Wall clock time and date at job start Tue Mar 31 2020 17:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35915 * 117.00575 * 2 1 4 4 C 1.38858 * 120.40250 * 359.97438 * 3 2 1 5 5 N 1.31877 * 121.00206 * 180.02562 * 4 3 2 6 6 C 1.31682 * 121.94021 * 0.02562 * 5 4 3 7 7 C 1.39533 * 120.69252 * 359.97438 * 6 5 4 8 8 C 1.47851 * 120.53060 * 179.97438 * 7 6 5 9 9 O 1.21547 * 120.00274 * 126.03651 * 8 7 6 10 10 N 1.34780 * 119.99999 * 306.02766 * 8 7 6 11 11 C 1.46932 * 120.63073 * 354.27248 * 10 8 7 12 12 C 1.53190 * 108.76598 * 233.59320 * 11 10 8 13 13 C 1.53035 * 109.31221 * 305.34517 * 12 11 10 14 14 H 1.09003 * 109.46323 * 301.37312 * 13 12 11 15 15 N 1.46507 * 109.45972 * 181.39763 * 13 12 11 16 16 C 1.36939 * 119.99593 * 84.97540 * 15 13 12 17 17 H 1.07995 * 120.00136 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99822 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00420 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99809 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47439 * 90.00057 * 20 18 16 22 22 H 1.48502 * 109.47152 * 329.99870 * 20 18 16 23 23 H 1.48506 * 109.46959 * 210.00224 * 20 18 16 24 24 C 1.53042 * 109.52879 * 61.38513 * 13 12 11 25 25 C 1.46920 * 120.62865 * 174.25016 * 10 8 7 26 26 H 1.08996 * 109.59036 * 6.62859 * 25 10 8 27 27 C 1.53003 * 109.70302 * 246.26805 * 25 10 8 28 28 C 1.38840 * 120.41282 * 180.26022 * 3 2 1 29 29 C 1.50708 * 120.87642 * 0.02562 * 28 3 2 30 30 H 1.09000 * 109.46952 * 300.00145 * 1 2 3 31 31 H 1.08997 * 109.46990 * 59.99744 * 1 2 3 32 32 H 1.08996 * 109.47495 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.49970 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.65718 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.58619 * 353.37617 * 11 10 8 36 36 H 1.09001 * 109.58224 * 113.65194 * 11 10 8 37 37 H 1.08999 * 109.48352 * 185.39914 * 12 11 10 38 38 H 1.09006 * 109.50990 * 65.30474 * 12 11 10 39 39 H 0.96999 * 119.99756 * 264.97143 * 15 13 12 40 40 H 0.96991 * 120.00345 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.49859 * 58.57985 * 24 13 12 42 42 H 1.09001 * 109.50111 * 178.67260 * 24 13 12 43 43 H 1.08995 * 109.47215 * 300.64452 * 27 25 10 44 44 H 1.09002 * 109.46771 * 60.64741 * 27 25 10 45 45 H 1.09000 * 109.47051 * 180.63870 * 27 25 10 46 46 H 1.09000 * 109.46980 * 275.14037 * 29 28 3 47 47 H 1.08999 * 109.47005 * 35.13926 * 29 28 3 48 48 H 1.08997 * 109.47157 * 155.14007 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2982 2.3809 -0.0005 5 7 1.8847 3.5621 -0.0010 6 6 3.1954 3.6890 -0.0016 7 6 4.0200 2.5635 -0.0011 8 6 5.4912 2.7102 -0.0022 9 8 6.1580 2.1551 0.8490 10 7 6.0930 3.4593 -0.9474 11 6 5.3162 4.0333 -2.0546 12 6 5.9684 3.6234 -3.3787 13 6 7.4423 4.0350 -3.3656 14 1 7.5172 5.1122 -3.2170 15 7 8.0611 3.6743 -4.6437 16 6 7.9683 4.5244 -5.7133 17 1 7.4386 5.4604 -5.6148 18 6 8.5541 4.1825 -6.9244 19 7 8.4645 4.9992 -7.9526 20 14 9.4696 2.5632 -7.0949 21 1 8.5259 1.5050 -7.5363 22 1 10.0577 2.1866 -5.7843 23 1 10.5533 2.7106 -8.0996 24 6 8.1654 3.3118 -2.2271 25 6 7.5381 3.7179 -0.8897 26 1 7.9823 3.1322 -0.0850 27 6 7.7862 5.2065 -0.6380 28 6 3.4321 1.2935 -0.0054 29 6 4.2810 0.0482 -0.0120 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 0.2198 2.3226 -0.0005 34 1 3.6368 4.6747 -0.0016 35 1 4.2943 3.6558 -2.0183 36 1 5.3074 5.1200 -1.9699 37 1 5.4590 4.1206 -4.2041 38 1 5.8934 2.5429 -3.5023 39 1 8.5365 2.8335 -4.7322 40 1 8.8742 4.7605 -8.7987 41 1 8.0696 2.2343 -2.3616 42 1 9.2200 3.5872 -2.2328 43 1 7.3369 5.7906 -1.4411 44 1 7.3392 5.4934 0.3139 45 1 8.8592 5.3959 -0.6072 46 1 4.4137 -0.3064 1.0101 47 1 3.7889 -0.7238 -0.6034 48 1 5.2543 0.2743 -0.4474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044648672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:31 Heat of formation + Delta-G solvation = -41.820613 kcal Electronic energy + Delta-G solvation = -29611.102181 eV Core-core repulsion = 25665.979542 eV Total energy + Delta-G solvation = -3945.122639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.28475 -41.10567 -39.29825 -38.76242 -36.39707 -34.96529 -34.09234 -33.52752 -31.82638 -31.27166 -29.01156 -28.71517 -28.44043 -26.03417 -25.11384 -24.39401 -23.55551 -22.83463 -21.81987 -20.23695 -19.49973 -18.85310 -18.59715 -17.74815 -17.37561 -16.95543 -16.91606 -16.77878 -16.13336 -15.85071 -15.29734 -15.20540 -15.07551 -14.94554 -14.75860 -14.54539 -14.28909 -14.09899 -13.94856 -13.88617 -13.75326 -13.44723 -13.05740 -12.98696 -12.96744 -12.77697 -12.72501 -12.45513 -12.36749 -12.14723 -12.02087 -11.98876 -11.78393 -11.40667 -11.13008 -10.93765 -10.61199 -10.44104 -9.76621 -9.52963 -9.29451 -8.00377 -5.33113 -0.38763 0.07281 1.38580 1.40109 1.42082 1.47630 1.77941 2.22539 2.49337 2.56282 3.19885 3.31324 3.39625 3.46022 3.51804 3.58554 3.77514 3.91136 3.99158 4.05720 4.14475 4.22119 4.28964 4.35977 4.40429 4.43919 4.51796 4.52948 4.57140 4.59932 4.64601 4.74335 4.77208 4.77356 4.97918 5.00556 5.02862 5.04217 5.05350 5.22820 5.30367 5.31783 5.49250 5.58460 5.80376 6.12952 6.23778 6.25931 6.72196 6.94920 7.09794 7.86555 8.04403 9.21020 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.003136 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.952613 B = 8926.860900 C = 9571.334191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.073 3.927 4 C 0.039 3.961 5 N -0.464 5.464 6 C 0.099 3.901 7 C -0.152 4.152 8 C 0.572 3.428 9 O -0.562 6.562 10 N -0.589 5.589 11 C 0.114 3.886 12 C -0.142 4.142 13 C 0.178 3.822 14 H 0.059 0.941 15 N -0.753 5.753 16 C -0.221 4.221 17 H 0.063 0.937 18 C -0.063 4.063 19 N -0.984 5.984 20 Si 0.948 3.052 21 H -0.283 1.283 22 H -0.253 1.253 23 H -0.298 1.298 24 C -0.128 4.128 25 C 0.146 3.854 26 H 0.096 0.904 27 C -0.157 4.157 28 C -0.046 4.046 29 C -0.102 4.102 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.123 0.877 33 H 0.193 0.807 34 H 0.178 0.822 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.362 0.638 40 H 0.256 0.744 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.605 -7.795 20.748 27.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.025 3.975 4 C -0.118 4.118 5 N -0.174 5.174 6 C -0.060 4.060 7 C -0.157 4.157 8 C 0.359 3.641 9 O -0.442 6.442 10 N -0.321 5.321 11 C -0.009 4.009 12 C -0.183 4.183 13 C 0.070 3.930 14 H 0.077 0.923 15 N -0.395 5.395 16 C -0.352 4.352 17 H 0.081 0.919 18 C -0.255 4.255 19 N -0.635 5.635 20 Si 0.777 3.223 21 H -0.210 1.210 22 H -0.178 1.178 23 H -0.225 1.225 24 C -0.167 4.167 25 C 0.043 3.957 26 H 0.114 0.886 27 C -0.215 4.215 28 C -0.055 4.055 29 C -0.158 4.158 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.141 0.859 33 H 0.209 0.791 34 H 0.195 0.805 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.195 0.805 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.103 0.897 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.735 -7.360 21.068 27.306 hybrid contribution 0.993 -1.434 -0.926 1.975 sum -14.742 -8.794 20.142 26.464 Atomic orbital electron populations 1.23504 0.75571 1.06305 1.02871 1.86091 1.23973 1.24863 1.88165 1.19727 0.91741 0.86991 0.99009 1.23538 1.02100 0.86305 0.99871 1.67620 1.11659 1.26676 1.11394 1.23022 0.88473 0.98340 0.96124 1.20647 0.94085 0.94624 1.06372 1.18152 0.86941 0.77882 0.81083 1.90760 1.66039 1.47963 1.39434 1.48200 1.09150 1.49978 1.24728 1.21906 0.94961 0.99683 0.84347 1.22441 0.98375 1.00929 0.96545 1.20411 0.90763 0.97977 0.83816 0.92302 1.42854 1.65628 1.21809 1.09182 1.19026 1.27154 0.99766 0.89274 0.91903 1.25417 1.02694 1.01591 0.95767 1.69863 1.51744 1.39192 1.02674 0.85503 0.78402 0.80500 0.77922 1.20975 1.17771 1.22547 1.22147 1.00558 1.00224 0.93736 1.21182 0.78964 0.98082 0.97453 0.88626 1.22121 1.03308 0.93735 1.02293 1.19858 0.91998 0.95407 0.98222 1.20621 0.97919 0.93850 1.03441 0.90909 0.91105 0.85911 0.79053 0.80501 0.89280 0.88930 0.91800 0.93141 0.80498 0.93498 0.92453 0.89924 0.91763 0.91581 0.90200 0.89949 0.89671 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.82 113.37 1.11 1.19 16 2 O -0.32 -5.21 9.76 -92.59 -0.90 -6.12 16 3 C 0.07 1.43 6.68 22.56 0.15 1.58 16 4 C 0.04 0.68 10.21 84.83 0.87 1.54 16 5 N -0.46 -9.64 10.34 -194.38 -2.01 -11.65 16 6 C 0.10 2.07 8.96 85.03 0.76 2.83 16 7 C -0.15 -3.64 4.61 -20.01 -0.09 -3.73 16 8 C 0.57 15.43 6.16 86.79 0.53 15.96 16 9 O -0.56 -18.29 15.50 -3.86 -0.06 -18.35 16 10 N -0.59 -14.61 2.68 -798.40 -2.14 -16.75 16 11 C 0.11 2.69 5.18 86.36 0.45 3.14 16 12 C -0.14 -4.43 5.66 30.67 0.17 -4.25 16 13 C 0.18 6.14 2.53 45.02 0.11 6.25 16 14 H 0.06 2.08 6.45 -2.39 -0.02 2.06 16 15 N -0.75 -33.47 4.92 -322.80 -1.59 -35.06 16 16 C -0.22 -12.09 10.41 84.03 0.87 -11.21 16 17 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 18 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 19 N -0.98 -62.19 13.97 21.65 0.30 -61.88 16 20 Si 0.95 45.17 27.73 68.60 1.90 47.07 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.25 -10.90 6.52 99.48 0.65 -10.25 16 23 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 24 C -0.13 -3.68 5.02 30.67 0.15 -3.52 16 25 C 0.15 3.63 3.21 44.98 0.14 3.77 16 26 H 0.10 2.50 7.00 -2.39 -0.02 2.49 16 27 C -0.16 -3.29 9.03 71.98 0.65 -2.64 16 28 C -0.05 -1.07 5.96 -19.30 -0.12 -1.18 16 29 C -0.10 -2.30 9.11 71.24 0.65 -1.65 16 30 H 0.07 0.32 7.67 -2.39 -0.02 0.31 16 31 H 0.07 0.36 7.67 -2.39 -0.02 0.34 16 32 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.19 1.94 6.30 -2.91 -0.02 1.92 16 34 H 0.18 3.05 7.76 -2.91 -0.02 3.03 16 35 H 0.09 1.96 5.39 -2.39 -0.01 1.95 16 36 H 0.09 1.89 7.50 -2.39 -0.02 1.87 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.36 15.85 5.66 -92.71 -0.52 15.32 16 40 H 0.26 15.53 8.31 -92.72 -0.77 14.76 16 41 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.06 1.40 5.75 -2.39 -0.01 1.39 16 44 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.08 1.70 7.78 -2.39 -0.02 1.69 16 48 H 0.06 1.46 6.71 -2.39 -0.02 1.44 16 Total: -1.00 -72.24 376.84 2.79 -69.45 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.40 Total: 28.41 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 6.89 Total: 4.88 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -5.44 Total: -125.35 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.96 Total: -24.47 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.07 kcal Total: -72.24 2.79 -69.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044648672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.630 kcal (2) G-P(sol) polarization free energy of solvation -72.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds