Wall clock time and date at job start Tue Mar 31 2020 18:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40192 * 120.36679 * 2 1 4 4 C 1.35345 * 119.94759 * 179.97438 * 3 2 1 5 5 N 1.35761 * 120.70608 * 0.02562 * 4 3 2 6 6 C 1.46496 * 119.62728 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47146 * 89.99777 * 6 5 4 8 8 O 1.21275 * 119.99995 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99693 * 179.97438 * 7 6 5 10 10 C 1.46930 * 120.63365 * 5.76465 * 9 7 6 11 11 C 1.53189 * 108.77601 * 233.62927 * 10 9 7 12 12 C 1.53044 * 109.31068 * 305.36468 * 11 10 9 13 13 H 1.09006 * 109.46013 * 181.37149 * 12 11 10 14 14 N 1.46496 * 109.46020 * 301.34422 * 12 11 10 15 15 C 1.36939 * 120.00089 * 275.00331 * 14 12 11 16 16 H 1.08001 * 120.00123 * 359.97438 * 15 14 12 17 17 C 1.38812 * 119.99958 * 180.02562 * 15 14 12 18 18 N 1.31621 * 119.99763 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00097 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46939 * 90.00223 * 19 17 15 21 21 H 1.48498 * 109.47068 * 209.99800 * 19 17 15 22 22 H 1.48499 * 109.47019 * 330.00269 * 19 17 15 23 23 C 1.53043 * 109.53825 * 61.36817 * 12 11 10 24 24 C 1.46929 * 120.62708 * 185.78690 * 9 7 6 25 25 H 1.09000 * 109.58243 * 246.30381 * 24 9 7 26 26 C 1.53001 * 109.58775 * 6.57898 * 24 9 7 27 27 C 1.34661 * 120.74565 * 0.24866 * 5 4 3 28 28 O 1.22068 * 119.98600 * 179.70399 * 27 5 4 29 29 C 1.36396 * 120.36443 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47369 * 90.00133 * 1 2 3 31 31 H 1.09000 * 109.47327 * 210.00039 * 1 2 3 32 32 H 1.09004 * 109.47411 * 329.99637 * 1 2 3 33 33 H 1.08002 * 120.02768 * 359.97438 * 3 2 1 34 34 H 1.08003 * 119.64671 * 179.97438 * 4 3 2 35 35 H 1.08996 * 109.47317 * 329.99467 * 6 5 4 36 36 H 1.09007 * 109.46971 * 209.99477 * 6 5 4 37 37 H 1.09002 * 109.58461 * 353.41807 * 10 9 7 38 38 H 1.08998 * 109.58405 * 113.83959 * 10 9 7 39 39 H 1.09005 * 109.49922 * 65.31529 * 11 10 9 40 40 H 1.09000 * 109.49976 * 185.41336 * 11 10 9 41 41 H 0.97003 * 120.00011 * 94.99857 * 14 12 11 42 42 H 0.97000 * 119.99592 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.49754 * 178.68249 * 23 12 11 44 44 H 1.08997 * 109.49902 * 58.58123 * 23 12 11 45 45 H 1.09005 * 109.46344 * 54.21915 * 26 24 9 46 46 H 1.08996 * 109.47630 * 294.21898 * 26 24 9 47 47 H 1.08992 * 109.46960 * 174.21325 * 26 24 9 48 48 H 1.08000 * 120.35202 * 0.03484 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5691 1.1997 0.0005 5 7 4.2538 0.0274 0.0005 6 6 5.7187 0.0442 0.0005 7 6 6.2210 0.0501 1.4214 8 8 5.4329 0.0406 2.3432 9 7 7.5460 0.0648 1.6676 10 6 8.5104 0.2023 0.5676 11 6 9.5167 -0.9499 0.6473 12 6 10.1508 -0.9727 2.0400 13 1 10.8851 -1.7766 2.0916 14 7 10.8118 0.3093 2.2964 15 6 12.0929 0.5184 1.8601 16 1 12.6161 -0.2619 1.3273 17 6 12.7194 1.7330 2.1034 18 7 13.9509 1.9338 1.6845 19 14 11.8147 3.0824 3.0255 20 1 12.0685 2.9425 4.4819 21 1 12.2992 4.4080 2.5637 22 1 10.3573 2.9693 2.7639 23 6 9.0650 -1.2061 3.0930 24 6 8.0535 -0.0568 3.0411 25 1 8.5391 0.8738 3.3348 26 6 6.8924 -0.3518 3.9927 27 6 3.6016 -1.1508 -0.0050 28 8 4.2312 -2.1965 -0.0104 29 6 2.1965 -1.1769 0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.6821 2.1486 -0.0004 34 1 4.1102 2.1344 0.0001 35 1 6.0717 0.9383 -0.5134 36 1 6.0922 -0.8416 -0.5132 37 1 7.9846 0.1630 -0.3864 38 1 9.0355 1.1531 0.6588 39 1 9.0036 -1.8944 0.4657 40 1 10.2936 -0.8071 -0.1038 41 1 10.3420 1.0100 2.7751 42 1 14.3885 2.7827 1.8542 43 1 9.5203 -1.2455 4.0825 44 1 8.5561 -2.1480 2.8883 45 1 6.3482 -1.2283 3.6409 46 1 6.2201 0.5055 4.0225 47 1 7.2818 -0.5432 4.9926 48 1 1.6682 -2.1189 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044761167.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:07 Heat of formation + Delta-G solvation = -24.682112 kcal Electronic energy + Delta-G solvation = -29792.271752 eV Core-core repulsion = 25847.892294 eV Total energy + Delta-G solvation = -3944.379458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.60751 -41.39847 -39.00070 -38.09215 -36.35134 -35.98996 -34.17362 -33.75089 -31.57713 -31.21727 -30.37609 -28.62912 -27.70050 -25.72484 -24.98666 -24.64944 -23.47620 -22.50025 -21.46123 -19.88084 -19.78206 -18.52813 -18.50020 -18.14983 -17.19819 -16.96391 -16.70315 -16.42635 -16.25071 -15.79303 -15.31377 -15.21523 -15.16904 -14.94878 -14.76846 -14.58380 -14.38837 -14.14403 -13.99415 -13.59843 -13.42609 -13.28441 -13.14320 -13.00132 -12.97929 -12.77513 -12.68565 -12.55722 -12.45989 -12.14936 -12.04995 -11.94899 -11.72141 -11.49464 -11.09051 -10.96287 -10.86053 -10.15304 -9.65273 -9.27430 -8.97631 -7.98850 -5.31501 -0.11462 0.92224 1.36566 1.39725 1.40677 1.46153 1.47216 1.99158 2.49437 2.66172 3.31913 3.34100 3.56694 3.62540 3.71706 3.81590 3.85299 3.89292 3.97061 4.06156 4.14494 4.21537 4.25434 4.33926 4.39305 4.39750 4.55367 4.66843 4.74003 4.79081 4.83004 4.83834 4.90290 4.98444 5.04264 5.10097 5.16582 5.18717 5.25326 5.26528 5.33693 5.49191 5.61957 5.66676 5.82682 6.06679 6.24571 6.34027 6.95816 7.03765 7.10908 7.86435 8.05822 9.22810 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.002933 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.971626 B = 9545.054414 C = 9783.942564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.229 4.229 4 C 0.138 3.862 5 N -0.481 5.481 6 C 0.069 3.931 7 C 0.501 3.499 8 O -0.557 6.557 9 N -0.596 5.596 10 C 0.114 3.886 11 C -0.144 4.144 12 C 0.172 3.828 13 H 0.048 0.952 14 N -0.744 5.744 15 C -0.218 4.218 16 H 0.060 0.940 17 C -0.061 4.061 18 N -0.984 5.984 19 Si 0.946 3.054 20 H -0.285 1.285 21 H -0.298 1.298 22 H -0.251 1.251 23 C -0.127 4.127 24 C 0.145 3.855 25 H 0.063 0.937 26 C -0.121 4.121 27 C 0.503 3.497 28 O -0.611 6.611 29 C -0.290 4.290 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.182 0.818 34 H 0.197 0.803 35 H 0.165 0.835 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.363 0.637 42 H 0.256 0.744 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.045 0.955 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.916 1.170 -5.240 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 C -0.251 4.251 4 C 0.012 3.988 5 N -0.190 5.190 6 C -0.056 4.056 7 C 0.288 3.712 8 O -0.437 6.437 9 N -0.330 5.330 10 C -0.008 4.008 11 C -0.185 4.185 12 C 0.064 3.936 13 H 0.066 0.934 14 N -0.389 5.389 15 C -0.350 4.350 16 H 0.078 0.922 17 C -0.253 4.253 18 N -0.635 5.635 19 Si 0.774 3.226 20 H -0.212 1.212 21 H -0.225 1.225 22 H -0.176 1.176 23 C -0.166 4.166 24 C 0.042 3.958 25 H 0.081 0.919 26 C -0.178 4.178 27 C 0.309 3.691 28 O -0.499 6.499 29 C -0.311 4.311 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.199 0.801 34 H 0.214 0.786 35 H 0.182 0.818 36 H 0.142 0.858 37 H 0.129 0.871 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.197 0.803 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -27.701 0.456 -4.851 28.127 hybrid contribution 0.605 0.559 0.639 1.043 sum -27.096 1.015 -4.212 27.440 Atomic orbital electron populations 1.21035 0.87950 1.04548 1.04341 1.20629 0.98513 0.92037 0.85926 1.21035 0.92277 0.99849 1.11924 1.22643 0.94455 0.89635 0.92050 1.45085 1.07641 1.07551 1.58735 1.22065 0.79298 1.09056 0.95197 1.21033 0.82195 0.76078 0.91847 1.90757 1.56277 1.51016 1.45625 1.48192 1.05161 1.71274 1.08334 1.21828 0.90166 0.99607 0.89232 1.22358 0.98411 0.98333 0.99388 1.20358 0.92507 0.87576 0.93148 0.93382 1.42809 1.13192 1.14083 1.68772 1.19002 0.89618 0.98549 1.27784 0.92221 1.25379 0.96877 1.00283 1.02714 1.69872 1.14251 1.25497 1.53905 0.85554 0.79327 0.79134 0.78542 1.21202 1.22512 1.17606 1.22187 0.95834 0.98320 1.00274 1.21203 0.94884 0.98322 0.81416 0.91905 1.22009 0.96065 1.02489 0.97276 1.17518 0.90294 0.82587 0.78736 1.90907 1.70234 1.32195 1.56523 1.21891 0.91462 1.00793 1.16998 0.88412 0.90874 0.88780 0.80096 0.78577 0.81792 0.85755 0.87113 0.91337 0.90956 0.91297 0.80264 0.93536 0.90303 0.90474 0.93621 0.91625 0.92447 0.84174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.03 71.24 0.71 -0.24 16 2 C 0.03 0.49 5.89 -19.82 -0.12 0.38 16 3 C -0.23 -2.62 9.71 22.08 0.21 -2.41 16 4 C 0.14 1.88 10.28 83.42 0.86 2.74 16 5 N -0.48 -10.37 2.07 -655.05 -1.36 -11.72 16 6 C 0.07 1.35 4.17 85.63 0.36 1.71 16 7 C 0.50 13.41 7.57 87.66 0.66 14.07 16 8 O -0.56 -18.22 12.00 -3.01 -0.04 -18.25 16 9 N -0.60 -16.11 2.97 -795.02 -2.36 -18.48 16 10 C 0.11 2.86 6.09 86.36 0.53 3.39 16 11 C -0.14 -4.23 5.78 30.67 0.18 -4.06 16 12 C 0.17 5.97 3.10 45.02 0.14 6.11 16 13 H 0.05 1.80 8.08 -2.38 -0.02 1.78 16 14 N -0.74 -31.57 4.11 -322.80 -1.33 -32.89 16 15 C -0.22 -11.60 10.41 84.03 0.87 -10.73 16 16 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 17 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 18 N -0.98 -61.11 13.97 21.65 0.30 -60.81 16 19 Si 0.95 43.62 27.74 68.60 1.90 45.53 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.25 -10.28 6.52 99.48 0.65 -9.63 16 23 C -0.13 -3.80 5.07 30.67 0.16 -3.64 16 24 C 0.14 4.29 3.19 44.97 0.14 4.44 16 25 H 0.06 2.01 6.65 -2.39 -0.02 1.99 16 26 C -0.12 -3.55 7.61 71.98 0.55 -3.00 16 27 C 0.50 14.53 7.40 84.82 0.63 15.16 16 28 O -0.61 -23.03 16.64 -5.54 -0.09 -23.12 16 29 C -0.29 -6.67 9.65 22.40 0.22 -6.45 16 30 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.07 0.61 8.09 -2.39 -0.02 0.59 16 32 H 0.09 0.40 8.10 -2.38 -0.02 0.38 16 33 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.20 1.12 8.04 -2.91 -0.02 1.10 16 35 H 0.16 1.65 7.58 -2.39 -0.02 1.64 16 36 H 0.12 2.66 7.16 -2.38 -0.02 2.64 16 37 H 0.11 1.92 5.93 -2.39 -0.01 1.91 16 38 H 0.07 1.99 7.74 -2.39 -0.02 1.98 16 39 H 0.07 1.90 8.14 -2.38 -0.02 1.89 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.36 15.04 3.93 -92.71 -0.36 14.68 16 42 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 43 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 44 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.04 1.49 6.96 -2.38 -0.02 1.48 16 46 H 0.06 2.05 6.54 -2.39 -0.02 2.03 16 47 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -80.38 377.81 4.14 -76.24 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.54 Total: 29.03 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 6.57 Total: 14.49 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -4.75 Total: -123.91 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.13 Total: -41.37 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.90 Total: 45.53 kcal Total: -80.38 4.14 -76.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044761167.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.556 kcal (2) G-P(sol) polarization free energy of solvation -80.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds