Wall clock time and date at job start Tue Mar 31 2020 17:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46204 * 2 1 4 4 C 1.34774 * 119.99622 * 60.02643 * 3 2 1 5 5 O 1.21612 * 120.00150 * 0.02562 * 4 3 2 6 6 C 1.47427 * 119.99661 * 180.27466 * 4 3 2 7 7 C 1.36090 * 126.44847 * 179.74750 * 6 4 3 8 8 O 1.34248 * 106.95086 * 179.97438 * 7 6 4 9 9 C 1.34047 * 108.22801 * 0.02562 * 8 7 6 10 10 C 1.50703 * 125.38365 * 180.02562 * 9 8 7 11 11 C 1.53783 * 113.61224 * 37.47087 * 10 9 8 12 12 C 1.53782 * 87.08137 * 220.02554 * 11 10 9 13 13 C 1.53774 * 87.08182 * 25.43256 * 12 11 10 14 14 N 1.29939 * 109.24532 * 359.76182 * 9 8 7 15 15 C 1.53035 * 109.44851 * 119.96792 * 2 1 3 16 16 C 1.53195 * 109.31367 * 181.37785 * 15 2 1 17 17 N 1.46928 * 108.77467 * 305.36418 * 16 15 2 18 18 C 1.36939 * 120.62949 * 233.62759 * 17 16 15 19 19 H 1.07997 * 120.00079 * 27.66902 * 18 17 16 20 20 C 1.38817 * 119.99622 * 207.66501 * 18 17 16 21 21 N 1.31611 * 120.00178 * 17.36485 * 20 18 17 22 22 Si 1.86802 * 119.99577 * 197.36188 * 20 18 17 23 23 H 1.48502 * 109.47131 * 60.00177 * 22 20 18 24 24 H 1.48497 * 109.46804 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46908 * 300.00216 * 22 20 18 26 26 C 1.46922 * 118.73758 * 53.60743 * 17 16 15 27 27 C 1.53039 * 109.45946 * 240.02866 * 2 1 3 28 28 H 1.09003 * 109.46886 * 59.99915 * 1 2 3 29 29 H 1.08996 * 109.47287 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47360 * 299.99782 * 1 2 3 31 31 H 0.97002 * 120.00376 * 240.03265 * 3 2 1 32 32 H 1.08009 * 126.52423 * 359.97438 * 7 6 4 33 33 H 1.08992 * 112.85299 * 168.78039 * 10 9 8 34 34 H 1.09002 * 113.61560 * 334.56790 * 11 10 9 35 35 H 1.08998 * 113.61312 * 105.46962 * 11 10 9 36 36 H 1.09007 * 113.60775 * 270.88220 * 12 11 10 37 37 H 1.08994 * 113.69436 * 139.99478 * 12 11 10 38 38 H 1.09008 * 113.61327 * 220.02306 * 13 12 11 39 39 H 1.08999 * 113.61496 * 89.12062 * 13 12 11 40 40 H 1.09001 * 109.49907 * 301.32957 * 15 2 1 41 41 H 1.09000 * 109.50030 * 61.42628 * 15 2 1 42 42 H 1.09003 * 109.58746 * 185.57461 * 16 15 2 43 43 H 1.09001 * 109.58421 * 65.15290 * 16 15 2 44 44 H 0.96999 * 120.00059 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.58582 * 186.59929 * 26 17 16 46 46 H 1.09005 * 109.70704 * 66.24817 * 26 17 16 47 47 H 1.09003 * 109.49800 * 298.57702 * 27 2 1 48 48 H 1.08999 * 109.50061 * 58.64263 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2109 1.0111 5 8 0.9944 1.8127 1.9237 6 6 2.1789 3.6027 1.0081 7 6 1.9281 4.5488 1.9536 8 8 2.5577 5.6685 1.5636 9 6 3.1812 5.4167 0.4040 10 6 4.0061 6.4075 -0.3764 11 6 4.8402 7.3479 0.5095 12 6 4.4717 8.4722 -0.4728 13 6 3.2180 7.6518 -0.8190 14 7 2.9668 4.1817 0.0617 15 6 2.0395 -0.7208 1.2501 16 6 3.5711 -0.6890 1.2645 17 7 4.0676 -1.2494 0.0003 18 6 4.9753 -2.2747 0.0004 19 1 5.0078 -2.9670 0.8287 20 6 5.8535 -2.4243 -1.0642 21 7 6.0601 -1.4226 -1.8926 22 14 6.7422 -4.0472 -1.3208 23 1 5.7464 -5.1303 -1.5223 24 1 7.6164 -3.9490 -2.5172 25 1 7.5705 -4.3522 -0.1267 26 6 3.5713 -0.6890 -1.2640 27 6 2.0398 -0.7209 -1.2500 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.5753 1.6989 -0.7277 32 1 1.3353 4.4228 2.8476 33 1 4.5765 5.9431 -1.1807 34 1 4.4266 7.4878 1.5083 35 1 5.9035 7.1085 0.5204 36 1 5.1707 8.5730 -1.3031 37 1 4.2511 9.4229 0.0125 38 1 2.9719 7.6577 -1.8809 39 1 2.3610 7.8747 -0.1835 40 1 1.6569 -0.2207 2.1398 41 1 1.6973 -1.7556 1.2384 42 1 3.9412 -1.2849 2.0987 43 1 3.9142 0.3405 1.3676 44 1 6.6741 -1.5270 -2.6362 45 1 3.9417 -1.2850 -2.0981 46 1 3.9144 0.3402 -1.3697 47 1 1.6976 -1.7557 -1.2382 48 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045616082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:47 Heat of formation + Delta-G solvation = 27.374303 kcal Electronic energy + Delta-G solvation = -29587.454735 eV Core-core repulsion = 25645.332613 eV Total energy + Delta-G solvation = -3942.122122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.49608 -39.96825 -38.93278 -37.30755 -34.88919 -34.36392 -31.92061 -30.98453 -30.41754 -29.83604 -27.38210 -26.38017 -26.03380 -24.44421 -23.89734 -22.25371 -21.86522 -21.19350 -20.52091 -19.48851 -18.58023 -18.09549 -16.86558 -16.81940 -16.59720 -15.91518 -15.50079 -14.89757 -14.77824 -14.59633 -14.08961 -13.82330 -13.55199 -13.36329 -13.14251 -13.12451 -13.02088 -12.90883 -12.76537 -12.37256 -11.81633 -11.60491 -11.40261 -11.33614 -11.24477 -11.14556 -10.89768 -10.87747 -10.81650 -10.78743 -10.67663 -10.34485 -10.26000 -9.89252 -9.83090 -9.59941 -9.20655 -9.02821 -8.57354 -8.41229 -6.61830 -5.75214 -3.16391 1.10512 2.01049 2.46571 3.37107 3.40792 3.46069 3.47812 3.53104 3.78785 4.15479 4.24763 4.46239 4.52650 4.54823 4.80376 4.91494 5.26155 5.32408 5.32973 5.34204 5.40268 5.47690 5.51308 5.54403 5.56307 5.57267 5.60439 5.66028 5.70337 5.97490 6.03323 6.07861 6.09581 6.23324 6.34675 6.38464 6.44458 6.58557 6.70332 6.75188 6.86671 7.00703 7.10889 7.34728 7.46031 7.64895 7.82415 7.96911 8.48613 8.50554 9.25290 9.89067 10.46563 11.33236 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.003298 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.259636 B = 8487.200032 C = 9983.108324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.182 3.818 3 N -0.688 5.688 4 C 0.601 3.399 5 O -0.542 6.542 6 C -0.063 4.063 7 C 0.001 3.999 8 O -0.197 6.197 9 C 0.205 3.795 10 C -0.020 4.020 11 C -0.133 4.133 12 C -0.139 4.139 13 C -0.130 4.130 14 N -0.453 5.453 15 C -0.143 4.143 16 C 0.150 3.850 17 N -0.590 5.590 18 C -0.251 4.251 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.172 3.828 27 C -0.146 4.146 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.409 0.591 32 H 0.229 0.771 33 H 0.134 0.866 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.014 0.986 44 H 0.253 0.747 45 H 0.089 0.911 46 H 0.017 0.983 47 H 0.072 0.928 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.043 18.488 2.580 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.097 3.903 3 N -0.338 5.338 4 C 0.386 3.614 5 O -0.421 6.421 6 C -0.183 4.183 7 C -0.072 4.072 8 O -0.083 6.083 9 C -0.004 4.004 10 C -0.039 4.039 11 C -0.171 4.171 12 C -0.177 4.177 13 C -0.168 4.168 14 N -0.182 5.182 15 C -0.183 4.183 16 C 0.024 3.976 17 N -0.313 5.313 18 C -0.380 4.380 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.046 3.954 27 C -0.185 4.185 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.246 0.754 32 H 0.246 0.754 33 H 0.152 0.848 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.032 0.968 44 H 0.063 0.937 45 H 0.108 0.892 46 H 0.035 0.965 47 H 0.091 0.909 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.157 17.878 2.521 19.812 hybrid contribution 0.499 -0.519 0.097 0.727 sum -7.658 17.359 2.618 19.153 Atomic orbital electron populations 1.22230 0.95302 1.01982 1.02349 1.20346 0.92683 0.79778 0.97458 1.45993 1.51706 1.11742 1.24321 1.16696 0.79853 0.82300 0.82549 1.90727 1.39105 1.76007 1.36285 1.22007 1.03836 0.97614 0.94848 1.25227 0.98261 0.82747 1.01005 1.84309 1.51389 1.37178 1.35450 1.26055 0.97149 0.92743 0.84446 1.21315 0.95343 0.90026 0.97180 1.23024 1.00625 0.94883 0.98579 1.22817 0.97541 0.97747 0.99546 1.23019 0.97705 0.93631 1.02470 1.70835 1.14491 1.05737 1.27148 1.22404 0.99048 0.99681 0.97132 1.20831 0.90852 0.96078 0.89858 1.44029 1.48287 1.39583 0.99415 1.19159 1.09840 1.02910 1.06116 0.91792 1.25015 0.97236 0.97405 1.00024 1.70020 1.37768 1.28988 1.17985 0.86380 0.79235 0.83941 0.77277 1.21087 1.21679 1.20977 1.20742 0.86771 0.97226 0.90704 1.22524 1.01552 0.99946 0.94503 0.93308 0.92073 0.90910 0.75429 0.75444 0.84774 0.89271 0.90143 0.89418 0.90696 0.90194 0.89523 0.90880 0.91683 0.93116 0.96819 0.93668 0.89241 0.96463 0.90908 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 8.40 37.16 0.31 -2.22 16 2 C 0.18 3.27 0.66 -131.78 -0.09 3.18 16 3 N -0.69 -12.20 4.09 -48.63 -0.20 -12.40 16 4 C 0.60 10.48 7.23 -12.52 -0.09 10.39 16 5 O -0.54 -10.05 13.10 5.27 0.07 -9.98 16 6 C -0.06 -0.98 6.99 -83.02 -0.58 -1.56 16 7 C 0.00 0.01 11.94 29.96 0.36 0.37 16 8 O -0.20 -2.35 10.39 6.54 0.07 -2.28 16 9 C 0.21 2.57 7.33 -13.08 -0.10 2.48 16 10 C -0.02 -0.18 4.29 -90.96 -0.39 -0.57 16 11 C -0.13 -0.97 7.62 -25.92 -0.20 -1.17 16 12 C -0.14 -0.79 8.08 -25.92 -0.21 -1.00 16 13 C -0.13 -0.90 7.63 -25.92 -0.20 -1.10 16 14 N -0.45 -6.99 11.06 -7.65 -0.08 -7.08 16 15 C -0.14 -2.78 4.67 -26.61 -0.12 -2.90 16 16 C 0.15 3.39 6.26 -3.71 -0.02 3.37 16 17 N -0.59 -15.04 2.99 -172.31 -0.52 -15.55 16 18 C -0.25 -6.98 9.59 -15.06 -0.14 -7.13 16 19 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 20 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 21 N -0.90 -26.20 11.19 55.49 0.62 -25.58 16 22 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.17 4.05 5.03 -3.71 -0.02 4.03 16 27 C -0.15 -2.77 4.96 -26.61 -0.13 -2.90 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.21 6.17 -51.93 -0.32 0.89 16 31 H 0.41 7.43 7.00 -40.82 -0.29 7.15 16 32 H 0.23 2.11 8.06 -52.48 -0.42 1.69 16 33 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.09 0.67 7.81 -51.93 -0.41 0.27 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.09 0.62 8.09 -51.93 -0.42 0.20 16 40 H 0.07 1.42 6.20 -51.93 -0.32 1.10 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 43 H 0.01 0.33 7.74 -51.93 -0.40 -0.07 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.09 2.36 6.03 -51.93 -0.31 2.05 16 46 H 0.02 0.43 6.94 -51.93 -0.36 0.07 16 47 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -31.90 378.93 -8.51 -40.41 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.44 Total: 6.67 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.71 Total: 3.24 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.18 Total: -60.61 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.14 Total: -12.26 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.90 -8.51 -40.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045616082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.787 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds