Wall clock time and date at job start Tue Mar 31 2020 17:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.45746 * 2 1 4 4 C 1.34781 * 119.99582 * 60.02881 * 3 2 1 5 5 O 1.21602 * 120.00433 * 359.97438 * 4 3 2 6 6 C 1.47419 * 119.99460 * 179.97438 * 4 3 2 7 7 C 1.36099 * 126.44869 * 179.97438 * 6 4 3 8 8 O 1.34254 * 106.95140 * 180.02562 * 7 6 4 9 9 C 1.34053 * 108.22550 * 359.97438 * 8 7 6 10 10 C 1.50698 * 125.37705 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46995 * 270.02320 * 10 9 8 12 12 C 1.53005 * 117.50023 * 243.74433 * 11 10 9 13 13 C 1.53001 * 117.49991 * 175.08619 * 11 10 9 14 14 N 1.29935 * 109.24405 * 359.97438 * 9 8 7 15 15 C 1.53040 * 109.44801 * 119.96929 * 2 1 3 16 16 C 1.53194 * 109.31082 * 181.38427 * 15 2 1 17 17 N 1.46925 * 108.77163 * 305.35735 * 16 15 2 18 18 C 1.36940 * 120.63295 * 233.62976 * 17 16 15 19 19 H 1.08003 * 119.99496 * 27.67263 * 18 17 16 20 20 C 1.38810 * 120.00222 * 207.66843 * 18 17 16 21 21 N 1.31622 * 119.99717 * 17.36469 * 20 18 17 22 22 Si 1.86801 * 120.00258 * 197.36312 * 20 18 17 23 23 H 1.48502 * 109.46939 * 90.00104 * 22 20 18 24 24 H 1.48497 * 109.47224 * 209.99976 * 22 20 18 25 25 H 1.48500 * 109.46605 * 330.00318 * 22 20 18 26 26 C 1.46931 * 118.73694 * 53.61472 * 17 16 15 27 27 C 1.53037 * 109.46146 * 240.02821 * 2 1 3 28 28 H 1.08996 * 109.47243 * 60.00085 * 1 2 3 29 29 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47276 * 299.99919 * 1 2 3 31 31 H 0.96997 * 120.00325 * 240.02158 * 3 2 1 32 32 H 1.08000 * 126.52142 * 359.97438 * 7 6 4 33 33 H 1.09009 * 109.47298 * 30.01818 * 10 9 8 34 34 H 1.08999 * 109.47743 * 150.02300 * 10 9 8 35 35 H 1.08998 * 115.55032 * 29.41709 * 11 10 9 36 36 H 1.08994 * 117.49455 * 0.02562 * 12 11 10 37 37 H 1.08999 * 117.49801 * 145.01600 * 12 11 10 38 38 H 1.09005 * 117.49624 * 214.98008 * 13 11 10 39 39 H 1.09001 * 117.49927 * 359.97421 * 13 11 10 40 40 H 1.09007 * 109.49360 * 301.33098 * 15 2 1 41 41 H 1.09000 * 109.50042 * 61.42834 * 15 2 1 42 42 H 1.09005 * 109.58603 * 185.57391 * 16 15 2 43 43 H 1.08995 * 109.58964 * 65.14630 * 16 15 2 44 44 H 0.96999 * 119.99556 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.58567 * 186.59933 * 26 17 16 46 46 H 1.08997 * 109.70418 * 66.24763 * 26 17 16 47 47 H 1.08998 * 109.50295 * 298.57912 * 27 2 1 48 48 H 1.09008 * 109.49889 * 58.64315 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6927 2.2109 1.0112 5 8 0.9937 1.8130 1.9232 6 6 2.1842 3.6008 1.0115 7 6 1.9376 4.5455 1.9596 8 8 2.5704 5.6641 1.5715 9 6 3.1926 5.4127 0.4111 10 6 4.0191 6.4030 -0.3682 11 6 3.1208 7.1538 -1.3531 12 6 3.3983 6.9670 -2.8461 13 6 3.7523 8.2893 -2.1610 14 7 2.9706 4.1803 0.0643 15 6 2.0396 -0.7209 1.2501 16 6 3.5711 -0.6889 1.2645 17 7 4.0676 -1.2493 0.0004 18 6 4.9754 -2.2746 0.0005 19 1 5.0079 -2.9668 0.8288 20 6 5.8537 -2.4241 -1.0640 21 7 6.0603 -1.4224 -1.8924 22 14 6.7424 -4.0470 -1.3208 23 1 5.9247 -4.9263 -2.1946 24 1 8.0572 -3.7951 -1.9634 25 1 6.9516 -4.7097 -0.0084 26 6 3.5714 -0.6889 -1.2640 27 6 2.0399 -0.7208 -1.2500 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 2.5754 1.6989 -0.7276 32 1 1.3448 4.4194 2.8536 33 1 4.4782 7.1137 0.3192 34 1 4.7979 5.8739 -0.9174 35 1 2.0819 7.2725 -1.0453 36 1 4.2207 6.3089 -3.1266 37 1 2.5421 6.9631 -3.5206 38 1 3.1287 9.1548 -2.3850 39 1 4.8077 8.5017 -1.9905 40 1 1.6569 -0.2207 2.1399 41 1 1.6974 -1.7557 1.2383 42 1 3.9413 -1.2848 2.0988 43 1 3.9142 0.3406 1.3676 44 1 6.6743 -1.5268 -2.6361 45 1 3.9417 -1.2849 -2.0981 46 1 3.9145 0.3402 -1.3696 47 1 1.6977 -1.7557 -1.2383 48 1 1.6570 -0.2211 -2.1399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045603215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:49 Heat of formation + Delta-G solvation = 9.530926 kcal Electronic energy + Delta-G solvation = -29469.472426 eV Core-core repulsion = 25526.576557 eV Total energy + Delta-G solvation = -3942.895869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.47147 -41.38786 -38.90411 -38.47059 -36.13778 -35.94391 -33.68164 -32.91537 -32.19352 -31.61171 -29.11948 -28.90940 -26.01408 -25.40425 -23.98218 -23.21998 -23.09433 -22.61916 -21.92768 -21.24945 -20.16201 -19.30895 -18.68274 -17.84500 -17.59183 -16.87066 -16.73339 -16.38306 -15.99878 -15.76393 -15.52254 -15.23891 -15.16896 -14.86409 -14.72060 -14.63835 -14.49204 -14.05934 -13.76586 -13.34557 -13.13207 -13.05587 -12.90491 -12.75939 -12.63902 -12.55419 -12.32490 -12.26208 -12.15673 -12.02036 -11.85202 -11.77441 -11.50072 -11.33682 -11.29038 -10.90907 -10.74972 -10.53980 -10.14488 -9.90510 -8.68048 -7.87357 -5.32470 0.07828 0.95333 1.46928 1.48100 1.54113 1.56980 2.12150 2.28730 2.51121 2.79484 2.92853 3.26729 3.58831 3.69087 3.78270 3.80062 3.88581 4.00210 4.03000 4.11246 4.11557 4.27555 4.45780 4.46267 4.60381 4.62177 4.68607 4.71524 4.75421 4.76567 4.86187 4.86889 4.89562 4.94670 5.02546 5.10356 5.12209 5.18521 5.26813 5.27402 5.30992 5.34335 5.45566 5.62417 5.63620 5.74264 6.36841 6.39223 6.64179 7.14382 7.15592 7.84641 8.37738 9.18638 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.003358 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.014657 B = 8335.770193 C = 9757.150934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.184 3.816 3 N -0.692 5.692 4 C 0.601 3.399 5 O -0.558 6.558 6 C -0.102 4.102 7 C 0.027 3.973 8 O -0.193 6.193 9 C 0.205 3.795 10 C 0.008 3.992 11 C -0.162 4.162 12 C -0.187 4.187 13 C -0.154 4.154 14 N -0.483 5.483 15 C -0.130 4.130 16 C 0.153 3.847 17 N -0.605 5.605 18 C -0.265 4.265 19 H 0.062 0.938 20 C -0.047 4.047 21 N -0.931 5.931 22 Si 0.967 3.033 23 H -0.283 1.283 24 H -0.294 1.294 25 H -0.272 1.272 26 C 0.181 3.819 27 C -0.132 4.132 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.405 0.595 32 H 0.259 0.741 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.044 0.956 43 H -0.002 1.002 44 H 0.250 0.750 45 H 0.058 0.942 46 H -0.001 1.001 47 H 0.075 0.925 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.302 18.814 1.692 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.098 3.902 3 N -0.341 5.341 4 C 0.387 3.613 5 O -0.438 6.438 6 C -0.221 4.221 7 C -0.048 4.048 8 O -0.078 6.078 9 C -0.005 4.005 10 C -0.029 4.029 11 C -0.181 4.181 12 C -0.224 4.224 13 C -0.191 4.191 14 N -0.213 5.213 15 C -0.170 4.170 16 C 0.027 3.973 17 N -0.329 5.329 18 C -0.396 4.396 19 H 0.080 0.920 20 C -0.243 4.243 21 N -0.577 5.577 22 Si 0.796 3.204 23 H -0.210 1.210 24 H -0.221 1.221 25 H -0.197 1.197 26 C 0.055 3.945 27 C -0.171 4.171 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.241 0.759 32 H 0.275 0.725 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.016 0.984 44 H 0.059 0.941 45 H 0.076 0.924 46 H 0.017 0.983 47 H 0.093 0.907 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.435 18.218 1.653 20.583 hybrid contribution 0.768 -0.617 0.012 0.985 sum -8.667 17.601 1.664 19.690 Atomic orbital electron populations 1.22119 0.92980 1.03044 1.02622 1.20319 0.94276 0.79757 0.95807 1.45996 1.51886 1.11672 1.24578 1.16913 0.79399 0.83005 0.81970 1.90699 1.39875 1.76575 1.36662 1.21892 1.06164 0.97459 0.96570 1.25769 0.96507 0.81837 1.00643 1.84410 1.51116 1.36903 1.35410 1.26791 0.96772 0.92843 0.84086 1.19927 0.94206 0.93256 0.95529 1.22074 0.99837 1.03539 0.92665 1.23157 1.03861 1.01125 0.94271 1.23119 1.02555 0.91950 1.01459 1.70784 1.15502 1.07233 1.27801 1.22251 0.96268 1.00251 0.98216 1.20839 0.93090 0.94708 0.88640 1.44275 1.48346 1.39486 1.00771 1.19494 1.10321 1.03511 1.06224 0.91981 1.25756 0.98212 1.00400 0.99884 1.70186 1.38523 1.30617 1.18352 0.85270 0.77295 0.79941 0.77936 1.20956 1.22103 1.19712 1.20544 0.89766 0.95202 0.88989 1.22329 0.97797 1.00690 0.96272 0.92032 0.90606 0.91616 0.75891 0.72505 0.85684 0.87232 0.88136 0.88635 0.88752 0.87419 0.87079 0.90663 0.91249 0.93700 0.98414 0.94057 0.92364 0.98305 0.90661 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.39 8.40 71.98 0.60 -3.78 16 2 C 0.18 6.39 0.66 3.63 0.00 6.39 16 3 N -0.69 -24.38 4.10 -426.03 -1.74 -26.13 16 4 C 0.60 20.63 7.23 86.66 0.63 21.26 16 5 O -0.56 -20.15 13.10 -4.04 -0.05 -20.20 16 6 C -0.10 -3.10 6.99 40.41 0.28 -2.81 16 7 C 0.03 0.61 11.95 67.32 0.80 1.42 16 8 O -0.19 -4.23 10.73 0.39 0.00 -4.23 16 9 C 0.20 4.81 7.51 88.39 0.66 5.48 16 10 C 0.01 0.13 6.12 29.85 0.18 0.32 16 11 C -0.16 -2.35 5.72 -10.79 -0.06 -2.41 16 12 C -0.19 -2.76 10.18 30.62 0.31 -2.45 16 13 C -0.15 -1.62 10.25 30.62 0.31 -1.31 16 14 N -0.48 -14.62 11.06 -293.03 -3.24 -17.86 16 15 C -0.13 -4.97 4.67 30.67 0.14 -4.83 16 16 C 0.15 6.99 6.26 86.36 0.54 7.53 16 17 N -0.61 -31.30 2.99 -699.08 -2.09 -33.39 16 18 C -0.27 -14.96 9.59 84.03 0.81 -14.15 16 19 H 0.06 3.46 7.89 -2.91 -0.02 3.43 16 20 C -0.05 -2.64 4.91 84.86 0.42 -2.22 16 21 N -0.93 -55.10 11.19 21.65 0.24 -54.86 16 22 Si 0.97 45.31 29.59 68.60 2.03 47.34 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 26 C 0.18 8.68 5.03 86.36 0.43 9.12 16 27 C -0.13 -4.89 4.96 30.67 0.15 -4.74 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.06 2.06 6.16 -2.39 -0.01 2.04 16 31 H 0.41 14.93 7.00 -92.71 -0.65 14.28 16 32 H 0.26 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.11 1.78 7.88 -2.39 -0.02 1.76 16 35 H 0.10 1.58 8.07 -2.39 -0.02 1.56 16 36 H 0.10 1.51 8.03 -2.39 -0.02 1.49 16 37 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 2.86 6.20 -2.38 -0.01 2.85 16 41 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.04 2.05 7.93 -2.38 -0.02 2.03 16 43 H 0.00 -0.10 7.74 -2.39 -0.02 -0.12 16 44 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 45 H 0.06 3.16 6.04 -2.38 -0.01 3.14 16 46 H 0.00 -0.05 6.94 -2.39 -0.02 -0.07 16 47 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 48 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 Total: -1.00 -69.30 384.02 1.69 -67.60 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.33 Total: 28.91 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 6.22 Total: 12.80 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -6.84 Total: -132.23 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -69.30 1.69 -67.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045603215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.134 kcal (2) G-P(sol) polarization free energy of solvation -69.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds