Wall clock time and date at job start Tue Mar 31 2020 17:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35918 * 117.00170 * 2 1 4 4 C 1.38849 * 120.40512 * 359.97238 * 3 2 1 5 5 N 1.31881 * 121.00253 * 180.02562 * 4 3 2 6 6 C 1.31685 * 121.94055 * 359.70127 * 5 4 3 7 7 C 1.39520 * 120.68827 * 0.59258 * 6 5 4 8 8 C 1.47854 * 120.53197 * 179.69899 * 7 6 5 9 9 O 1.21549 * 120.00058 * 126.06850 * 8 7 6 10 10 N 1.34776 * 119.99885 * 306.07050 * 8 7 6 11 11 C 1.46926 * 120.63035 * 353.90044 * 10 8 7 12 12 C 1.52758 * 109.00822 * 233.58559 * 11 10 8 13 13 C 1.53038 * 109.38394 * 305.58857 * 12 11 10 14 14 H 1.08999 * 109.46268 * 301.21689 * 13 12 11 15 15 N 1.46502 * 109.46032 * 181.26041 * 13 12 11 16 16 C 1.36935 * 120.00320 * 84.93123 * 15 13 12 17 17 H 1.08005 * 119.99544 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00556 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99762 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00330 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47678 * 90.00090 * 20 18 16 22 22 H 1.48500 * 109.47327 * 210.00116 * 20 18 16 23 23 H 1.48506 * 109.47275 * 330.00061 * 20 18 16 24 24 C 1.53041 * 109.53787 * 61.24109 * 13 12 11 25 25 C 1.46926 * 120.62875 * 174.18314 * 10 8 7 26 26 H 1.09001 * 109.58494 * 246.15360 * 25 10 8 27 27 C 1.53001 * 109.58961 * 6.58204 * 25 10 8 28 28 C 1.38840 * 120.40928 * 180.02562 * 3 2 1 29 29 C 1.50704 * 120.87729 * 359.97438 * 28 3 2 30 30 H 1.08997 * 109.47038 * 60.00458 * 1 2 3 31 31 H 1.09003 * 109.47111 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47135 * 300.00091 * 1 2 3 33 33 H 1.08005 * 119.49806 * 0.05061 * 4 3 2 34 34 H 1.08001 * 119.65719 * 180.28847 * 6 5 4 35 35 H 1.09002 * 109.58531 * 353.41881 * 11 10 8 36 36 H 1.08998 * 109.58638 * 113.84652 * 11 10 8 37 37 H 1.09005 * 109.56605 * 185.55294 * 12 11 10 38 38 H 1.09001 * 109.36297 * 65.50096 * 12 11 10 39 39 H 0.97006 * 119.99856 * 264.93100 * 15 13 12 40 40 H 0.97005 * 119.99935 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.49704 * 178.68009 * 24 13 12 42 42 H 1.08998 * 109.52593 * 58.60341 * 24 13 12 43 43 H 1.08999 * 109.47362 * 55.27712 * 27 25 10 44 44 H 1.08993 * 109.47474 * 175.28168 * 27 25 10 45 45 H 1.09000 * 109.46754 * 295.28000 * 27 25 10 46 46 H 1.08993 * 109.47131 * 274.89749 * 29 28 3 47 47 H 1.08999 * 109.46725 * 34.89688 * 29 28 3 48 48 H 1.09002 * 109.47055 * 154.89097 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3808 -0.0006 5 7 1.8846 3.5621 -0.0011 6 6 3.1953 3.6891 0.0047 7 6 4.0199 2.5636 -0.0006 8 6 5.4911 2.7104 -0.0007 9 8 6.1578 2.1502 0.8473 10 7 6.0930 3.4652 -0.9412 11 6 5.3177 4.0392 -2.0494 12 6 5.9704 3.6410 -3.3719 13 6 7.4440 4.0534 -3.3554 14 1 7.5182 5.1300 -3.2019 15 7 8.0642 3.6994 -4.6346 16 6 7.9713 4.5541 -5.7005 17 1 7.4410 5.4894 -5.5979 18 6 8.5593 4.2189 -6.9123 19 7 9.2059 3.0793 -7.0371 20 14 8.4331 5.3851 -8.3660 21 1 9.5846 6.3226 -8.3501 22 1 8.4475 4.6048 -9.6294 23 1 7.1666 6.1552 -8.2743 24 6 8.1666 3.3253 -2.2197 25 6 7.5379 3.7246 -0.8810 26 1 7.7114 4.7850 -0.6976 27 6 8.1611 2.8975 0.2452 28 6 3.4320 1.2935 -0.0005 29 6 4.2810 0.0484 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2197 2.3225 -0.0002 34 1 3.6367 4.6748 0.0088 35 1 4.2972 3.6575 -2.0176 36 1 5.3065 5.1257 -1.9632 37 1 5.4616 4.1420 -4.1955 38 1 5.8962 2.5612 -3.5008 39 1 8.5408 2.8595 -4.7266 40 1 9.6166 2.8449 -7.8841 41 1 9.2210 3.6016 -2.2232 42 1 8.0723 2.2484 -2.3591 43 1 7.9193 1.8447 0.0996 44 1 9.2433 3.0265 0.2348 45 1 7.7645 3.2321 1.2038 46 1 4.4135 -0.3010 1.0233 47 1 3.7889 -0.7267 -0.5881 48 1 5.2543 0.2723 -0.4371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044648667.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:22 Heat of formation + Delta-G solvation = -29.700200 kcal Electronic energy + Delta-G solvation = -29589.336321 eV Core-core repulsion = 25644.739263 eV Total energy + Delta-G solvation = -3944.597058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.31316 -41.15743 -39.16629 -38.66024 -36.21517 -35.04853 -34.06830 -33.65324 -31.67917 -30.87851 -28.99058 -28.58293 -28.24954 -26.08831 -25.20765 -24.35371 -23.60458 -22.73019 -21.63754 -20.51975 -19.19039 -18.80129 -18.54731 -17.50640 -17.24075 -17.11296 -16.87301 -16.69736 -16.31066 -15.53308 -15.48721 -15.37807 -15.14467 -14.79748 -14.66762 -14.60196 -14.25238 -13.94263 -13.86642 -13.60338 -13.49454 -13.35383 -13.09682 -12.91261 -12.85840 -12.77191 -12.69193 -12.61972 -12.35555 -12.16899 -12.02590 -11.95851 -11.70497 -11.37406 -10.91217 -10.88994 -10.56681 -10.06641 -9.64493 -9.50933 -9.00175 -7.92314 -5.21074 -0.36202 0.08914 1.46115 1.49021 1.50084 1.58271 1.83043 2.23857 2.57089 2.59074 3.23804 3.40811 3.41344 3.48851 3.60052 3.74000 3.81022 3.93471 4.04042 4.09121 4.17039 4.24589 4.33575 4.36649 4.40632 4.45204 4.55487 4.60320 4.62151 4.63594 4.70808 4.75893 4.77376 4.86424 4.98417 5.00895 5.03601 5.06723 5.16544 5.26511 5.31312 5.42920 5.49490 5.54711 5.68347 6.14215 6.28989 6.32098 6.73853 7.03379 7.35348 8.10976 8.33840 9.31363 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.003026 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.989420 B = 9252.319883 C =10149.785447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.073 3.927 4 C 0.038 3.962 5 N -0.465 5.465 6 C 0.098 3.902 7 C -0.153 4.153 8 C 0.568 3.432 9 O -0.546 6.546 10 N -0.593 5.593 11 C 0.115 3.885 12 C -0.140 4.140 13 C 0.175 3.825 14 H 0.054 0.946 15 N -0.738 5.738 16 C -0.234 4.234 17 H 0.080 0.920 18 C -0.078 4.078 19 N -0.972 5.972 20 Si 0.970 3.030 21 H -0.288 1.288 22 H -0.300 1.300 23 H -0.267 1.267 24 C -0.124 4.124 25 C 0.152 3.848 26 H 0.095 0.905 27 C -0.125 4.125 28 C -0.047 4.047 29 C -0.101 4.101 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.192 0.808 34 H 0.179 0.821 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.039 0.961 39 H 0.370 0.630 40 H 0.249 0.751 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.044 -2.148 18.147 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.232 6.232 3 C 0.025 3.975 4 C -0.119 4.119 5 N -0.174 5.174 6 C -0.060 4.060 7 C -0.158 4.158 8 C 0.356 3.644 9 O -0.425 6.425 10 N -0.325 5.325 11 C -0.007 4.007 12 C -0.181 4.181 13 C 0.066 3.934 14 H 0.072 0.928 15 N -0.377 5.377 16 C -0.365 4.365 17 H 0.098 0.902 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.800 3.200 21 H -0.216 1.216 22 H -0.227 1.227 23 H -0.191 1.191 24 C -0.163 4.163 25 C 0.049 3.951 26 H 0.113 0.887 27 C -0.182 4.182 28 C -0.056 4.056 29 C -0.158 4.158 30 H 0.089 0.911 31 H 0.141 0.859 32 H 0.091 0.909 33 H 0.209 0.791 34 H 0.196 0.804 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.201 0.799 40 H 0.058 0.942 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.176 -1.738 18.475 25.975 hybrid contribution 0.754 -0.720 -1.338 1.696 sum -17.422 -2.458 17.136 24.560 Atomic orbital electron populations 1.23502 0.75593 1.06282 1.02860 1.86093 1.23972 1.24933 1.88194 1.19735 0.91763 0.86983 0.99061 1.23519 1.02059 0.86309 1.00032 1.67616 1.11716 1.26627 1.11408 1.23029 0.88448 0.98373 0.96172 1.20765 0.94492 0.94522 1.06036 1.18164 0.86748 0.78174 0.81356 1.90844 1.64495 1.47381 1.39753 1.48165 1.09027 1.50192 1.25089 1.21837 0.94852 0.99753 0.84291 1.22378 0.98578 1.00458 0.96673 1.20408 0.90860 0.97352 0.84752 0.92798 1.42664 1.64420 1.22348 1.08234 1.19636 1.26904 0.99768 0.90234 0.90197 1.25544 1.01577 0.99089 1.00823 1.69829 1.42255 1.24776 1.25473 0.85182 0.78055 0.77928 0.78875 1.21573 1.22695 1.19142 1.22159 1.00175 0.99982 0.93965 1.21357 0.78091 1.00699 0.94916 0.88699 1.22075 0.99034 1.00003 0.97107 1.19858 0.91974 0.95440 0.98298 1.20605 0.97896 0.93864 1.03392 0.91121 0.85947 0.90889 0.79091 0.80422 0.89369 0.88549 0.91526 0.94174 0.79890 0.94221 0.90766 0.93348 0.92889 0.92485 0.91633 0.89879 0.89913 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.20 16 2 O -0.32 -5.48 9.76 -92.63 -0.90 -6.38 16 3 C 0.07 1.46 6.68 22.56 0.15 1.61 16 4 C 0.04 0.68 10.21 84.83 0.87 1.54 16 5 N -0.46 -9.75 10.34 -194.39 -2.01 -11.76 16 6 C 0.10 2.08 8.98 85.02 0.76 2.84 16 7 C -0.15 -3.73 4.60 -20.01 -0.09 -3.82 16 8 C 0.57 15.53 6.10 86.79 0.53 16.06 16 9 O -0.55 -17.21 11.44 -3.87 -0.04 -17.25 16 10 N -0.59 -15.35 2.98 -799.23 -2.38 -17.73 16 11 C 0.12 2.80 5.56 86.22 0.48 3.28 16 12 C -0.14 -4.58 5.64 30.53 0.17 -4.41 16 13 C 0.17 6.45 2.73 45.02 0.12 6.58 16 14 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 15 N -0.74 -36.19 5.12 -322.81 -1.65 -37.84 16 16 C -0.23 -12.55 9.93 84.03 0.83 -11.71 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 18 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 19 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 20 Si 0.97 45.48 29.55 68.60 2.03 47.51 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 C -0.12 -3.99 4.84 30.67 0.15 -3.84 16 25 C 0.15 4.03 3.49 44.98 0.16 4.19 16 26 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 27 C -0.12 -3.34 7.59 71.98 0.55 -2.80 16 28 C -0.05 -1.12 5.96 -19.30 -0.12 -1.24 16 29 C -0.10 -2.40 9.10 71.24 0.65 -1.75 16 30 H 0.07 0.40 7.67 -2.39 -0.02 0.38 16 31 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.36 7.67 -2.39 -0.02 0.34 16 33 H 0.19 2.01 6.30 -2.91 -0.02 1.99 16 34 H 0.18 3.06 7.77 -2.91 -0.02 3.04 16 35 H 0.09 2.00 5.41 -2.39 -0.01 1.99 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.37 19.96 7.80 -92.70 -0.72 19.24 16 40 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.05 1.63 6.67 -2.39 -0.02 1.61 16 44 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 1.79 6.82 -2.39 -0.02 1.78 16 46 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.08 1.78 7.77 -2.39 -0.02 1.76 16 48 H 0.05 1.51 6.70 -2.39 -0.02 1.50 16 Total: -1.00 -69.17 378.39 2.36 -66.81 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.25 Total: 32.00 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 6.79 Total: 3.75 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -5.76 Total: -126.43 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.95 Total: -23.63 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -69.17 2.36 -66.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044648667.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.107 kcal (2) G-P(sol) polarization free energy of solvation -69.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds