.97 55.49 0.78 -27.44 16 22 Si 0.88 21.17 27.73 -169.99 -4.71 16.46 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 26 C -0.11 -1.60 2.66 -90.70 -0.24 -1.84 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 C -0.14 -1.96 9.05 37.16 0.34 -1.62 16 29 C 0.12 1.73 5.40 -3.91 -0.02 1.71 16 30 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.08 0.84 7.19 -51.92 -0.37 0.46 16 33 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.40 1.70 9.06 45.56 0.41 2.11 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.03 7.07 -51.93 -0.37 0.66 16 38 H 0.08 1.41 7.74 -51.93 -0.40 1.00 16 39 H 0.07 0.97 6.23 -51.93 -0.32 0.65 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.36 7.60 3.80 -40.82 -0.15 7.45 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 1.08 7.54 -51.93 -0.39 0.69 16 47 H 0.09 1.31 7.00 -51.93 -0.36 0.95 16 48 H 0.07 1.12 6.64 -51.93 -0.34 0.77 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -32.78 382.04 -7.62 -40.40 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.54 Total: 10.06 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -1.94 Total: 0.88 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.02 Total: -59.38 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.16 Total: -14.17 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.46 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.78 -7.62 -40.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036313800.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.303 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds