Wall clock time and date at job start Tue Mar 31 2020 17:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37995 * 120.81923 * 2 1 4 4 C 1.39122 * 119.26591 * 180.24987 * 3 2 1 5 5 O 1.35497 * 119.52874 * 180.02562 * 4 3 2 6 6 N 1.32441 * 120.94612 * 0.02685 * 4 3 2 7 7 C 1.31631 * 121.80092 * 359.97438 * 6 4 3 8 8 C 1.50701 * 119.68369 * 180.02562 * 7 6 4 9 9 C 1.39557 * 120.62931 * 359.97438 * 7 6 4 10 10 C 1.47617 * 120.50212 * 180.02562 * 9 7 6 11 11 O 1.21583 * 120.00120 * 269.98049 * 10 9 7 12 12 N 1.34777 * 119.99683 * 89.97912 * 10 9 7 13 13 C 1.46920 * 120.63484 * 359.97438 * 12 10 9 14 14 C 1.53191 * 108.77646 * 126.36725 * 13 12 10 15 15 C 1.53046 * 109.31140 * 54.63695 * 14 13 12 16 16 H 1.08994 * 109.45891 * 178.62435 * 15 14 13 17 17 N 1.46510 * 109.45635 * 58.65623 * 15 14 13 18 18 C 1.36935 * 120.00083 * 85.00375 * 17 15 14 19 19 H 1.08001 * 119.99827 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00037 * 179.97438 * 18 17 15 21 21 N 1.31616 * 119.99878 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99896 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46933 * 90.00436 * 22 20 18 24 24 H 1.48491 * 109.47120 * 210.00184 * 22 20 18 25 25 H 1.48505 * 109.47038 * 330.00546 * 22 20 18 26 26 C 1.53036 * 109.54062 * 298.63666 * 15 14 13 27 27 H 1.09003 * 109.49335 * 301.41508 * 26 15 14 28 28 C 1.53001 * 109.50103 * 181.31506 * 26 15 14 29 29 C 1.46932 * 120.62751 * 179.72025 * 12 10 9 30 30 H 1.09010 * 109.47256 * 269.71534 * 1 2 3 31 31 H 1.08997 * 109.47435 * 29.71578 * 1 2 3 32 32 H 1.09009 * 109.46909 * 149.72192 * 1 2 3 33 33 H 1.07996 * 120.36581 * 0.25777 * 3 2 1 34 34 H 0.96701 * 114.00133 * 270.00659 * 5 4 3 35 35 H 1.09006 * 109.46834 * 269.96983 * 8 7 6 36 36 H 1.08998 * 109.47346 * 29.97465 * 8 7 6 37 37 H 1.09000 * 109.46952 * 149.97703 * 8 7 6 38 38 H 1.08998 * 109.58995 * 246.15960 * 13 12 10 39 39 H 1.09003 * 109.58619 * 6.58156 * 13 12 10 40 40 H 1.09001 * 109.50000 * 174.58325 * 14 13 12 41 41 H 1.08998 * 109.50265 * 294.65414 * 14 13 12 42 42 H 0.96999 * 119.99320 * 264.99941 * 17 15 14 43 43 H 0.97006 * 119.99401 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.46887 * 59.99574 * 28 26 15 45 45 H 1.08994 * 109.47110 * 179.97438 * 28 26 15 46 46 H 1.08995 * 109.46738 * 299.99806 * 28 26 15 47 47 H 1.09000 * 109.58714 * 353.42209 * 29 12 10 48 48 H 1.09005 * 109.58284 * 113.83940 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1474 -0.0053 5 8 4.3042 2.3078 -0.0048 6 7 4.2547 -0.0065 -0.0108 7 6 3.6204 -1.1600 -0.0111 8 6 4.4081 -2.4448 -0.0169 9 6 2.2256 -1.2044 -0.0049 10 6 1.5172 -2.4994 -0.0046 11 8 1.2204 -3.0303 -1.0574 12 7 1.1994 -3.0934 1.1627 13 6 1.5519 -2.4647 2.4429 14 6 0.2880 -2.3513 3.3011 15 6 -0.3579 -3.7322 3.4358 16 1 -1.2440 -3.6587 4.0662 17 7 0.5981 -4.6608 4.0441 18 6 0.7154 -4.7276 5.4068 19 1 0.1035 -4.0954 6.0331 20 6 1.6209 -5.6078 5.9832 21 7 1.7340 -5.6716 7.2930 22 14 2.6788 -6.7018 4.8999 23 1 3.9468 -6.0000 4.5760 24 1 2.9821 -7.9654 5.6186 25 1 1.9486 -7.0096 3.6440 26 6 -0.7585 -4.2472 2.0515 27 1 -1.4507 -3.5441 1.5881 28 6 -1.4337 -5.6131 2.1904 29 6 0.4890 -4.3795 1.1792 30 1 -0.3634 -0.0051 1.0277 31 1 -0.3634 0.8925 -0.5094 32 1 -0.3633 -0.8876 -0.5182 33 1 1.6935 2.1313 0.0042 34 1 4.5039 2.6471 -0.8880 35 1 4.5937 -2.7524 -1.0461 36 1 5.3588 -2.2905 0.4933 37 1 3.8413 -3.2207 0.4976 38 1 2.2907 -3.0771 2.9597 39 1 1.9608 -1.4707 2.2615 40 1 0.5518 -1.9751 4.2895 41 1 -0.4139 -1.6657 2.8263 42 1 1.1479 -5.2284 3.4816 43 1 2.3665 -6.2870 7.6957 44 1 -2.3228 -5.5172 2.8135 45 1 -1.7192 -5.9792 1.2043 46 1 -0.7402 -6.3157 2.6524 47 1 0.1968 -4.6486 0.1641 48 1 1.1397 -5.1510 1.5910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036313800.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:01 Heat of formation + Delta-G solvation = -53.390618 kcal Electronic energy + Delta-G solvation = -30450.762084 eV Core-core repulsion = 26505.137733 eV Total energy + Delta-G solvation = -3945.624352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.27370 -40.94562 -39.28282 -38.13907 -35.98438 -35.39912 -34.55259 -33.22110 -32.78235 -31.48685 -29.18340 -29.07676 -27.60060 -26.64769 -25.08277 -24.37399 -23.06257 -22.42534 -21.39012 -19.97204 -19.77531 -19.39408 -18.55586 -18.23857 -17.44747 -16.72403 -16.67099 -16.25769 -15.78725 -15.67308 -15.28690 -15.21156 -15.11098 -14.77814 -14.48241 -14.44224 -14.22145 -14.16898 -13.87047 -13.66339 -13.44515 -13.32079 -13.13818 -13.08997 -12.96833 -12.93909 -12.71091 -12.64215 -12.48139 -12.06054 -11.99594 -11.94177 -11.68302 -11.29814 -11.19936 -10.93093 -10.65147 -10.53278 -9.87680 -9.74912 -9.24092 -7.98067 -5.28805 -0.34754 0.02697 1.33838 1.36498 1.37853 1.45249 1.83818 2.28302 2.49467 2.57997 3.25758 3.34521 3.34826 3.47819 3.61387 3.78309 3.93452 3.94945 3.99916 4.15280 4.20784 4.26373 4.31567 4.34486 4.44553 4.50413 4.51768 4.53691 4.65060 4.69001 4.77605 4.79952 4.91273 4.93007 4.99499 5.03612 5.09922 5.11509 5.16059 5.24359 5.26233 5.39317 5.43280 5.57702 5.84826 6.23409 6.26883 6.53963 6.78009 6.93339 7.13224 7.90072 8.07638 9.23870 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.004013 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.555649 B = 6976.178864 C = 7579.211306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.011 3.989 3 C -0.186 4.186 4 C 0.326 3.674 5 O -0.486 6.486 6 N -0.530 5.530 7 C 0.181 3.819 8 C -0.111 4.111 9 C -0.202 4.202 10 C 0.581 3.419 11 O -0.567 6.567 12 N -0.590 5.590 13 C 0.123 3.877 14 C -0.140 4.140 15 C 0.178 3.822 16 H 0.053 0.947 17 N -0.742 5.742 18 C -0.212 4.212 19 H 0.062 0.938 20 C -0.058 4.058 21 N -0.985 5.985 22 Si 0.935 3.065 23 H -0.283 1.283 24 H -0.301 1.301 25 H -0.253 1.253 26 C -0.099 4.099 27 H 0.096 0.904 28 C -0.136 4.136 29 C 0.117 3.883 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.179 0.821 34 H 0.424 0.576 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.362 0.638 43 H 0.254 0.746 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.040 0.960 47 H 0.095 0.905 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 14.134 -19.726 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.003 3.997 3 C -0.207 4.207 4 C 0.148 3.852 5 O -0.297 6.297 6 N -0.251 5.251 7 C 0.043 3.957 8 C -0.169 4.169 9 C -0.208 4.208 10 C 0.369 3.631 11 O -0.447 6.447 12 N -0.321 5.321 13 C 0.001 3.999 14 C -0.181 4.181 15 C 0.070 3.930 16 H 0.071 0.929 17 N -0.386 5.386 18 C -0.343 4.343 19 H 0.080 0.920 20 C -0.250 4.250 21 N -0.636 5.636 22 Si 0.764 3.236 23 H -0.210 1.210 24 H -0.229 1.229 25 H -0.177 1.177 26 C -0.119 4.119 27 H 0.114 0.886 28 C -0.194 4.194 29 C -0.005 4.005 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.196 0.804 34 H 0.286 0.714 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.196 0.804 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.060 0.940 47 H 0.113 0.887 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.727 13.921 -19.474 24.001 hybrid contribution 0.433 -0.910 -0.219 1.031 sum -1.295 13.012 -19.694 23.639 Atomic orbital electron populations 1.21013 0.87668 1.04656 1.04479 1.20486 0.98158 0.90309 0.90757 1.22128 0.93072 1.00211 1.05248 1.19515 0.87872 0.85004 0.92835 1.84689 1.75895 1.33061 1.36066 1.66975 1.42619 0.98426 1.17078 1.21096 0.89424 0.93478 0.91704 1.20859 1.00573 0.91208 1.04226 1.20597 0.94909 0.94471 1.10777 1.18024 0.77851 0.84079 0.83166 1.90766 1.56090 1.66050 1.31783 1.48122 1.56113 1.22057 1.05784 1.21571 0.98020 0.97692 0.82656 1.22378 0.97013 0.99259 0.99403 1.20425 0.91643 0.88495 0.92455 0.92867 1.42807 1.46622 1.46655 1.02526 1.19002 1.15974 1.16349 0.82971 0.91982 1.25281 1.01696 1.01778 0.96209 1.69856 1.41143 1.42250 1.10364 0.85705 0.79723 0.78809 0.79339 1.20988 1.22862 1.17726 1.21603 0.96291 0.99148 0.94880 0.88576 1.21652 1.00310 0.95528 1.01885 1.21611 0.93421 0.83920 1.01556 0.88549 0.87509 0.91964 0.80378 0.71379 0.88789 0.89109 0.91358 0.92472 0.90006 0.91903 0.89755 0.80392 0.93680 0.92020 0.91126 0.94033 0.88671 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.68 71.24 0.69 -1.13 16 2 C 0.01 0.21 5.81 -19.43 -0.11 0.10 16 3 C -0.19 -3.15 9.72 22.42 0.22 -2.93 16 4 C 0.33 6.82 7.74 84.81 0.66 7.48 16 5 O -0.49 -8.03 13.55 -87.98 -1.19 -9.22 16 6 N -0.53 -13.70 10.28 -295.90 -3.04 -16.75 16 7 C 0.18 4.73 6.82 42.91 0.29 5.03 16 8 C -0.11 -2.69 9.78 71.24 0.70 -2.00 16 9 C -0.20 -5.10 3.64 -20.00 -0.07 -5.17 16 10 C 0.58 16.39 4.21 86.72 0.37 16.76 16 11 O -0.57 -18.98 16.52 -3.98 -0.07 -19.05 16 12 N -0.59 -16.25 2.98 -823.31 -2.45 -18.70 16 13 C 0.12 3.51 6.08 86.36 0.53 4.04 16 14 C -0.14 -4.00 5.78 30.67 0.18 -3.82 16 15 C 0.18 5.78 2.53 45.02 0.11 5.89 16 16 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 17 N -0.74 -30.89 3.45 -322.80 -1.11 -32.01 16 18 C -0.21 -11.16 10.41 84.03 0.87 -10.29 16 19 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 20 C -0.06 -3.30 5.50 84.86 0.47 -2.84 16 21 N -0.98 -61.61 13.97 21.65 0.30 -61.31 16 22 Si 0.94 44.36 27.73 68.60 1.90 46.27 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 25 H -0.25 -10.76 6.52 99.48 0.65 -10.11 16 26 C -0.10 -2.62 2.66 -10.85 -0.03 -2.65 16 27 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 28 C -0.14 -3.55 9.05 71.98 0.65 -2.90 16 29 C 0.12 3.26 5.40 86.23 0.47 3.73 16 30 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.11 0.99 8.10 -2.39 -0.02 0.97 16 32 H 0.06 1.16 7.19 -2.38 -0.02 1.14 16 33 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.42 2.40 9.06 -74.06 -0.67 1.73 16 35 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 1.76 7.07 -2.39 -0.02 1.75 16 38 H 0.06 1.94 7.74 -2.39 -0.02 1.92 16 39 H 0.08 2.16 6.23 -2.39 -0.01 2.14 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.36 14.98 3.80 -92.71 -0.35 14.63 16 43 H 0.25 15.37 8.31 -92.70 -0.77 14.60 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 46 H 0.04 1.29 7.54 -2.39 -0.02 1.27 16 47 H 0.10 2.59 7.00 -2.39 -0.02 2.58 16 48 H 0.06 1.72 6.64 -2.38 -0.02 1.70 16 Total: -1.00 -72.46 382.04 0.23 -72.23 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.09 Total: 29.24 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 5.98 Total: 9.30 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -6.30 Total: -128.76 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -1.26 Total: -28.27 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.90 Total: 46.27 kcal Total: -72.46 0.23 -72.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036313800.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.840 kcal (2) G-P(sol) polarization free energy of solvation -72.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds