Wall clock time and date at job start Tue Mar 31 2020 17:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35923 * 117.00172 * 2 1 4 4 C 1.38854 * 120.40123 * 359.97438 * 3 2 1 5 5 N 1.31881 * 120.99604 * 180.02562 * 4 3 2 6 6 C 1.31680 * 121.94478 * 359.97358 * 5 4 3 7 7 C 1.39529 * 120.69117 * 359.97438 * 6 5 4 8 8 C 1.47849 * 120.53154 * 180.02562 * 7 6 5 9 9 O 1.21555 * 119.99999 * 233.91717 * 8 7 6 10 10 N 1.34773 * 120.00273 * 53.91595 * 8 7 6 11 11 C 1.46927 * 120.62821 * 5.76908 * 10 8 7 12 12 C 1.53192 * 108.77470 * 126.36688 * 11 10 8 13 13 C 1.53042 * 109.31327 * 54.63734 * 12 11 10 14 14 H 1.09000 * 109.45778 * 58.64019 * 13 12 11 15 15 N 1.46496 * 109.45877 * 178.61263 * 13 12 11 16 16 C 1.36937 * 120.00310 * 274.99760 * 15 13 12 17 17 H 1.08002 * 119.99969 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00159 * 180.02562 * 16 15 13 19 19 N 1.31621 * 120.00064 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99787 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46698 * 90.00450 * 20 18 16 22 22 H 1.48499 * 109.47195 * 210.00100 * 20 18 16 23 23 H 1.48492 * 109.47486 * 330.00402 * 20 18 16 24 24 C 1.53033 * 109.53565 * 298.63330 * 13 12 11 25 25 C 1.46922 * 120.63391 * 185.48776 * 10 8 7 26 26 H 1.08998 * 109.58680 * 353.41907 * 25 10 8 27 27 C 1.53004 * 109.58730 * 113.84364 * 25 10 8 28 28 C 1.38840 * 120.40694 * 179.72296 * 3 2 1 29 29 C 1.50694 * 120.88026 * 359.97438 * 28 3 2 30 30 H 1.08997 * 109.47340 * 60.00312 * 1 2 3 31 31 H 1.09002 * 109.47160 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47220 * 300.00205 * 1 2 3 33 33 H 1.08003 * 119.49917 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.65521 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.59139 * 246.15480 * 11 10 8 36 36 H 1.09009 * 109.58928 * 6.58240 * 11 10 8 37 37 H 1.09007 * 109.49604 * 174.58680 * 12 11 10 38 38 H 1.08999 * 109.50015 * 294.64961 * 12 11 10 39 39 H 0.97008 * 120.00175 * 94.99849 * 15 13 12 40 40 H 0.96998 * 119.99461 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.50028 * 181.31634 * 24 13 12 42 42 H 1.09005 * 109.50019 * 301.38079 * 24 13 12 43 43 H 1.09008 * 109.46742 * 60.00136 * 27 25 10 44 44 H 1.08995 * 109.46752 * 179.97438 * 27 25 10 45 45 H 1.08999 * 109.47091 * 300.00638 * 27 25 10 46 46 H 1.08999 * 109.47197 * 95.03332 * 29 28 3 47 47 H 1.09003 * 109.47562 * 215.03343 * 29 28 3 48 48 H 1.09002 * 109.47245 * 335.03364 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8846 3.5621 -0.0010 6 6 3.1952 3.6892 -0.0006 7 6 4.0199 2.5636 0.0011 8 6 5.4910 2.7104 0.0022 9 8 6.1581 2.1531 -0.8476 10 7 6.0926 3.4621 0.9453 11 6 5.3157 4.0384 2.0512 12 6 5.9676 3.6313 3.3764 13 6 7.4417 4.0425 3.3626 14 1 7.5168 5.1194 3.2118 15 7 8.0602 3.6844 4.6414 16 6 7.9680 4.5369 5.7091 17 1 7.4390 5.4731 5.6086 18 6 8.5545 4.1978 6.9207 19 7 9.1997 3.0571 7.0432 20 14 8.4293 5.3611 8.3769 21 1 7.2096 5.0421 9.1617 22 1 9.6279 5.2049 9.2396 23 1 8.3509 6.7607 7.8872 24 6 8.1648 3.3170 2.2257 25 6 7.5387 3.7158 0.8905 26 1 7.9832 3.1255 0.0892 27 6 7.7892 5.2035 0.6350 28 6 3.4320 1.2935 0.0058 29 6 4.2809 0.0485 0.0128 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.2196 2.3225 -0.0005 34 1 3.6365 4.6749 -0.0006 35 1 5.3091 5.1250 1.9659 36 1 4.2937 3.6608 2.0156 37 1 5.4583 4.1304 4.2008 38 1 5.8918 2.5513 3.5025 39 1 8.5351 2.8434 4.7319 40 1 9.6098 2.8204 7.8897 41 1 9.2194 3.5924 2.2310 42 1 8.0694 2.2398 2.3626 43 1 7.3487 5.7898 1.4416 44 1 8.8624 5.3895 0.5952 45 1 7.3346 5.4909 -0.3131 46 1 4.5645 -0.2037 -1.0090 47 1 5.1783 0.2238 0.6061 48 1 3.7139 -0.7754 0.4462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044648670.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:27 Heat of formation + Delta-G solvation = -44.846690 kcal Electronic energy + Delta-G solvation = -29547.336975 eV Core-core repulsion = 25602.083115 eV Total energy + Delta-G solvation = -3945.253859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.27644 -41.09768 -39.27272 -38.73675 -36.27014 -34.96637 -34.05627 -33.44305 -31.67598 -30.93013 -28.99737 -28.63928 -28.42898 -26.08629 -25.22560 -24.42190 -23.58454 -22.90289 -21.77044 -19.95181 -19.26436 -18.79336 -18.59233 -17.75934 -17.37210 -16.94853 -16.92331 -16.69047 -16.12380 -15.68009 -15.35420 -15.18547 -15.13620 -14.94129 -14.77315 -14.46216 -14.16102 -14.06009 -13.91907 -13.87268 -13.70861 -13.18614 -12.99757 -12.93151 -12.85814 -12.78180 -12.72310 -12.44935 -12.36749 -12.14987 -12.08022 -11.96319 -11.70243 -11.39070 -11.10634 -10.88506 -10.60628 -10.43961 -9.75315 -9.52147 -8.99392 -7.91739 -5.20341 -0.38727 0.07422 1.42194 1.49290 1.50186 1.58523 1.79537 2.22793 2.56320 2.58395 3.21010 3.39988 3.41600 3.46962 3.58069 3.75381 3.82677 3.92548 4.00997 4.08693 4.14624 4.24488 4.33826 4.36912 4.40911 4.44418 4.54712 4.55429 4.58521 4.60216 4.66692 4.75731 4.77640 4.83340 4.98632 5.01313 5.04357 5.05082 5.07278 5.25900 5.31409 5.33908 5.52406 5.54919 5.61104 6.13415 6.27014 6.30204 6.72028 6.95692 7.35927 8.11758 8.34457 9.32006 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.003006 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.315527 B = 9313.996987 C =10082.318367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.074 3.926 4 C 0.040 3.960 5 N -0.463 5.463 6 C 0.100 3.900 7 C -0.152 4.152 8 C 0.570 3.430 9 O -0.564 6.564 10 N -0.589 5.589 11 C 0.114 3.886 12 C -0.141 4.141 13 C 0.176 3.824 14 H 0.060 0.940 15 N -0.738 5.738 16 C -0.232 4.232 17 H 0.081 0.919 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.969 3.031 21 H -0.289 1.289 22 H -0.300 1.300 23 H -0.266 1.266 24 C -0.124 4.124 25 C 0.147 3.853 26 H 0.091 0.909 27 C -0.155 4.155 28 C -0.047 4.047 29 C -0.102 4.102 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.071 0.929 33 H 0.194 0.806 34 H 0.180 0.820 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.039 0.961 39 H 0.369 0.631 40 H 0.249 0.751 41 H 0.076 0.924 42 H 0.046 0.954 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.054 0.946 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.191 -1.092 -17.702 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.026 3.974 4 C -0.117 4.117 5 N -0.172 5.172 6 C -0.058 4.058 7 C -0.158 4.158 8 C 0.358 3.642 9 O -0.444 6.444 10 N -0.320 5.320 11 C -0.009 4.009 12 C -0.182 4.182 13 C 0.068 3.932 14 H 0.078 0.922 15 N -0.377 5.377 16 C -0.364 4.364 17 H 0.098 0.902 18 C -0.270 4.270 19 N -0.624 5.624 20 Si 0.799 3.201 21 H -0.217 1.217 22 H -0.227 1.227 23 H -0.191 1.191 24 C -0.163 4.163 25 C 0.044 3.956 26 H 0.109 0.891 27 C -0.212 4.212 28 C -0.056 4.056 29 C -0.159 4.159 30 H 0.091 0.909 31 H 0.141 0.859 32 H 0.089 0.911 33 H 0.211 0.789 34 H 0.197 0.803 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.201 0.799 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.073 0.927 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.310 -0.670 -18.036 25.710 hybrid contribution 0.807 -0.835 1.290 1.736 sum -17.503 -1.505 -16.746 24.270 Atomic orbital electron populations 1.23508 0.75531 1.06313 1.02902 1.86091 1.24019 1.24890 1.88199 1.19713 0.91672 0.87037 0.98992 1.23545 1.02109 0.86256 0.99814 1.67624 1.11593 1.26612 1.11382 1.23027 0.88447 0.98296 0.96065 1.20644 0.94018 0.94706 1.06385 1.18194 0.87027 0.77873 0.81134 1.90758 1.66069 1.47943 1.39626 1.48198 1.09032 1.49869 1.24909 1.21937 0.94841 0.99769 0.84316 1.22472 0.98720 1.00425 0.96582 1.20419 0.90649 0.97599 0.84506 0.92235 1.42675 1.64540 1.22280 1.08180 1.19631 1.26856 0.99783 0.90124 0.90154 1.25540 1.01610 0.99083 1.00813 1.69828 1.42329 1.24749 1.25448 0.85192 0.76350 0.78985 0.79578 1.21682 1.22703 1.19090 1.22010 1.00318 0.99799 0.94156 1.21086 0.79017 0.98280 0.97260 0.89059 1.22111 1.03217 0.93506 1.02399 1.19859 0.92073 0.95362 0.98312 1.20606 0.98056 0.94078 1.03141 0.90850 0.85936 0.91064 0.78935 0.80325 0.88503 0.89349 0.91484 0.94206 0.79949 0.94248 0.90583 0.93552 0.91452 0.90373 0.91460 0.90108 0.92668 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.82 113.37 1.11 1.20 16 2 O -0.32 -5.48 9.59 -92.69 -0.89 -6.36 16 3 C 0.07 1.49 6.68 22.56 0.15 1.64 16 4 C 0.04 0.71 10.21 84.83 0.87 1.57 16 5 N -0.46 -9.67 10.34 -194.39 -2.01 -11.68 16 6 C 0.10 2.13 8.96 85.03 0.76 2.89 16 7 C -0.15 -3.80 4.61 -20.01 -0.09 -3.90 16 8 C 0.57 16.30 6.23 86.79 0.54 16.84 16 9 O -0.56 -19.41 15.70 -3.89 -0.06 -19.47 16 10 N -0.59 -15.57 2.68 -799.20 -2.14 -17.71 16 11 C 0.11 2.79 5.18 86.36 0.45 3.23 16 12 C -0.14 -4.62 5.66 30.67 0.17 -4.45 16 13 C 0.18 6.47 2.53 45.02 0.11 6.58 16 14 H 0.06 2.12 6.43 -2.39 -0.02 2.11 16 15 N -0.74 -36.01 5.12 -322.83 -1.65 -37.66 16 16 C -0.23 -12.39 9.93 84.03 0.83 -11.56 16 17 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 18 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 19 N -0.97 -59.29 13.06 21.65 0.28 -59.01 16 20 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 24 C -0.12 -4.02 4.99 30.53 0.15 -3.87 16 25 C 0.15 3.96 3.20 44.83 0.14 4.11 16 26 H 0.09 2.64 7.00 -2.39 -0.02 2.62 16 27 C -0.15 -3.39 9.02 71.98 0.65 -2.74 16 28 C -0.05 -1.16 5.96 -19.31 -0.12 -1.27 16 29 C -0.10 -2.50 8.96 71.23 0.64 -1.86 16 30 H 0.07 0.35 7.67 -2.39 -0.02 0.33 16 31 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.39 7.67 -2.39 -0.02 0.37 16 33 H 0.19 1.97 6.30 -2.91 -0.02 1.95 16 34 H 0.18 3.08 7.76 -2.91 -0.02 3.06 16 35 H 0.10 1.94 7.52 -2.39 -0.02 1.93 16 36 H 0.09 2.01 5.39 -2.38 -0.01 2.00 16 37 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.37 19.89 7.80 -92.70 -0.72 19.17 16 40 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 41 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.07 1.48 5.74 -2.38 -0.01 1.46 16 44 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.05 1.52 7.29 -2.39 -0.02 1.50 16 48 H 0.09 1.86 7.48 -2.39 -0.02 1.84 16 Total: -1.00 -70.41 380.11 2.66 -67.75 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: 0.26 Total: 32.31 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 6.84 Total: 4.46 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -5.52 Total: -126.06 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.95 Total: -25.84 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -70.41 2.66 -67.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044648670.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.904 kcal (2) G-P(sol) polarization free energy of solvation -70.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds