Wall clock time and date at job start Tue Mar 31 2020 18:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40192 * 120.36679 * 2 1 4 4 C 1.35345 * 119.94759 * 179.97438 * 3 2 1 5 5 N 1.35761 * 120.70608 * 0.02562 * 4 3 2 6 6 C 1.46496 * 119.62728 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47146 * 89.99777 * 6 5 4 8 8 O 1.21275 * 119.99995 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99693 * 179.97438 * 7 6 5 10 10 C 1.46930 * 120.63365 * 5.76465 * 9 7 6 11 11 C 1.53189 * 108.77601 * 233.62927 * 10 9 7 12 12 C 1.53044 * 109.31068 * 305.36468 * 11 10 9 13 13 H 1.09006 * 109.46013 * 181.37149 * 12 11 10 14 14 N 1.46496 * 109.46020 * 301.34422 * 12 11 10 15 15 C 1.36939 * 120.00089 * 275.00331 * 14 12 11 16 16 H 1.08001 * 120.00123 * 359.97438 * 15 14 12 17 17 C 1.38812 * 119.99958 * 180.02562 * 15 14 12 18 18 N 1.31621 * 119.99763 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00097 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46939 * 90.00223 * 19 17 15 21 21 H 1.48498 * 109.47068 * 209.99800 * 19 17 15 22 22 H 1.48499 * 109.47019 * 330.00269 * 19 17 15 23 23 C 1.53043 * 109.53825 * 61.36817 * 12 11 10 24 24 C 1.46929 * 120.62708 * 185.78690 * 9 7 6 25 25 H 1.09000 * 109.58243 * 246.30381 * 24 9 7 26 26 C 1.53001 * 109.58775 * 6.57898 * 24 9 7 27 27 C 1.34661 * 120.74565 * 0.24866 * 5 4 3 28 28 O 1.22068 * 119.98600 * 179.70399 * 27 5 4 29 29 C 1.36396 * 120.36443 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47369 * 90.00133 * 1 2 3 31 31 H 1.09000 * 109.47327 * 210.00039 * 1 2 3 32 32 H 1.09004 * 109.47411 * 329.99637 * 1 2 3 33 33 H 1.08002 * 120.02768 * 359.97438 * 3 2 1 34 34 H 1.08003 * 119.64671 * 179.97438 * 4 3 2 35 35 H 1.08996 * 109.47317 * 329.99467 * 6 5 4 36 36 H 1.09007 * 109.46971 * 209.99477 * 6 5 4 37 37 H 1.09002 * 109.58461 * 353.41807 * 10 9 7 38 38 H 1.08998 * 109.58405 * 113.83959 * 10 9 7 39 39 H 1.09005 * 109.49922 * 65.31529 * 11 10 9 40 40 H 1.09000 * 109.49976 * 185.41336 * 11 10 9 41 41 H 0.97003 * 120.00011 * 94.99857 * 14 12 11 42 42 H 0.97000 * 119.99592 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.49754 * 178.68249 * 23 12 11 44 44 H 1.08997 * 109.49902 * 58.58123 * 23 12 11 45 45 H 1.09005 * 109.46344 * 54.21915 * 26 24 9 46 46 H 1.08996 * 109.47630 * 294.21898 * 26 24 9 47 47 H 1.08992 * 109.46960 * 174.21325 * 26 24 9 48 48 H 1.08000 * 120.35202 * 0.03484 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5691 1.1997 0.0005 5 7 4.2538 0.0274 0.0005 6 6 5.7187 0.0442 0.0005 7 6 6.2210 0.0501 1.4214 8 8 5.4329 0.0406 2.3432 9 7 7.5460 0.0648 1.6676 10 6 8.5104 0.2023 0.5676 11 6 9.5167 -0.9499 0.6473 12 6 10.1508 -0.9727 2.0400 13 1 10.8851 -1.7766 2.0916 14 7 10.8118 0.3093 2.2964 15 6 12.0929 0.5184 1.8601 16 1 12.6161 -0.2619 1.3273 17 6 12.7194 1.7330 2.1034 18 7 13.9509 1.9338 1.6845 19 14 11.8147 3.0824 3.0255 20 1 12.0685 2.9425 4.4819 21 1 12.2992 4.4080 2.5637 22 1 10.3573 2.9693 2.7639 23 6 9.0650 -1.2061 3.0930 24 6 8.0535 -0.0568 3.0411 25 1 8.5391 0.8738 3.3348 26 6 6.8924 -0.3518 3.9927 27 6 3.6016 -1.1508 -0.0050 28 8 4.2312 -2.1965 -0.0104 29 6 2.1965 -1.1769 0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.6821 2.1486 -0.0004 34 1 4.1102 2.1344 0.0001 35 1 6.0717 0.9383 -0.5134 36 1 6.0922 -0.8416 -0.5132 37 1 7.9846 0.1630 -0.3864 38 1 9.0355 1.1531 0.6588 39 1 9.0036 -1.8944 0.4657 40 1 10.2936 -0.8071 -0.1038 41 1 10.3420 1.0100 2.7751 42 1 14.3885 2.7827 1.8542 43 1 9.5203 -1.2455 4.0825 44 1 8.5561 -2.1480 2.8883 45 1 6.3482 -1.2283 3.6409 46 1 6.2201 0.5055 4.0225 47 1 7.2818 -0.5432 4.9926 48 1 1.6682 -2.1189 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044761167.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:08 Heat of formation + Delta-G solvation = -2.479746 kcal Electronic energy + Delta-G solvation = -29791.308985 eV Core-core repulsion = 25847.892294 eV Total energy + Delta-G solvation = -3943.416691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70618 -40.26348 -37.69318 -37.16374 -35.51531 -34.42254 -32.91796 -32.01025 -30.60416 -29.81431 -29.49155 -27.49994 -26.77357 -24.33349 -23.90949 -23.17621 -22.41114 -21.56969 -20.22622 -18.58018 -17.81129 -17.72182 -17.61896 -17.05942 -16.22900 -15.95652 -15.39360 -15.28847 -14.66611 -14.47834 -14.34155 -14.30158 -13.86665 -13.77960 -13.61778 -13.51945 -13.28344 -12.98401 -12.71304 -12.53271 -12.41105 -12.30336 -12.09085 -11.90812 -11.85920 -11.70353 -11.37841 -11.08851 -10.98179 -10.82143 -10.57632 -10.32515 -10.19711 -10.09313 -10.01745 -9.64284 -9.07182 -9.00325 -8.40069 -8.13470 -7.35644 -5.84338 -3.20325 0.62324 1.70451 2.28498 2.52028 3.03546 3.28001 3.32526 3.38821 3.51519 4.26201 4.34013 4.37046 4.50854 4.51204 4.72780 4.88083 4.97918 4.99176 5.08096 5.13184 5.16785 5.19962 5.27377 5.29613 5.43318 5.49991 5.51186 5.53314 5.67631 5.72095 5.82181 5.82529 5.90645 5.97700 6.12647 6.14302 6.25199 6.30058 6.34468 6.41111 6.55719 6.59916 6.65762 6.87017 6.89265 7.46651 7.90842 7.91972 8.13882 8.34692 9.12525 9.85051 10.04726 11.33958 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.002933 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.971626 B = 9545.054414 C = 9783.942564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.015 3.985 3 C -0.233 4.233 4 C 0.148 3.852 5 N -0.480 5.480 6 C 0.068 3.932 7 C 0.503 3.497 8 O -0.529 6.529 9 N -0.596 5.596 10 C 0.110 3.890 11 C -0.150 4.150 12 C 0.179 3.821 13 H 0.062 0.938 14 N -0.746 5.746 15 C -0.243 4.243 16 H 0.091 0.909 17 C 0.006 3.994 18 N -0.932 5.932 19 Si 0.881 3.119 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.279 1.279 23 C -0.138 4.138 24 C 0.146 3.854 25 H 0.073 0.927 26 C -0.136 4.136 27 C 0.522 3.478 28 O -0.551 6.551 29 C -0.249 4.249 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.160 0.840 35 H 0.119 0.881 36 H 0.130 0.870 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.360 0.640 42 H 0.260 0.740 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.044 0.956 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.726 -0.887 -4.938 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 C -0.256 4.256 4 C 0.020 3.980 5 N -0.190 5.190 6 C -0.058 4.058 7 C 0.289 3.711 8 O -0.407 6.407 9 N -0.329 5.329 10 C -0.012 4.012 11 C -0.191 4.191 12 C 0.070 3.930 13 H 0.080 0.920 14 N -0.390 5.390 15 C -0.373 4.373 16 H 0.109 0.891 17 C -0.190 4.190 18 N -0.580 5.580 19 Si 0.711 3.289 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.176 4.176 24 C 0.043 3.957 25 H 0.091 0.909 26 C -0.193 4.193 27 C 0.324 3.676 28 O -0.434 6.434 29 C -0.270 4.270 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.193 0.807 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -24.436 -1.603 -4.540 24.906 hybrid contribution -0.303 1.242 0.564 1.397 sum -24.739 -0.361 -3.976 25.059 Atomic orbital electron populations 1.20920 0.90441 1.03526 1.02990 1.20186 0.96698 0.92684 0.89338 1.20491 0.92319 0.98875 1.13904 1.21893 0.93604 0.89566 0.92889 1.45074 1.07334 1.07234 1.59341 1.21945 0.79341 1.07152 0.97343 1.20509 0.82741 0.77182 0.90701 1.90767 1.55717 1.49914 1.44277 1.48180 1.04788 1.71213 1.08741 1.21822 0.90342 1.01427 0.87642 1.22497 0.98264 0.96552 1.01811 1.20159 0.92171 0.89835 0.90854 0.92025 1.42877 1.14660 1.12561 1.68923 1.19072 0.88270 0.99869 1.30071 0.89102 1.24658 0.96022 0.97558 1.00730 1.69694 1.12125 1.24919 1.51256 0.86631 0.79072 0.82786 0.80393 1.21048 1.21734 1.20569 1.22301 0.96594 0.97736 1.01014 1.21272 0.94931 0.99047 0.80403 0.90933 1.22194 0.96650 1.03759 0.96742 1.17078 0.89316 0.82461 0.78723 1.90963 1.69144 1.30254 1.52992 1.21903 0.92280 0.99496 1.13365 0.90167 0.90864 0.90805 0.83819 0.82256 0.86305 0.85252 0.91046 0.89765 0.92625 0.90068 0.80659 0.93029 0.90476 0.91442 0.91900 0.90753 0.93734 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.03 36.00 0.36 -0.31 16 2 C 0.01 0.13 5.89 -104.55 -0.62 -0.49 16 3 C -0.23 -1.80 9.71 -39.88 -0.39 -2.19 16 4 C 0.15 1.28 10.28 -16.84 -0.17 1.11 16 5 N -0.48 -5.63 2.07 -121.06 -0.25 -5.88 16 6 C 0.07 0.75 4.17 -5.19 -0.02 0.73 16 7 C 0.50 7.24 7.57 -10.98 -0.08 7.15 16 8 O -0.53 -8.98 12.00 5.56 0.07 -8.92 16 9 N -0.60 -8.69 2.97 -165.22 -0.49 -9.18 16 10 C 0.11 1.52 6.09 -3.71 -0.02 1.50 16 11 C -0.15 -2.31 5.78 -26.61 -0.15 -2.46 16 12 C 0.18 3.18 3.10 -67.89 -0.21 2.97 16 13 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 14 N -0.75 -16.12 4.11 -53.38 -0.22 -16.34 16 15 C -0.24 -6.39 10.41 -15.06 -0.16 -6.54 16 16 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 17 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 18 N -0.93 -28.23 13.97 55.49 0.78 -27.45 16 19 Si 0.88 21.21 27.74 -169.99 -4.71 16.50 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 23 C -0.14 -2.14 5.07 -26.61 -0.13 -2.28 16 24 C 0.15 2.29 3.19 -67.60 -0.22 2.07 16 25 H 0.07 1.23 6.65 -51.93 -0.35 0.89 16 26 C -0.14 -2.08 7.61 37.16 0.28 -1.80 16 27 C 0.52 7.50 7.40 -15.44 -0.11 7.38 16 28 O -0.55 -9.97 16.64 4.86 0.08 -9.88 16 29 C -0.25 -2.87 9.65 -39.38 -0.38 -3.25 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 32 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 33 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.16 0.88 8.04 -52.48 -0.42 0.46 16 35 H 0.12 0.88 7.58 -51.93 -0.39 0.48 16 36 H 0.13 1.50 7.16 -51.93 -0.37 1.12 16 37 H 0.07 0.75 5.93 -51.93 -0.31 0.44 16 38 H 0.08 1.34 7.74 -51.93 -0.40 0.93 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.36 7.77 3.93 -40.82 -0.16 7.61 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 1.05 6.96 -51.93 -0.36 0.69 16 46 H 0.07 1.21 6.54 -51.93 -0.34 0.87 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 377.81 15.07 5.69 5.69 Total: -1.00 -34.87 377.81 -8.52 -43.39 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.34 Total: 8.40 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -2.12 Total: 3.67 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.19 Total: -58.85 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.15 Total: -18.80 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.71 Total: 16.50 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.87 -8.52 -43.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044761167.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.907 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds