Wall clock time and date at job start Tue Mar 31 2020 17:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35915 * 117.00575 * 2 1 4 4 C 1.38858 * 120.40250 * 359.97438 * 3 2 1 5 5 N 1.31877 * 121.00206 * 180.02562 * 4 3 2 6 6 C 1.31682 * 121.94021 * 0.02562 * 5 4 3 7 7 C 1.39533 * 120.69252 * 359.97438 * 6 5 4 8 8 C 1.47851 * 120.53060 * 179.97438 * 7 6 5 9 9 O 1.21547 * 120.00274 * 126.03651 * 8 7 6 10 10 N 1.34780 * 119.99999 * 306.02766 * 8 7 6 11 11 C 1.46932 * 120.63073 * 354.27248 * 10 8 7 12 12 C 1.53190 * 108.76598 * 233.59320 * 11 10 8 13 13 C 1.53035 * 109.31221 * 305.34517 * 12 11 10 14 14 H 1.09003 * 109.46323 * 301.37312 * 13 12 11 15 15 N 1.46507 * 109.45972 * 181.39763 * 13 12 11 16 16 C 1.36939 * 119.99593 * 84.97540 * 15 13 12 17 17 H 1.07995 * 120.00136 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99822 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00420 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99809 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47439 * 90.00057 * 20 18 16 22 22 H 1.48502 * 109.47152 * 329.99870 * 20 18 16 23 23 H 1.48506 * 109.46959 * 210.00224 * 20 18 16 24 24 C 1.53042 * 109.52879 * 61.38513 * 13 12 11 25 25 C 1.46920 * 120.62865 * 174.25016 * 10 8 7 26 26 H 1.08996 * 109.59036 * 6.62859 * 25 10 8 27 27 C 1.53003 * 109.70302 * 246.26805 * 25 10 8 28 28 C 1.38840 * 120.41282 * 180.26022 * 3 2 1 29 29 C 1.50708 * 120.87642 * 0.02562 * 28 3 2 30 30 H 1.09000 * 109.46952 * 300.00145 * 1 2 3 31 31 H 1.08997 * 109.46990 * 59.99744 * 1 2 3 32 32 H 1.08996 * 109.47495 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.49970 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.65718 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.58619 * 353.37617 * 11 10 8 36 36 H 1.09001 * 109.58224 * 113.65194 * 11 10 8 37 37 H 1.08999 * 109.48352 * 185.39914 * 12 11 10 38 38 H 1.09006 * 109.50990 * 65.30474 * 12 11 10 39 39 H 0.96999 * 119.99756 * 264.97143 * 15 13 12 40 40 H 0.96991 * 120.00345 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.49859 * 58.57985 * 24 13 12 42 42 H 1.09001 * 109.50111 * 178.67260 * 24 13 12 43 43 H 1.08995 * 109.47215 * 300.64452 * 27 25 10 44 44 H 1.09002 * 109.46771 * 60.64741 * 27 25 10 45 45 H 1.09000 * 109.47051 * 180.63870 * 27 25 10 46 46 H 1.09000 * 109.46980 * 275.14037 * 29 28 3 47 47 H 1.08999 * 109.47005 * 35.13926 * 29 28 3 48 48 H 1.08997 * 109.47157 * 155.14007 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2982 2.3809 -0.0005 5 7 1.8847 3.5621 -0.0010 6 6 3.1954 3.6890 -0.0016 7 6 4.0200 2.5635 -0.0011 8 6 5.4912 2.7102 -0.0022 9 8 6.1580 2.1551 0.8490 10 7 6.0930 3.4593 -0.9474 11 6 5.3162 4.0333 -2.0546 12 6 5.9684 3.6234 -3.3787 13 6 7.4423 4.0350 -3.3656 14 1 7.5172 5.1122 -3.2170 15 7 8.0611 3.6743 -4.6437 16 6 7.9683 4.5244 -5.7133 17 1 7.4386 5.4604 -5.6148 18 6 8.5541 4.1825 -6.9244 19 7 8.4645 4.9992 -7.9526 20 14 9.4696 2.5632 -7.0949 21 1 8.5259 1.5050 -7.5363 22 1 10.0577 2.1866 -5.7843 23 1 10.5533 2.7106 -8.0996 24 6 8.1654 3.3118 -2.2271 25 6 7.5381 3.7179 -0.8897 26 1 7.9823 3.1322 -0.0850 27 6 7.7862 5.2065 -0.6380 28 6 3.4321 1.2935 -0.0054 29 6 4.2810 0.0482 -0.0120 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 0.2198 2.3226 -0.0005 34 1 3.6368 4.6747 -0.0016 35 1 4.2943 3.6558 -2.0183 36 1 5.3074 5.1200 -1.9699 37 1 5.4590 4.1206 -4.2041 38 1 5.8934 2.5429 -3.5023 39 1 8.5365 2.8335 -4.7322 40 1 8.8742 4.7605 -8.7987 41 1 8.0696 2.2343 -2.3616 42 1 9.2200 3.5872 -2.2328 43 1 7.3369 5.7906 -1.4411 44 1 7.3392 5.4934 0.3139 45 1 8.8592 5.3959 -0.6072 46 1 4.4137 -0.3064 1.0101 47 1 3.7889 -0.7238 -0.6034 48 1 5.2543 0.2743 -0.4474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044648672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:32 Heat of formation + Delta-G solvation = -19.735448 kcal Electronic energy + Delta-G solvation = -29610.144497 eV Core-core repulsion = 25665.979542 eV Total energy + Delta-G solvation = -3944.164954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39047 -40.11915 -38.41723 -37.64939 -34.76995 -34.08387 -32.78693 -31.89537 -30.75860 -29.81221 -28.18487 -27.93877 -27.47869 -24.78034 -23.85223 -23.10111 -22.57121 -21.56431 -20.62280 -18.93018 -18.23469 -17.78403 -17.41051 -16.76453 -16.52791 -16.28083 -15.89611 -15.20355 -14.99673 -14.47486 -14.26373 -14.10220 -13.94998 -13.76544 -13.48905 -13.29756 -13.08910 -13.05820 -12.88808 -12.76810 -12.59114 -12.36497 -12.04867 -12.01419 -11.88258 -11.80154 -11.47337 -11.06172 -10.99167 -10.88280 -10.57553 -10.38582 -10.24822 -9.78731 -9.72630 -9.62186 -9.51370 -8.96871 -8.76332 -8.63470 -7.31937 -5.80917 -3.16858 0.47071 0.90860 2.42934 2.71041 2.99898 3.34984 3.38382 3.41053 3.43326 4.05081 4.17822 4.31516 4.43343 4.55815 4.56789 4.71418 4.80001 4.93017 4.96764 5.03733 5.07735 5.09890 5.19690 5.25642 5.36236 5.45005 5.48536 5.49938 5.52207 5.64887 5.69337 5.76200 5.84864 5.89429 5.95184 6.02084 6.09183 6.15970 6.21602 6.32508 6.35726 6.50727 6.76625 6.77734 6.90493 7.33900 7.54469 7.94518 8.02399 8.38173 9.16312 9.89180 10.08767 11.37285 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.003136 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.952613 B = 8926.860900 C = 9571.334191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.071 3.929 4 C 0.034 3.966 5 N -0.452 5.452 6 C 0.101 3.899 7 C -0.138 4.138 8 C 0.568 3.432 9 O -0.533 6.533 10 N -0.592 5.592 11 C 0.103 3.897 12 C -0.150 4.150 13 C 0.183 3.817 14 H 0.061 0.939 15 N -0.748 5.748 16 C -0.244 4.244 17 H 0.091 0.909 18 C 0.006 3.994 19 N -0.933 5.933 20 Si 0.883 3.117 21 H -0.285 1.285 22 H -0.277 1.277 23 H -0.291 1.291 24 C -0.137 4.137 25 C 0.142 3.858 26 H 0.098 0.902 27 C -0.162 4.162 28 C -0.026 4.026 29 C -0.108 4.108 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.361 0.639 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.272 -6.889 18.978 24.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.024 3.976 4 C -0.123 4.123 5 N -0.161 5.161 6 C -0.058 4.058 7 C -0.143 4.143 8 C 0.354 3.646 9 O -0.411 6.411 10 N -0.324 5.324 11 C -0.020 4.020 12 C -0.191 4.191 13 C 0.074 3.926 14 H 0.079 0.921 15 N -0.390 5.390 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.581 5.581 20 Si 0.714 3.286 21 H -0.212 1.212 22 H -0.203 1.203 23 H -0.218 1.218 24 C -0.176 4.176 25 C 0.039 3.961 26 H 0.116 0.884 27 C -0.220 4.220 28 C -0.035 4.035 29 C -0.164 4.164 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.179 0.821 34 H 0.181 0.819 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.193 0.807 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.379 -6.444 19.237 24.867 hybrid contribution 0.733 -1.710 -0.449 1.914 sum -13.646 -8.153 18.788 24.611 Atomic orbital electron populations 1.23155 0.77845 1.04549 1.01650 1.86095 1.21639 1.25531 1.88514 1.19713 0.92181 0.86104 0.99648 1.23041 1.00688 0.87053 1.01551 1.67548 1.11730 1.25925 1.10913 1.22835 0.88426 0.98131 0.96445 1.20737 0.95015 0.93893 1.04704 1.17955 0.86338 0.78677 0.81591 1.90781 1.65191 1.46862 1.38254 1.48200 1.09155 1.50204 1.24844 1.21981 0.94942 0.98604 0.86479 1.22635 0.99692 1.01722 0.95073 1.20177 0.89757 0.97657 0.85028 0.92117 1.42798 1.65129 1.22436 1.08613 1.19053 1.29557 1.00562 0.88212 0.89160 1.24667 1.00644 0.97861 0.95861 1.69693 1.49548 1.36795 1.02045 0.86570 0.79964 0.84844 0.77251 1.21155 1.20302 1.21756 1.22261 1.00475 1.00988 0.93889 1.21220 0.79020 0.96907 0.98917 0.88396 1.22161 1.02569 0.95375 1.01905 1.19686 0.90930 0.95480 0.97445 1.20700 0.98752 0.93533 1.03465 0.92344 0.92217 0.87745 0.82119 0.81862 0.90466 0.90838 0.90039 0.92312 0.80666 0.93034 0.91908 0.90332 0.91379 0.92684 0.91090 0.89930 0.90546 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.83 9.76 -19.47 -0.19 -3.02 16 3 C 0.07 0.76 6.68 -39.13 -0.26 0.50 16 4 C 0.03 0.34 10.21 -17.30 -0.18 0.16 16 5 N -0.45 -5.21 10.34 -12.79 -0.13 -5.34 16 6 C 0.10 1.15 8.96 -17.13 -0.15 0.99 16 7 C -0.14 -1.73 4.61 -104.84 -0.48 -2.22 16 8 C 0.57 7.93 6.16 -12.32 -0.08 7.86 16 9 O -0.53 -8.80 15.50 5.32 0.08 -8.72 16 10 N -0.59 -7.75 2.68 -166.32 -0.45 -8.19 16 11 C 0.10 1.30 5.18 -3.71 -0.02 1.28 16 12 C -0.15 -2.39 5.66 -26.61 -0.15 -2.54 16 13 C 0.18 3.24 2.53 -67.89 -0.17 3.06 16 14 H 0.06 1.10 6.45 -51.93 -0.33 0.76 16 15 N -0.75 -16.86 4.92 -53.38 -0.26 -17.12 16 16 C -0.24 -6.60 10.41 -15.06 -0.16 -6.76 16 17 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 18 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -28.76 13.97 55.49 0.78 -27.99 16 20 Si 0.88 21.79 27.73 -169.99 -4.71 17.07 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 C -0.14 -2.06 5.02 -26.61 -0.13 -2.20 16 25 C 0.14 1.87 3.21 -67.60 -0.22 1.66 16 26 H 0.10 1.35 7.00 -51.93 -0.36 0.98 16 27 C -0.16 -1.87 9.03 37.16 0.34 -1.53 16 28 C -0.03 -0.32 5.96 -103.76 -0.62 -0.94 16 29 C -0.11 -1.24 9.11 36.01 0.33 -0.91 16 30 H 0.06 0.23 7.67 -51.93 -0.40 -0.17 16 31 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.16 1.10 6.30 -52.49 -0.33 0.77 16 34 H 0.16 1.58 7.76 -52.49 -0.41 1.18 16 35 H 0.08 0.92 5.39 -51.93 -0.28 0.64 16 36 H 0.07 0.83 7.50 -51.93 -0.39 0.44 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.36 8.15 5.66 -40.82 -0.23 7.91 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 0.81 5.75 -51.93 -0.30 0.51 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.08 0.79 7.78 -51.93 -0.40 0.39 16 48 H 0.07 0.95 6.71 -51.93 -0.35 0.60 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -33.10 376.84 -7.43 -40.52 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.16 Total: 7.53 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.06 Total: -0.42 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.07 Total: -58.64 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.11 Total: -11.74 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.10 -7.43 -40.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044648672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.789 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds