Wall clock time and date at job start Tue Mar 31 2020 18:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40198 * 120.36900 * 2 1 4 4 C 1.35344 * 119.94789 * 179.97438 * 3 2 1 5 5 N 1.35758 * 120.70521 * 359.97438 * 4 3 2 6 6 C 1.46501 * 119.62680 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47546 * 89.99665 * 6 5 4 8 8 O 1.21288 * 119.99731 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00528 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.62527 * 354.23027 * 9 7 6 11 11 C 1.53190 * 108.77931 * 126.41504 * 10 9 7 12 12 C 1.53035 * 109.31591 * 54.62680 * 11 10 9 13 13 H 1.08992 * 109.46455 * 178.63510 * 12 11 10 14 14 N 1.46508 * 109.45790 * 58.65959 * 12 11 10 15 15 C 1.36932 * 119.99870 * 84.97332 * 14 12 11 16 16 H 1.08001 * 120.00087 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00134 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00187 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99661 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.46999 * 89.99672 * 19 17 15 21 21 H 1.48498 * 109.47034 * 329.99480 * 19 17 15 22 22 H 1.48504 * 109.46673 * 209.99705 * 19 17 15 23 23 C 1.53045 * 109.52845 * 298.65021 * 12 11 10 24 24 C 1.46920 * 120.63471 * 174.24791 * 9 7 6 25 25 H 1.09001 * 109.58803 * 113.80130 * 24 9 7 26 26 C 1.53001 * 109.58582 * 353.51548 * 24 9 7 27 27 C 1.34659 * 120.75076 * 0.29342 * 5 4 3 28 28 O 1.22057 * 119.98883 * 179.70644 * 27 5 4 29 29 C 1.36403 * 120.36551 * 179.97438 * 2 1 3 30 30 H 1.08991 * 109.47261 * 90.00130 * 1 2 3 31 31 H 1.09002 * 109.47365 * 210.00792 * 1 2 3 32 32 H 1.09004 * 109.47210 * 330.00304 * 1 2 3 33 33 H 1.08002 * 120.02281 * 359.95011 * 3 2 1 34 34 H 1.08005 * 119.64848 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.47029 * 329.99162 * 6 5 4 36 36 H 1.08999 * 109.46894 * 209.99890 * 6 5 4 37 37 H 1.09000 * 109.59278 * 6.61734 * 10 9 7 38 38 H 1.09008 * 109.69892 * 246.26641 * 10 9 7 39 39 H 1.09006 * 109.49364 * 294.67985 * 11 10 9 40 40 H 1.08992 * 109.53025 * 174.60236 * 11 10 9 41 41 H 0.96995 * 119.99779 * 264.97675 * 14 12 11 42 42 H 0.96999 * 119.99803 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.49561 * 181.30793 * 23 12 11 44 44 H 1.08998 * 109.49538 * 301.40045 * 23 12 11 45 45 H 1.09007 * 109.46487 * 65.75602 * 26 24 9 46 46 H 1.09004 * 109.47176 * 185.75094 * 26 24 9 47 47 H 1.08993 * 109.47548 * 305.75399 * 26 24 9 48 48 H 1.07992 * 120.34375 * 0.04320 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2538 0.0273 0.0016 6 6 5.7187 0.0442 0.0027 7 6 6.2200 0.0506 1.4238 8 8 5.4312 0.0416 2.3451 9 7 7.5448 0.0654 1.6711 10 6 8.5127 -0.0517 0.5720 11 6 9.4940 1.1219 0.6519 12 6 10.1263 1.1592 2.0450 13 1 10.8430 1.9787 2.0967 14 7 10.8147 -0.1082 2.3026 15 6 12.1000 -0.2900 1.8669 16 1 12.6066 0.5010 1.3338 17 6 12.7525 -1.4906 2.1114 18 7 13.9878 -1.6656 1.6923 19 14 11.8766 -2.8585 3.0342 20 1 11.1623 -3.7297 2.0667 21 1 10.8995 -2.2681 3.9839 22 1 12.8719 -3.6649 3.7854 23 6 9.0346 1.3694 3.0968 24 6 8.0485 0.1986 3.0448 25 1 8.5561 -0.7201 3.3386 26 6 6.8801 0.4657 3.9959 27 6 3.6017 -1.1508 -0.0038 28 8 4.2312 -2.1965 -0.0082 29 6 2.1965 -1.1769 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5140 32 1 -0.3634 0.8900 0.5138 33 1 1.6822 2.1486 -0.0008 34 1 4.1104 2.1344 0.0001 35 1 6.0722 0.9380 -0.5114 36 1 6.0926 -0.8418 -0.5104 37 1 7.9870 -0.0243 -0.3825 38 1 9.0585 -0.9910 0.6616 39 1 8.9608 2.0550 0.4693 40 1 10.2743 0.9962 -0.0986 41 1 10.3599 -0.8184 2.7816 42 1 14.4438 -2.5044 1.8635 43 1 9.4881 1.4191 4.0868 44 1 8.5058 2.3001 2.8913 45 1 6.2282 -0.4075 4.0246 46 1 7.2642 0.6654 4.9963 47 1 6.3156 1.3293 3.6444 48 1 1.6682 -2.1188 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044761165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:05 Heat of formation + Delta-G solvation = -2.145754 kcal Electronic energy + Delta-G solvation = -29776.932614 eV Core-core repulsion = 25833.530406 eV Total energy + Delta-G solvation = -3943.402208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70515 -40.27398 -37.70490 -37.16214 -35.51390 -34.42266 -32.93262 -32.01316 -30.60575 -29.81697 -29.49475 -27.51407 -26.78651 -24.34622 -23.90821 -23.17489 -22.42165 -21.57189 -20.23932 -18.58328 -17.80437 -17.74014 -17.62311 -17.03959 -16.21633 -15.97716 -15.39181 -15.31336 -14.67744 -14.43948 -14.33696 -14.32623 -13.86744 -13.78022 -13.62270 -13.53320 -13.29585 -12.98592 -12.70111 -12.56928 -12.41256 -12.30383 -12.05912 -11.92264 -11.86603 -11.73851 -11.39862 -11.10088 -10.96389 -10.85203 -10.56957 -10.31260 -10.19121 -10.09469 -10.02803 -9.63453 -9.06405 -9.00265 -8.40687 -8.13316 -7.35129 -5.83316 -3.19547 0.62508 1.70699 2.28627 2.51957 3.02466 3.33550 3.36762 3.43164 3.51886 4.25102 4.34330 4.36561 4.50806 4.53493 4.72641 4.87995 4.97776 4.98279 5.05472 5.13189 5.14570 5.20155 5.25745 5.29309 5.41137 5.49878 5.50438 5.52359 5.65355 5.71852 5.79502 5.83057 5.90796 5.95391 6.07490 6.14399 6.22101 6.29138 6.32071 6.39545 6.52627 6.55694 6.62843 6.85326 6.89538 7.46010 7.91852 7.91995 8.13522 8.35655 9.13340 9.86203 10.05198 11.34794 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002969 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.135558 B = 9429.189528 C = 9739.129700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.014 3.986 3 C -0.233 4.233 4 C 0.148 3.852 5 N -0.480 5.480 6 C 0.067 3.933 7 C 0.503 3.497 8 O -0.529 6.529 9 N -0.595 5.595 10 C 0.109 3.891 11 C -0.149 4.149 12 C 0.179 3.821 13 H 0.061 0.939 14 N -0.747 5.747 15 C -0.245 4.245 16 H 0.091 0.909 17 C 0.008 3.992 18 N -0.932 5.932 19 Si 0.878 3.122 20 H -0.283 1.283 21 H -0.278 1.278 22 H -0.290 1.290 23 C -0.135 4.135 24 C 0.145 3.855 25 H 0.073 0.927 26 C -0.135 4.135 27 C 0.521 3.479 28 O -0.550 6.550 29 C -0.248 4.248 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.160 0.840 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.360 0.640 42 H 0.260 0.740 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.060 0.940 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.818 10.239 -4.962 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.256 4.256 4 C 0.020 3.980 5 N -0.190 5.190 6 C -0.058 4.058 7 C 0.289 3.711 8 O -0.407 6.407 9 N -0.329 5.329 10 C -0.013 4.013 11 C -0.190 4.190 12 C 0.069 3.931 13 H 0.079 0.921 14 N -0.390 5.390 15 C -0.375 4.375 16 H 0.109 0.891 17 C -0.188 4.188 18 N -0.579 5.579 19 Si 0.708 3.292 20 H -0.210 1.210 21 H -0.204 1.204 22 H -0.216 1.216 23 C -0.174 4.174 24 C 0.042 3.958 25 H 0.090 0.910 26 C -0.192 4.192 27 C 0.323 3.677 28 O -0.432 6.432 29 C -0.270 4.270 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -24.527 9.559 -4.561 26.715 hybrid contribution -0.271 -1.026 0.581 1.210 sum -24.798 8.532 -3.980 26.525 Atomic orbital electron populations 1.20917 0.90445 1.03521 1.02985 1.20186 0.96691 0.92681 0.89406 1.20485 0.92323 0.98847 1.13945 1.21873 0.93577 0.89524 0.92976 1.45078 1.07325 1.07234 1.59376 1.21940 0.79355 1.07162 0.97337 1.20511 0.82730 0.77166 0.90711 1.90773 1.55668 1.49889 1.44329 1.48164 1.04761 1.71271 1.08716 1.21821 0.90364 1.01456 0.87686 1.22498 0.98421 0.96124 1.01911 1.20157 0.91876 0.90190 0.90838 0.92088 1.42884 1.14202 1.13259 1.68695 1.19046 0.88067 1.00291 1.30079 0.89105 1.24647 0.95947 0.97605 1.00595 1.69688 1.11271 1.25810 1.51136 0.86667 0.79027 0.83268 0.80223 1.20983 1.20418 1.21631 1.22282 0.96712 0.97361 1.01078 1.21273 0.95043 0.99059 0.80419 0.90958 1.22182 0.96565 1.03752 0.96719 1.17090 0.89336 0.82482 0.78757 1.90975 1.69125 1.30263 1.52822 1.21910 0.92270 0.99522 1.13259 0.90175 0.90869 0.90810 0.83829 0.82283 0.86186 0.85354 0.90972 0.89762 0.92854 0.90036 0.80583 0.92999 0.90505 0.91591 0.90655 0.93747 0.92052 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.03 36.01 0.36 -0.31 16 2 C 0.01 0.12 5.89 -104.55 -0.62 -0.49 16 3 C -0.23 -1.75 9.71 -39.88 -0.39 -2.14 16 4 C 0.15 1.23 10.28 -16.85 -0.17 1.06 16 5 N -0.48 -5.62 2.07 -121.06 -0.25 -5.87 16 6 C 0.07 0.75 4.17 -5.19 -0.02 0.73 16 7 C 0.50 7.21 7.57 -10.99 -0.08 7.13 16 8 O -0.53 -8.96 12.00 5.55 0.07 -8.89 16 9 N -0.60 -8.64 2.97 -165.24 -0.49 -9.13 16 10 C 0.11 1.52 6.09 -3.71 -0.02 1.50 16 11 C -0.15 -2.13 5.78 -26.61 -0.15 -2.29 16 12 C 0.18 3.06 3.10 -67.88 -0.21 2.85 16 13 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 14 N -0.75 -16.22 4.11 -53.38 -0.22 -16.44 16 15 C -0.25 -6.48 10.41 -15.06 -0.16 -6.63 16 16 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 17 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 18 N -0.93 -28.49 13.97 55.49 0.78 -27.71 16 19 Si 0.88 21.85 27.74 -169.99 -4.71 17.14 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 C -0.14 -1.99 5.08 -26.62 -0.14 -2.12 16 24 C 0.14 2.25 3.19 -67.62 -0.22 2.03 16 25 H 0.07 1.28 6.64 -51.93 -0.34 0.94 16 26 C -0.14 -2.01 7.62 37.16 0.28 -1.72 16 27 C 0.52 7.64 7.40 -15.44 -0.11 7.52 16 28 O -0.55 -10.29 16.63 4.87 0.08 -10.21 16 29 C -0.25 -2.91 9.65 -39.38 -0.38 -3.29 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 33 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.16 0.79 8.04 -52.48 -0.42 0.37 16 35 H 0.12 0.84 7.80 -51.93 -0.40 0.43 16 36 H 0.13 1.52 6.94 -51.93 -0.36 1.16 16 37 H 0.07 0.77 5.93 -51.93 -0.31 0.46 16 38 H 0.08 1.42 7.74 -51.92 -0.40 1.02 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.36 7.97 3.92 -40.82 -0.16 7.81 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.27 6.54 -51.92 -0.34 0.93 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.91 6.96 -51.93 -0.36 0.55 16 48 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -35.47 377.80 -8.52 -43.99 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -7.34 Total: 7.48 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -2.12 Total: 3.94 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.19 Total: -59.14 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.15 Total: -19.10 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.47 -8.52 -43.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044761165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.842 kcal (2) G-P(sol) polarization free energy of solvation -35.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds