Wall clock time and date at job start Tue Mar 31 2020 17:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35923 * 117.00172 * 2 1 4 4 C 1.38854 * 120.40123 * 359.97438 * 3 2 1 5 5 N 1.31881 * 120.99604 * 180.02562 * 4 3 2 6 6 C 1.31680 * 121.94478 * 359.97358 * 5 4 3 7 7 C 1.39529 * 120.69117 * 359.97438 * 6 5 4 8 8 C 1.47849 * 120.53154 * 180.02562 * 7 6 5 9 9 O 1.21555 * 119.99999 * 233.91717 * 8 7 6 10 10 N 1.34773 * 120.00273 * 53.91595 * 8 7 6 11 11 C 1.46927 * 120.62821 * 5.76908 * 10 8 7 12 12 C 1.53192 * 108.77470 * 126.36688 * 11 10 8 13 13 C 1.53042 * 109.31327 * 54.63734 * 12 11 10 14 14 H 1.09000 * 109.45778 * 58.64019 * 13 12 11 15 15 N 1.46496 * 109.45877 * 178.61263 * 13 12 11 16 16 C 1.36937 * 120.00310 * 274.99760 * 15 13 12 17 17 H 1.08002 * 119.99969 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00159 * 180.02562 * 16 15 13 19 19 N 1.31621 * 120.00064 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99787 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46698 * 90.00450 * 20 18 16 22 22 H 1.48499 * 109.47195 * 210.00100 * 20 18 16 23 23 H 1.48492 * 109.47486 * 330.00402 * 20 18 16 24 24 C 1.53033 * 109.53565 * 298.63330 * 13 12 11 25 25 C 1.46922 * 120.63391 * 185.48776 * 10 8 7 26 26 H 1.08998 * 109.58680 * 353.41907 * 25 10 8 27 27 C 1.53004 * 109.58730 * 113.84364 * 25 10 8 28 28 C 1.38840 * 120.40694 * 179.72296 * 3 2 1 29 29 C 1.50694 * 120.88026 * 359.97438 * 28 3 2 30 30 H 1.08997 * 109.47340 * 60.00312 * 1 2 3 31 31 H 1.09002 * 109.47160 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47220 * 300.00205 * 1 2 3 33 33 H 1.08003 * 119.49917 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.65521 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.59139 * 246.15480 * 11 10 8 36 36 H 1.09009 * 109.58928 * 6.58240 * 11 10 8 37 37 H 1.09007 * 109.49604 * 174.58680 * 12 11 10 38 38 H 1.08999 * 109.50015 * 294.64961 * 12 11 10 39 39 H 0.97008 * 120.00175 * 94.99849 * 15 13 12 40 40 H 0.96998 * 119.99461 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.50028 * 181.31634 * 24 13 12 42 42 H 1.09005 * 109.50019 * 301.38079 * 24 13 12 43 43 H 1.09008 * 109.46742 * 60.00136 * 27 25 10 44 44 H 1.08995 * 109.46752 * 179.97438 * 27 25 10 45 45 H 1.08999 * 109.47091 * 300.00638 * 27 25 10 46 46 H 1.08999 * 109.47197 * 95.03332 * 29 28 3 47 47 H 1.09003 * 109.47562 * 215.03343 * 29 28 3 48 48 H 1.09002 * 109.47245 * 335.03364 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8846 3.5621 -0.0010 6 6 3.1952 3.6892 -0.0006 7 6 4.0199 2.5636 0.0011 8 6 5.4910 2.7104 0.0022 9 8 6.1581 2.1531 -0.8476 10 7 6.0926 3.4621 0.9453 11 6 5.3157 4.0384 2.0512 12 6 5.9676 3.6313 3.3764 13 6 7.4417 4.0425 3.3626 14 1 7.5168 5.1194 3.2118 15 7 8.0602 3.6844 4.6414 16 6 7.9680 4.5369 5.7091 17 1 7.4390 5.4731 5.6086 18 6 8.5545 4.1978 6.9207 19 7 9.1997 3.0571 7.0432 20 14 8.4293 5.3611 8.3769 21 1 7.2096 5.0421 9.1617 22 1 9.6279 5.2049 9.2396 23 1 8.3509 6.7607 7.8872 24 6 8.1648 3.3170 2.2257 25 6 7.5387 3.7158 0.8905 26 1 7.9832 3.1255 0.0892 27 6 7.7892 5.2035 0.6350 28 6 3.4320 1.2935 0.0058 29 6 4.2809 0.0485 0.0128 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.2196 2.3225 -0.0005 34 1 3.6365 4.6749 -0.0006 35 1 5.3091 5.1250 1.9659 36 1 4.2937 3.6608 2.0156 37 1 5.4583 4.1304 4.2008 38 1 5.8918 2.5513 3.5025 39 1 8.5351 2.8434 4.7319 40 1 9.6098 2.8204 7.8897 41 1 9.2194 3.5924 2.2310 42 1 8.0694 2.2398 2.3626 43 1 7.3487 5.7898 1.4416 44 1 8.8624 5.3895 0.5952 45 1 7.3346 5.4909 -0.3131 46 1 4.5645 -0.2037 -1.0090 47 1 5.1783 0.2238 0.6061 48 1 3.7139 -0.7754 0.4462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044648670.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:28 Heat of formation + Delta-G solvation = -23.868763 kcal Electronic energy + Delta-G solvation = -29546.427303 eV Core-core repulsion = 25602.083115 eV Total energy + Delta-G solvation = -3944.344188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.34822 -40.06315 -38.37380 -37.56319 -34.60246 -34.04663 -32.74876 -31.84286 -30.69444 -29.33882 -28.13865 -27.89593 -27.30947 -24.70554 -23.87641 -23.11660 -22.60668 -21.65406 -20.56886 -18.80298 -18.01933 -17.75052 -17.09097 -16.74238 -16.49530 -16.25000 -15.84785 -15.10572 -14.90741 -14.43090 -14.23947 -14.03191 -13.92141 -13.52875 -13.51707 -13.25185 -13.05962 -13.01861 -12.85426 -12.76854 -12.55659 -12.32975 -11.98013 -11.86722 -11.81143 -11.63135 -11.30526 -10.95392 -10.88648 -10.78713 -10.48369 -10.32814 -10.22172 -9.77129 -9.68367 -9.64283 -9.47074 -8.93341 -8.73249 -8.56422 -7.00022 -5.79704 -3.08954 0.50367 0.94109 2.47643 2.75913 3.04696 3.40908 3.44642 3.46303 3.47958 4.08118 4.21323 4.35358 4.47278 4.55333 4.59873 4.73636 4.83831 5.00110 5.02394 5.11847 5.14636 5.21952 5.29554 5.30424 5.43914 5.49455 5.54646 5.55639 5.61356 5.72554 5.78640 5.86728 5.90809 5.93265 6.03186 6.13959 6.16449 6.26831 6.36738 6.43513 6.51045 6.60059 6.80620 6.86954 7.01979 7.40630 7.57112 7.66206 8.08485 8.38525 9.49796 10.07257 10.41719 11.42811 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.003006 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.315527 B = 9313.996987 C =10082.318367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.071 3.929 4 C 0.033 3.967 5 N -0.453 5.453 6 C 0.100 3.900 7 C -0.138 4.138 8 C 0.567 3.433 9 O -0.534 6.534 10 N -0.590 5.590 11 C 0.103 3.897 12 C -0.150 4.150 13 C 0.179 3.821 14 H 0.052 0.948 15 N -0.724 5.724 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.134 4.134 25 C 0.142 3.858 26 H 0.097 0.903 27 C -0.161 4.161 28 C -0.026 4.026 29 C -0.109 4.109 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.709 -2.650 -16.762 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.024 3.976 4 C -0.124 4.124 5 N -0.162 5.162 6 C -0.059 4.059 7 C -0.143 4.143 8 C 0.354 3.646 9 O -0.411 6.411 10 N -0.323 5.323 11 C -0.020 4.020 12 C -0.192 4.192 13 C 0.069 3.931 14 H 0.070 0.930 15 N -0.364 5.364 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.173 4.173 25 C 0.039 3.961 26 H 0.115 0.885 27 C -0.219 4.219 28 C -0.035 4.035 29 C -0.165 4.165 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.784 -2.266 -17.059 23.351 hybrid contribution 0.149 -0.261 1.082 1.123 sum -15.635 -2.527 -15.977 22.497 Atomic orbital electron populations 1.23151 0.77879 1.04535 1.01615 1.86095 1.21609 1.25535 1.88549 1.19702 0.92195 0.86080 0.99651 1.23029 1.00656 0.87066 1.01645 1.67540 1.11744 1.25938 1.10990 1.22820 0.88418 0.98122 0.96517 1.20746 0.95084 0.93894 1.04588 1.17950 0.86306 0.78728 0.81649 1.90779 1.65146 1.46835 1.38345 1.48185 1.09133 1.50031 1.24917 1.21981 0.94894 0.98370 0.86763 1.22682 1.00046 1.01823 0.94602 1.20193 0.89744 0.97008 0.86143 0.93000 1.42434 1.64124 1.23138 1.06691 1.19219 1.28669 0.99587 0.89599 0.91182 1.24747 1.00765 0.97409 0.97968 1.69663 1.40399 1.22682 1.25260 0.86217 0.77049 0.80165 0.82912 1.21754 1.21795 1.20742 1.22142 1.00392 1.01174 0.93565 1.21160 0.78953 0.96792 0.99209 0.88468 1.22162 1.02473 0.95563 1.01734 1.19701 0.90926 0.95504 0.97335 1.20701 0.98679 0.93496 1.03655 0.92367 0.87750 0.92246 0.82150 0.81909 0.91068 0.90617 0.90569 0.92243 0.78278 0.93493 0.90368 0.91831 0.91510 0.91146 0.92812 0.89775 0.90760 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.92 9.59 -19.50 -0.19 -3.11 16 3 C 0.07 0.78 6.68 -39.13 -0.26 0.52 16 4 C 0.03 0.34 10.21 -17.30 -0.18 0.16 16 5 N -0.45 -5.33 10.34 -12.79 -0.13 -5.46 16 6 C 0.10 1.17 8.96 -17.14 -0.15 1.02 16 7 C -0.14 -1.79 4.61 -104.84 -0.48 -2.27 16 8 C 0.57 8.24 6.23 -12.33 -0.08 8.16 16 9 O -0.53 -9.10 15.70 5.32 0.08 -9.02 16 10 N -0.59 -8.10 2.68 -166.57 -0.45 -8.54 16 11 C 0.10 1.35 5.18 -3.71 -0.02 1.33 16 12 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 13 C 0.18 3.32 2.53 -67.89 -0.17 3.14 16 14 H 0.05 0.97 6.43 -51.93 -0.33 0.63 16 15 N -0.72 -17.43 5.12 -53.39 -0.27 -17.70 16 16 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 20 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.13 -2.16 4.99 -26.84 -0.13 -2.29 16 25 C 0.14 1.97 3.20 -67.82 -0.22 1.75 16 26 H 0.10 1.41 7.00 -51.93 -0.36 1.05 16 27 C -0.16 -1.94 9.02 37.16 0.34 -1.61 16 28 C -0.03 -0.32 5.96 -103.76 -0.62 -0.94 16 29 C -0.11 -1.31 8.96 36.00 0.32 -0.98 16 30 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.26 7.67 -51.93 -0.40 -0.14 16 33 H 0.16 1.13 6.30 -52.48 -0.33 0.80 16 34 H 0.16 1.63 7.76 -52.48 -0.41 1.22 16 35 H 0.07 0.83 7.52 -51.93 -0.39 0.44 16 36 H 0.08 0.94 5.39 -51.92 -0.28 0.66 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.07 0.82 5.74 -51.92 -0.30 0.53 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.07 0.98 7.29 -51.93 -0.38 0.60 16 48 H 0.08 0.83 7.48 -51.93 -0.39 0.44 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -32.23 380.11 -7.80 -40.03 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.21 Total: 8.68 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.06 Total: -0.56 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.13 Total: -58.71 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.10 Total: -12.13 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.23 -7.80 -40.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044648670.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.163 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds