Wall clock time and date at job start Tue Mar 31 2020 18:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40198 * 120.36900 * 2 1 4 4 C 1.35344 * 119.94789 * 179.97438 * 3 2 1 5 5 N 1.35758 * 120.70521 * 359.97438 * 4 3 2 6 6 C 1.46501 * 119.62680 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47546 * 89.99665 * 6 5 4 8 8 O 1.21288 * 119.99731 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00528 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.62527 * 354.23027 * 9 7 6 11 11 C 1.53190 * 108.77931 * 126.41504 * 10 9 7 12 12 C 1.53035 * 109.31591 * 54.62680 * 11 10 9 13 13 H 1.08992 * 109.46455 * 178.63510 * 12 11 10 14 14 N 1.46508 * 109.45790 * 58.65959 * 12 11 10 15 15 C 1.36932 * 119.99870 * 84.97332 * 14 12 11 16 16 H 1.08001 * 120.00087 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00134 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00187 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99661 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.46999 * 89.99672 * 19 17 15 21 21 H 1.48498 * 109.47034 * 329.99480 * 19 17 15 22 22 H 1.48504 * 109.46673 * 209.99705 * 19 17 15 23 23 C 1.53045 * 109.52845 * 298.65021 * 12 11 10 24 24 C 1.46920 * 120.63471 * 174.24791 * 9 7 6 25 25 H 1.09001 * 109.58803 * 113.80130 * 24 9 7 26 26 C 1.53001 * 109.58582 * 353.51548 * 24 9 7 27 27 C 1.34659 * 120.75076 * 0.29342 * 5 4 3 28 28 O 1.22057 * 119.98883 * 179.70644 * 27 5 4 29 29 C 1.36403 * 120.36551 * 179.97438 * 2 1 3 30 30 H 1.08991 * 109.47261 * 90.00130 * 1 2 3 31 31 H 1.09002 * 109.47365 * 210.00792 * 1 2 3 32 32 H 1.09004 * 109.47210 * 330.00304 * 1 2 3 33 33 H 1.08002 * 120.02281 * 359.95011 * 3 2 1 34 34 H 1.08005 * 119.64848 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.47029 * 329.99162 * 6 5 4 36 36 H 1.08999 * 109.46894 * 209.99890 * 6 5 4 37 37 H 1.09000 * 109.59278 * 6.61734 * 10 9 7 38 38 H 1.09008 * 109.69892 * 246.26641 * 10 9 7 39 39 H 1.09006 * 109.49364 * 294.67985 * 11 10 9 40 40 H 1.08992 * 109.53025 * 174.60236 * 11 10 9 41 41 H 0.96995 * 119.99779 * 264.97675 * 14 12 11 42 42 H 0.96999 * 119.99803 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.49561 * 181.30793 * 23 12 11 44 44 H 1.08998 * 109.49538 * 301.40045 * 23 12 11 45 45 H 1.09007 * 109.46487 * 65.75602 * 26 24 9 46 46 H 1.09004 * 109.47176 * 185.75094 * 26 24 9 47 47 H 1.08993 * 109.47548 * 305.75399 * 26 24 9 48 48 H 1.07992 * 120.34375 * 0.04320 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2538 0.0273 0.0016 6 6 5.7187 0.0442 0.0027 7 6 6.2200 0.0506 1.4238 8 8 5.4312 0.0416 2.3451 9 7 7.5448 0.0654 1.6711 10 6 8.5127 -0.0517 0.5720 11 6 9.4940 1.1219 0.6519 12 6 10.1263 1.1592 2.0450 13 1 10.8430 1.9787 2.0967 14 7 10.8147 -0.1082 2.3026 15 6 12.1000 -0.2900 1.8669 16 1 12.6066 0.5010 1.3338 17 6 12.7525 -1.4906 2.1114 18 7 13.9878 -1.6656 1.6923 19 14 11.8766 -2.8585 3.0342 20 1 11.1623 -3.7297 2.0667 21 1 10.8995 -2.2681 3.9839 22 1 12.8719 -3.6649 3.7854 23 6 9.0346 1.3694 3.0968 24 6 8.0485 0.1986 3.0448 25 1 8.5561 -0.7201 3.3386 26 6 6.8801 0.4657 3.9959 27 6 3.6017 -1.1508 -0.0038 28 8 4.2312 -2.1965 -0.0082 29 6 2.1965 -1.1769 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5140 32 1 -0.3634 0.8900 0.5138 33 1 1.6822 2.1486 -0.0008 34 1 4.1104 2.1344 0.0001 35 1 6.0722 0.9380 -0.5114 36 1 6.0926 -0.8418 -0.5104 37 1 7.9870 -0.0243 -0.3825 38 1 9.0585 -0.9910 0.6616 39 1 8.9608 2.0550 0.4693 40 1 10.2743 0.9962 -0.0986 41 1 10.3599 -0.8184 2.7816 42 1 14.4438 -2.5044 1.8635 43 1 9.4881 1.4191 4.0868 44 1 8.5058 2.3001 2.8913 45 1 6.2282 -0.4075 4.0246 46 1 7.2642 0.6654 4.9963 47 1 6.3156 1.3293 3.6444 48 1 1.6682 -2.1188 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044761165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:04 Heat of formation + Delta-G solvation = -25.403016 kcal Electronic energy + Delta-G solvation = -29777.941125 eV Core-core repulsion = 25833.530406 eV Total energy + Delta-G solvation = -3944.410718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.60995 -41.39577 -38.98445 -38.10975 -36.35116 -35.99185 -34.16551 -33.74707 -31.57276 -31.20539 -30.38299 -28.61012 -27.69626 -25.71312 -24.98017 -24.64680 -23.45784 -22.49318 -21.44554 -19.86326 -19.78339 -18.55825 -18.49387 -18.12369 -17.13832 -17.03018 -16.70400 -16.42901 -16.27843 -15.78861 -15.28333 -15.22301 -15.15759 -14.96927 -14.76909 -14.56926 -14.38097 -14.14833 -13.98796 -13.59369 -13.42288 -13.28401 -13.10481 -13.03895 -12.97919 -12.79110 -12.68796 -12.58129 -12.45833 -12.12571 -12.01615 -11.97685 -11.73960 -11.47038 -11.10640 -10.96767 -10.85812 -10.14977 -9.65291 -9.27385 -8.97792 -8.02260 -5.32674 -0.10995 0.92416 1.32585 1.34496 1.40117 1.41076 1.44936 1.98751 2.44836 2.66098 3.30127 3.34034 3.59272 3.62727 3.73067 3.83791 3.86385 3.89988 3.99465 4.07147 4.14532 4.21625 4.27979 4.33951 4.39570 4.43120 4.59191 4.69109 4.76227 4.79956 4.83875 4.86824 4.90175 5.02278 5.08386 5.11605 5.18525 5.21613 5.26100 5.28545 5.37260 5.49523 5.65060 5.68071 5.81824 6.06821 6.22676 6.34216 6.95678 7.03771 7.09244 7.87122 8.03099 9.19452 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002969 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.135558 B = 9429.189528 C = 9739.129700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.035 3.965 3 C -0.229 4.229 4 C 0.142 3.858 5 N -0.481 5.481 6 C 0.069 3.931 7 C 0.501 3.499 8 O -0.558 6.558 9 N -0.595 5.595 10 C 0.111 3.889 11 C -0.138 4.138 12 C 0.167 3.833 13 H 0.056 0.944 14 N -0.750 5.750 15 C -0.212 4.212 16 H 0.068 0.932 17 C -0.058 4.058 18 N -0.982 5.982 19 Si 0.935 3.065 20 H -0.286 1.286 21 H -0.260 1.260 22 H -0.299 1.299 23 C -0.121 4.121 24 C 0.142 3.858 25 H 0.043 0.957 26 C -0.120 4.120 27 C 0.501 3.499 28 O -0.616 6.616 29 C -0.293 4.293 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.185 0.815 34 H 0.203 0.797 35 H 0.173 0.827 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.048 0.952 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.359 0.641 42 H 0.255 0.745 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.997 13.812 -5.436 31.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.031 3.969 3 C -0.251 4.251 4 C 0.016 3.984 5 N -0.190 5.190 6 C -0.056 4.056 7 C 0.289 3.711 8 O -0.437 6.437 9 N -0.328 5.328 10 C -0.011 4.011 11 C -0.178 4.178 12 C 0.060 3.940 13 H 0.074 0.926 14 N -0.394 5.394 15 C -0.343 4.343 16 H 0.086 0.914 17 C -0.250 4.250 18 N -0.633 5.633 19 Si 0.764 3.236 20 H -0.213 1.213 21 H -0.185 1.185 22 H -0.226 1.226 23 C -0.160 4.160 24 C 0.038 3.962 25 H 0.061 0.939 26 C -0.177 4.177 27 C 0.307 3.693 28 O -0.504 6.504 29 C -0.315 4.315 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.202 0.798 34 H 0.220 0.780 35 H 0.191 0.809 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.193 0.807 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.115 0.885 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -27.782 13.217 -5.036 31.175 hybrid contribution 0.585 -1.937 0.704 2.142 sum -27.198 11.280 -4.332 29.761 Atomic orbital electron populations 1.21037 0.87968 1.04548 1.04346 1.20644 0.98508 0.92058 0.85729 1.21058 0.92348 0.99757 1.11970 1.22707 0.94407 0.89597 0.91720 1.45088 1.07675 1.07562 1.58632 1.22078 0.79260 1.09092 0.95184 1.21040 0.82180 0.76066 0.91860 1.90767 1.56227 1.51019 1.45679 1.48165 1.05095 1.71284 1.08282 1.21816 0.90466 0.99569 0.89293 1.22347 0.98232 0.98193 0.99057 1.20486 0.92446 0.87612 0.93477 0.92626 1.42952 1.12812 1.15163 1.68480 1.19048 0.89358 0.98786 1.27111 0.91417 1.25264 0.96705 1.00135 1.02865 1.69835 1.13133 1.26324 1.54014 0.85720 0.77969 0.80629 0.79256 1.21329 1.18541 1.22555 1.22155 0.95601 0.98177 1.00037 1.21211 0.95356 0.98163 0.81434 0.93851 1.21999 0.95750 1.02706 0.97247 1.17548 0.90348 0.82666 0.78773 1.90917 1.70325 1.32468 1.56704 1.21865 0.91428 1.00829 1.17379 0.88402 0.91069 0.88583 0.79822 0.77980 0.80938 0.86525 0.87083 0.93318 0.88755 0.91564 0.80716 0.93596 0.90766 0.88536 0.93220 0.92551 0.91483 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.03 71.24 0.71 -0.24 16 2 C 0.03 0.52 5.89 -19.82 -0.12 0.40 16 3 C -0.23 -2.42 9.71 22.08 0.21 -2.21 16 4 C 0.14 1.75 10.28 83.42 0.86 2.61 16 5 N -0.48 -10.28 2.07 -655.07 -1.36 -11.64 16 6 C 0.07 1.34 4.17 85.63 0.36 1.70 16 7 C 0.50 13.34 7.57 87.66 0.66 14.00 16 8 O -0.56 -18.17 12.00 -3.05 -0.04 -18.21 16 9 N -0.60 -16.05 2.97 -795.08 -2.36 -18.41 16 10 C 0.11 2.85 6.09 86.36 0.53 3.37 16 11 C -0.14 -3.56 5.78 30.67 0.18 -3.38 16 12 C 0.17 5.40 3.10 45.02 0.14 5.54 16 13 H 0.06 1.88 8.08 -2.39 -0.02 1.86 16 14 N -0.75 -32.26 4.11 -322.81 -1.33 -33.59 16 15 C -0.21 -11.33 10.41 84.03 0.87 -10.45 16 16 H 0.07 3.91 8.06 -2.91 -0.02 3.88 16 17 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 18 N -0.98 -61.96 13.97 21.65 0.30 -61.66 16 19 Si 0.93 46.31 27.74 68.60 1.90 48.22 16 20 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 21 H -0.26 -11.93 6.52 99.48 0.65 -11.28 16 22 H -0.30 -15.11 7.11 99.48 0.71 -14.41 16 23 C -0.12 -3.22 5.08 30.66 0.16 -3.07 16 24 C 0.14 4.18 3.19 44.97 0.14 4.32 16 25 H 0.04 1.53 6.64 -2.39 -0.02 1.51 16 26 C -0.12 -3.37 7.62 71.98 0.55 -2.82 16 27 C 0.50 14.97 7.40 84.82 0.63 15.60 16 28 O -0.62 -24.55 16.63 -5.50 -0.09 -24.64 16 29 C -0.29 -6.98 9.65 22.40 0.22 -6.76 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 32 H 0.10 0.37 8.10 -2.38 -0.02 0.35 16 33 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 34 H 0.20 0.67 8.04 -2.91 -0.02 0.64 16 35 H 0.17 1.44 7.80 -2.39 -0.02 1.42 16 36 H 0.12 2.64 6.94 -2.39 -0.02 2.63 16 37 H 0.11 1.98 5.93 -2.39 -0.01 1.97 16 38 H 0.05 1.62 7.74 -2.38 -0.02 1.60 16 39 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.36 15.75 3.92 -92.71 -0.36 15.39 16 42 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 44 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.05 1.66 6.54 -2.38 -0.02 1.64 16 46 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 47 H 0.07 1.80 6.96 -2.39 -0.02 1.79 16 48 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -84.22 377.80 4.14 -80.09 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.54 Total: 24.13 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 6.57 Total: 15.71 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -4.75 Total: -125.30 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.13 Total: -42.85 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.90 Total: 48.22 kcal Total: -84.22 4.14 -80.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044761165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.684 kcal (2) G-P(sol) polarization free energy of solvation -84.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds