Wall clock time and date at job start Tue Mar 31 2020 17:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35919 * 116.99805 * 2 1 4 4 C 1.38858 * 120.40799 * 0.24367 * 3 2 1 5 5 N 1.31875 * 121.00201 * 180.30963 * 4 3 2 6 6 C 1.31679 * 121.94229 * 359.72117 * 5 4 3 7 7 C 1.39528 * 120.69196 * 359.97438 * 6 5 4 8 8 C 1.47857 * 120.53337 * 179.97438 * 7 6 5 9 9 O 1.21552 * 119.99918 * 231.04455 * 8 7 6 10 10 N 1.34774 * 119.99885 * 51.04779 * 8 7 6 11 11 C 1.46934 * 120.62866 * 5.18569 * 10 8 7 12 12 C 1.53628 * 108.54012 * 126.36730 * 11 10 8 13 13 C 1.53049 * 109.23966 * 54.85678 * 12 11 10 14 14 H 1.09001 * 109.44442 * 58.52294 * 13 12 11 15 15 N 1.46505 * 109.45701 * 178.48755 * 13 12 11 16 16 C 1.36934 * 120.00167 * 275.06755 * 15 13 12 17 17 H 1.08006 * 119.99709 * 0.02562 * 16 15 13 18 18 C 1.38804 * 120.00222 * 180.02562 * 16 15 13 19 19 N 1.31627 * 119.99788 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00369 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47076 * 89.99750 * 20 18 16 22 22 H 1.48499 * 109.47379 * 210.00138 * 20 18 16 23 23 H 1.48501 * 109.46992 * 330.00031 * 20 18 16 24 24 C 1.53037 * 109.53592 * 298.51009 * 13 12 11 25 25 C 1.46922 * 120.63062 * 185.46611 * 10 8 7 26 26 H 1.09008 * 109.58582 * 113.80257 * 25 10 8 27 27 C 1.52993 * 109.58825 * 353.37346 * 25 10 8 28 28 C 1.38843 * 120.40950 * 179.97438 * 3 2 1 29 29 C 1.50707 * 120.87368 * 359.97438 * 28 3 2 30 30 H 1.09001 * 109.46655 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47322 * 299.99751 * 1 2 3 32 32 H 1.09002 * 109.47181 * 60.00372 * 1 2 3 33 33 H 1.07998 * 119.49949 * 0.03373 * 4 3 2 34 34 H 1.08008 * 119.65804 * 180.02562 * 6 5 4 35 35 H 1.08991 * 109.58514 * 246.19844 * 11 10 8 36 36 H 1.08994 * 109.58493 * 6.63203 * 11 10 8 37 37 H 1.08996 * 109.63508 * 294.86880 * 12 11 10 38 38 H 1.08992 * 109.43141 * 174.72333 * 12 11 10 39 39 H 0.96995 * 119.99244 * 95.07005 * 15 13 12 40 40 H 0.96999 * 119.99682 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.49813 * 301.41144 * 24 13 12 42 42 H 1.09003 * 109.51808 * 181.33372 * 24 13 12 43 43 H 1.09001 * 109.47316 * 63.74277 * 27 25 10 44 44 H 1.09000 * 109.47308 * 183.74514 * 27 25 10 45 45 H 1.09001 * 109.47397 * 303.74434 * 27 25 10 46 46 H 1.08999 * 109.46972 * 263.95734 * 29 28 3 47 47 H 1.08998 * 109.46602 * 143.96257 * 29 28 3 48 48 H 1.08992 * 109.47179 * 23.95925 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3810 0.0051 5 7 1.8844 3.5621 -0.0010 6 6 3.1951 3.6892 -0.0066 7 6 4.0197 2.5638 -0.0058 8 6 5.4910 2.7106 -0.0127 9 8 6.1579 2.1092 -0.8318 10 7 6.0925 3.5111 0.8893 11 6 5.3135 4.1551 1.9558 12 6 5.9615 3.8160 3.3069 13 6 7.4370 4.2212 3.2744 14 1 7.5158 5.2879 3.0641 15 7 8.0509 3.9331 4.5731 16 6 7.9574 4.8435 5.5917 17 1 7.4307 5.7738 5.4378 18 6 8.5395 4.5708 6.8219 19 7 9.1809 3.4368 7.0095 20 14 8.4114 5.8123 8.2117 21 1 7.1887 5.5386 9.0088 22 1 9.6069 5.7023 9.0856 23 1 8.3366 7.1831 7.6455 24 6 8.1607 3.4312 2.1817 25 6 7.5387 3.7613 0.8213 26 1 7.7173 4.8099 0.5827 27 6 8.1627 2.8734 -0.2571 28 6 3.4320 1.2937 0.0005 29 6 4.2809 0.0485 0.0017 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2196 2.3227 0.0096 34 1 3.6364 4.6750 -0.0110 35 1 5.3144 5.2349 1.8078 36 1 4.2895 3.7822 1.9364 37 1 5.8824 2.7448 3.4924 38 1 5.4517 4.3618 4.1007 39 1 8.5236 3.0975 4.7112 40 1 9.5874 3.2460 7.8694 41 1 8.0610 2.3636 2.3779 42 1 9.2164 3.7027 2.1746 43 1 7.7582 3.1466 -1.2317 44 1 9.2439 3.0116 -0.2608 45 1 7.9306 1.8293 -0.0472 46 1 4.5745 -0.1901 1.0239 47 1 5.1724 0.2161 -0.6026 48 1 3.7099 -0.7810 -0.4153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044648668.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:25 Heat of formation + Delta-G solvation = -28.699900 kcal Electronic energy + Delta-G solvation = -29581.291298 eV Core-core repulsion = 25636.737616 eV Total energy + Delta-G solvation = -3944.553682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.31807 -41.14925 -39.16054 -38.66171 -36.22680 -35.01426 -34.09279 -33.63087 -31.64927 -30.87082 -28.97792 -28.58031 -28.23417 -26.08566 -25.19896 -24.38454 -23.60120 -22.71737 -21.63450 -20.52628 -19.19040 -18.81095 -18.54816 -17.53005 -17.20325 -17.09877 -16.85764 -16.69466 -16.32006 -15.52701 -15.49081 -15.37557 -15.14875 -14.84280 -14.65220 -14.57441 -14.22149 -13.98075 -13.85310 -13.63529 -13.46396 -13.32927 -13.10016 -12.90407 -12.84367 -12.77928 -12.67162 -12.59284 -12.36003 -12.16087 -12.03010 -11.97094 -11.69902 -11.37164 -10.90790 -10.88924 -10.51886 -10.06438 -9.64297 -9.50152 -9.00035 -7.92306 -5.21055 -0.37892 0.08971 1.47432 1.49003 1.49943 1.58287 1.83172 2.23928 2.57052 2.59229 3.23745 3.40908 3.41916 3.49347 3.60944 3.74192 3.80878 3.93747 4.04184 4.09005 4.16883 4.24823 4.33437 4.36278 4.40275 4.50247 4.55533 4.60300 4.62126 4.63766 4.70741 4.75360 4.76970 4.86534 4.99109 5.02074 5.05320 5.10399 5.17303 5.27522 5.33024 5.43327 5.49816 5.54809 5.68545 6.14088 6.29081 6.32545 6.73508 7.03734 7.35393 8.11077 8.33897 9.31377 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.003010 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.609129 B = 9301.320742 C =10192.587242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.071 3.929 4 C 0.039 3.961 5 N -0.465 5.465 6 C 0.098 3.902 7 C -0.155 4.155 8 C 0.568 3.432 9 O -0.546 6.546 10 N -0.592 5.592 11 C 0.113 3.887 12 C -0.139 4.139 13 C 0.174 3.826 14 H 0.054 0.946 15 N -0.738 5.738 16 C -0.233 4.233 17 H 0.080 0.920 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.970 3.030 21 H -0.289 1.289 22 H -0.300 1.300 23 H -0.267 1.267 24 C -0.124 4.124 25 C 0.152 3.848 26 H 0.095 0.905 27 C -0.125 4.125 28 C -0.044 4.044 29 C -0.117 4.117 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.192 0.808 34 H 0.179 0.821 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.370 0.630 40 H 0.249 0.751 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.807 -2.977 -18.248 25.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.232 6.232 3 C 0.023 3.977 4 C -0.118 4.118 5 N -0.174 5.174 6 C -0.060 4.060 7 C -0.160 4.160 8 C 0.356 3.644 9 O -0.425 6.425 10 N -0.324 5.324 11 C -0.010 4.010 12 C -0.180 4.180 13 C 0.066 3.934 14 H 0.072 0.928 15 N -0.377 5.377 16 C -0.365 4.365 17 H 0.098 0.902 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.799 3.201 21 H -0.216 1.216 22 H -0.227 1.227 23 H -0.191 1.191 24 C -0.163 4.163 25 C 0.050 3.950 26 H 0.113 0.887 27 C -0.182 4.182 28 C -0.053 4.053 29 C -0.174 4.174 30 H 0.141 0.859 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.209 0.791 34 H 0.196 0.804 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.201 0.799 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.097 0.903 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.922 -2.577 -18.578 25.942 hybrid contribution 0.685 -0.673 1.384 1.684 sum -17.237 -3.250 -17.195 24.563 Atomic orbital electron populations 1.23500 0.75598 1.06280 1.02852 1.86089 1.23966 1.24947 1.88243 1.19748 0.91843 0.86964 0.99118 1.23522 1.02060 0.86322 0.99932 1.67614 1.11733 1.26618 1.11471 1.23060 0.88473 0.98412 0.96081 1.20739 0.94545 0.94527 1.06195 1.18165 0.86709 0.78578 0.80946 1.90813 1.64428 1.46896 1.40393 1.48169 1.08872 1.46823 1.28536 1.22079 0.94934 0.98923 0.85031 1.22530 0.98516 1.00532 0.96451 1.20415 0.90918 0.97441 0.84626 0.92803 1.42664 1.64837 1.20931 1.09241 1.19636 1.27052 0.98586 0.91241 0.90191 1.25546 1.01605 0.99326 1.00569 1.69830 1.42566 1.25799 1.24149 0.85183 0.76385 0.79100 0.79385 1.21646 1.22651 1.19125 1.22158 1.00179 0.99877 0.94051 1.21355 0.78049 1.00756 0.94886 0.88700 1.22076 0.99035 0.99397 0.97706 1.19862 0.91932 0.95491 0.98023 1.20790 0.99596 0.93964 1.03004 0.85944 0.91123 0.90903 0.79104 0.80362 0.88406 0.89197 0.94144 0.91606 0.79895 0.94224 0.93348 0.90777 0.91483 0.92490 0.92994 0.91007 0.90276 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.20 16 2 O -0.32 -5.53 9.57 -92.64 -0.89 -6.42 16 3 C 0.07 1.44 6.68 22.56 0.15 1.59 16 4 C 0.04 0.70 10.21 84.83 0.87 1.56 16 5 N -0.47 -9.79 10.34 -194.39 -2.01 -11.80 16 6 C 0.10 2.08 8.81 85.03 0.75 2.83 16 7 C -0.15 -3.77 4.74 -20.01 -0.09 -3.87 16 8 C 0.57 15.45 6.66 86.79 0.58 16.03 16 9 O -0.55 -17.02 10.47 -3.88 -0.04 -17.07 16 10 N -0.59 -15.24 2.97 -797.57 -2.37 -17.60 16 11 C 0.11 2.72 5.44 86.51 0.47 3.19 16 12 C -0.14 -4.55 5.68 30.82 0.17 -4.38 16 13 C 0.17 6.43 2.73 45.02 0.12 6.55 16 14 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 15 N -0.74 -36.16 5.12 -322.80 -1.65 -37.81 16 16 C -0.23 -12.53 9.93 84.03 0.83 -11.69 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 18 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 19 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 20 Si 0.97 45.48 29.55 68.60 2.03 47.51 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 22 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 C -0.12 -3.97 4.84 30.67 0.15 -3.82 16 25 C 0.15 4.01 3.49 44.97 0.16 4.17 16 26 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 27 C -0.12 -3.32 7.59 71.98 0.55 -2.77 16 28 C -0.04 -1.07 5.96 -19.30 -0.12 -1.18 16 29 C -0.12 -2.79 9.45 71.24 0.67 -2.12 16 30 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.41 7.66 -2.39 -0.02 0.39 16 32 H 0.07 0.37 7.69 -2.39 -0.02 0.35 16 33 H 0.19 2.03 6.30 -2.91 -0.02 2.01 16 34 H 0.18 3.06 7.52 -2.91 -0.02 3.04 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.90 16 36 H 0.09 2.01 5.23 -2.39 -0.01 2.00 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.37 19.95 7.80 -92.71 -0.72 19.22 16 40 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.07 1.82 6.73 -2.39 -0.02 1.81 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.05 1.58 6.76 -2.39 -0.02 1.56 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.08 2.13 5.96 -2.39 -0.01 2.11 16 48 H 0.09 1.81 7.45 -2.39 -0.02 1.79 16 Total: -1.00 -69.04 376.51 2.45 -66.58 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.26 Total: 32.41 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 6.84 Total: 3.31 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -5.75 Total: -126.33 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.93 Total: -23.48 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -69.04 2.45 -66.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044648668.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.884 kcal (2) G-P(sol) polarization free energy of solvation -69.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds