Wall clock time and date at job start Tue Mar 31 2020 17:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46204 * 2 1 4 4 C 1.34774 * 119.99622 * 60.02643 * 3 2 1 5 5 O 1.21612 * 120.00150 * 0.02562 * 4 3 2 6 6 C 1.47427 * 119.99661 * 180.27466 * 4 3 2 7 7 C 1.36090 * 126.44847 * 179.74750 * 6 4 3 8 8 O 1.34248 * 106.95086 * 179.97438 * 7 6 4 9 9 C 1.34047 * 108.22801 * 0.02562 * 8 7 6 10 10 C 1.50703 * 125.38365 * 180.02562 * 9 8 7 11 11 C 1.53783 * 113.61224 * 37.47087 * 10 9 8 12 12 C 1.53782 * 87.08137 * 220.02554 * 11 10 9 13 13 C 1.53774 * 87.08182 * 25.43256 * 12 11 10 14 14 N 1.29939 * 109.24532 * 359.76182 * 9 8 7 15 15 C 1.53035 * 109.44851 * 119.96792 * 2 1 3 16 16 C 1.53195 * 109.31367 * 181.37785 * 15 2 1 17 17 N 1.46928 * 108.77467 * 305.36418 * 16 15 2 18 18 C 1.36939 * 120.62949 * 233.62759 * 17 16 15 19 19 H 1.07997 * 120.00079 * 27.66902 * 18 17 16 20 20 C 1.38817 * 119.99622 * 207.66501 * 18 17 16 21 21 N 1.31611 * 120.00178 * 17.36485 * 20 18 17 22 22 Si 1.86802 * 119.99577 * 197.36188 * 20 18 17 23 23 H 1.48502 * 109.47131 * 60.00177 * 22 20 18 24 24 H 1.48497 * 109.46804 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46908 * 300.00216 * 22 20 18 26 26 C 1.46922 * 118.73758 * 53.60743 * 17 16 15 27 27 C 1.53039 * 109.45946 * 240.02866 * 2 1 3 28 28 H 1.09003 * 109.46886 * 59.99915 * 1 2 3 29 29 H 1.08996 * 109.47287 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47360 * 299.99782 * 1 2 3 31 31 H 0.97002 * 120.00376 * 240.03265 * 3 2 1 32 32 H 1.08009 * 126.52423 * 359.97438 * 7 6 4 33 33 H 1.08992 * 112.85299 * 168.78039 * 10 9 8 34 34 H 1.09002 * 113.61560 * 334.56790 * 11 10 9 35 35 H 1.08998 * 113.61312 * 105.46962 * 11 10 9 36 36 H 1.09007 * 113.60775 * 270.88220 * 12 11 10 37 37 H 1.08994 * 113.69436 * 139.99478 * 12 11 10 38 38 H 1.09008 * 113.61327 * 220.02306 * 13 12 11 39 39 H 1.08999 * 113.61496 * 89.12062 * 13 12 11 40 40 H 1.09001 * 109.49907 * 301.32957 * 15 2 1 41 41 H 1.09000 * 109.50030 * 61.42628 * 15 2 1 42 42 H 1.09003 * 109.58746 * 185.57461 * 16 15 2 43 43 H 1.09001 * 109.58421 * 65.15290 * 16 15 2 44 44 H 0.96999 * 120.00059 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.58582 * 186.59929 * 26 17 16 46 46 H 1.09005 * 109.70704 * 66.24817 * 26 17 16 47 47 H 1.09003 * 109.49800 * 298.57702 * 27 2 1 48 48 H 1.08999 * 109.50061 * 58.64263 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2109 1.0111 5 8 0.9944 1.8127 1.9237 6 6 2.1789 3.6027 1.0081 7 6 1.9281 4.5488 1.9536 8 8 2.5577 5.6685 1.5636 9 6 3.1812 5.4167 0.4040 10 6 4.0061 6.4075 -0.3764 11 6 4.8402 7.3479 0.5095 12 6 4.4717 8.4722 -0.4728 13 6 3.2180 7.6518 -0.8190 14 7 2.9668 4.1817 0.0617 15 6 2.0395 -0.7208 1.2501 16 6 3.5711 -0.6890 1.2645 17 7 4.0676 -1.2494 0.0003 18 6 4.9753 -2.2747 0.0004 19 1 5.0078 -2.9670 0.8287 20 6 5.8535 -2.4243 -1.0642 21 7 6.0601 -1.4226 -1.8926 22 14 6.7422 -4.0472 -1.3208 23 1 5.7464 -5.1303 -1.5223 24 1 7.6164 -3.9490 -2.5172 25 1 7.5705 -4.3522 -0.1267 26 6 3.5713 -0.6890 -1.2640 27 6 2.0398 -0.7209 -1.2500 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.5753 1.6989 -0.7277 32 1 1.3353 4.4228 2.8476 33 1 4.5765 5.9431 -1.1807 34 1 4.4266 7.4878 1.5083 35 1 5.9035 7.1085 0.5204 36 1 5.1707 8.5730 -1.3031 37 1 4.2511 9.4229 0.0125 38 1 2.9719 7.6577 -1.8809 39 1 2.3610 7.8747 -0.1835 40 1 1.6569 -0.2207 2.1398 41 1 1.6973 -1.7556 1.2384 42 1 3.9412 -1.2849 2.0987 43 1 3.9142 0.3405 1.3676 44 1 6.6741 -1.5270 -2.6362 45 1 3.9417 -1.2850 -2.0981 46 1 3.9144 0.3402 -1.3697 47 1 1.6976 -1.7557 -1.2382 48 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045616082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:46 Heat of formation + Delta-G solvation = 6.386390 kcal Electronic energy + Delta-G solvation = -29588.364839 eV Core-core repulsion = 25645.332613 eV Total energy + Delta-G solvation = -3943.032226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.51118 -41.40389 -39.55431 -38.87862 -36.14334 -35.96669 -33.67385 -32.50416 -31.73457 -31.42056 -29.10355 -27.14481 -26.59180 -26.01398 -25.40270 -23.98910 -22.96919 -22.51407 -21.87836 -20.35710 -20.15268 -19.16917 -18.68935 -17.86838 -17.70180 -16.87209 -16.70400 -16.38461 -16.18329 -15.96998 -15.65663 -15.35016 -15.14724 -14.86941 -14.70544 -14.55446 -14.05886 -13.76313 -13.53214 -13.35499 -13.33928 -13.13556 -13.06242 -12.89438 -12.64289 -12.53861 -12.36666 -12.21260 -12.03184 -11.92858 -11.87740 -11.77851 -11.50359 -11.42275 -11.38182 -11.34471 -10.76095 -10.53820 -10.13344 -9.90127 -8.68365 -7.87717 -5.32798 0.06023 0.92566 1.46727 1.48730 1.51917 1.55925 2.10760 2.27054 2.51014 2.81045 3.26447 3.54247 3.57363 3.64715 3.68563 3.82802 3.86704 3.91434 3.99793 4.06800 4.10673 4.45059 4.46442 4.58330 4.61239 4.71072 4.71978 4.75206 4.78417 4.86133 4.87105 4.88929 4.93924 4.99813 5.04601 5.10322 5.11625 5.13988 5.17994 5.26589 5.33820 5.44874 5.50199 5.61567 5.62840 5.73564 6.35895 6.38559 6.62853 7.13399 7.14689 7.84221 8.37441 9.18227 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.003298 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.259636 B = 8487.200032 C = 9983.108324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.183 3.817 3 N -0.692 5.692 4 C 0.601 3.399 5 O -0.557 6.557 6 C -0.102 4.102 7 C 0.025 3.975 8 O -0.190 6.190 9 C 0.211 3.789 10 C -0.033 4.033 11 C -0.132 4.132 12 C -0.126 4.126 13 C -0.125 4.125 14 N -0.490 5.490 15 C -0.130 4.130 16 C 0.153 3.847 17 N -0.605 5.605 18 C -0.268 4.268 19 H 0.063 0.937 20 C -0.047 4.047 21 N -0.931 5.931 22 Si 0.968 3.032 23 H -0.277 1.277 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.181 3.819 27 C -0.132 4.132 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.405 0.595 32 H 0.260 0.740 33 H 0.132 0.868 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.045 0.955 43 H -0.003 1.003 44 H 0.251 0.749 45 H 0.058 0.942 46 H -0.002 1.002 47 H 0.075 0.925 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.993 19.445 2.814 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.098 3.902 3 N -0.341 5.341 4 C 0.387 3.613 5 O -0.438 6.438 6 C -0.221 4.221 7 C -0.049 4.049 8 O -0.076 6.076 9 C 0.002 3.998 10 C -0.052 4.052 11 C -0.170 4.170 12 C -0.163 4.163 13 C -0.163 4.163 14 N -0.219 5.219 15 C -0.170 4.170 16 C 0.027 3.973 17 N -0.329 5.329 18 C -0.398 4.398 19 H 0.080 0.920 20 C -0.242 4.242 21 N -0.577 5.577 22 Si 0.796 3.204 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.055 3.945 27 C -0.171 4.171 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.241 0.759 32 H 0.276 0.724 33 H 0.150 0.850 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.015 0.985 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.016 0.984 47 H 0.094 0.906 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.129 18.838 2.767 21.116 hybrid contribution 0.850 -0.735 0.071 1.126 sum -8.279 18.103 2.838 20.107 Atomic orbital electron populations 1.22117 0.92927 1.03072 1.02638 1.20326 0.94314 0.79713 0.95824 1.46001 1.51887 1.11718 1.24534 1.16909 0.79391 0.82991 0.81998 1.90701 1.39854 1.76608 1.36600 1.21907 1.06045 0.97461 0.96643 1.25777 0.96645 0.81830 1.00631 1.84352 1.51159 1.36817 1.35242 1.26758 0.96304 0.92464 0.84282 1.21671 0.95998 0.90079 0.97457 1.23050 1.00379 0.94937 0.98614 1.22791 0.96705 0.97548 0.99280 1.23024 0.98085 0.92315 1.02855 1.70793 1.15755 1.07179 1.28176 1.22249 0.96240 1.00268 0.98217 1.20839 0.93121 0.94656 0.88671 1.44264 1.48364 1.39486 1.00754 1.19460 1.10436 1.03592 1.06298 0.91977 1.25764 0.98190 1.00438 0.99840 1.70175 1.38440 1.30717 1.18332 0.85342 0.78051 0.80053 0.76972 1.20305 1.21794 1.20473 1.20545 0.89791 0.95168 0.89003 1.22332 0.97778 1.00712 0.96272 0.91995 0.90568 0.91620 0.75917 0.72417 0.85003 0.89427 0.89937 0.88347 0.89352 0.89502 0.89576 0.90674 0.91212 0.93691 0.98521 0.94032 0.92323 0.98382 0.90620 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.40 8.40 71.98 0.60 -3.80 16 2 C 0.18 6.42 0.66 3.63 0.00 6.43 16 3 N -0.69 -24.66 4.09 -426.03 -1.74 -26.40 16 4 C 0.60 20.90 7.23 86.66 0.63 21.53 16 5 O -0.56 -20.30 13.10 -4.07 -0.05 -20.36 16 6 C -0.10 -3.15 6.99 40.41 0.28 -2.87 16 7 C 0.03 0.60 11.94 67.32 0.80 1.40 16 8 O -0.19 -4.28 10.39 0.49 0.01 -4.28 16 9 C 0.21 5.21 7.33 88.39 0.65 5.86 16 10 C -0.03 -0.57 4.29 -11.01 -0.05 -0.62 16 11 C -0.13 -1.73 7.62 31.12 0.24 -1.49 16 12 C -0.13 -1.15 8.08 31.12 0.25 -0.90 16 13 C -0.12 -1.52 7.63 31.12 0.24 -1.28 16 14 N -0.49 -15.31 11.06 -293.03 -3.24 -18.55 16 15 C -0.13 -5.00 4.67 30.67 0.14 -4.86 16 16 C 0.15 7.04 6.26 86.36 0.54 7.58 16 17 N -0.61 -31.48 2.99 -699.08 -2.09 -33.58 16 18 C -0.27 -15.16 9.59 84.03 0.81 -14.36 16 19 H 0.06 3.46 7.89 -2.91 -0.02 3.44 16 20 C -0.05 -2.64 4.91 84.86 0.42 -2.22 16 21 N -0.93 -55.30 11.19 21.65 0.24 -55.05 16 22 Si 0.97 45.39 29.59 68.60 2.03 47.42 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 C 0.18 8.73 5.03 86.36 0.43 9.16 16 27 C -0.13 -4.92 4.96 30.67 0.15 -4.76 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 2.07 6.17 -2.39 -0.01 2.05 16 31 H 0.41 15.10 7.00 -92.71 -0.65 14.45 16 32 H 0.26 4.20 8.06 -2.91 -0.02 4.17 16 33 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.09 1.18 7.81 -2.39 -0.02 1.17 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.09 0.94 8.14 -2.38 -0.02 0.93 16 39 H 0.09 1.07 8.09 -2.39 -0.02 1.06 16 40 H 0.07 2.88 6.20 -2.39 -0.01 2.87 16 41 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.04 2.07 7.93 -2.39 -0.02 2.05 16 43 H 0.00 -0.15 7.74 -2.39 -0.02 -0.17 16 44 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 45 H 0.06 3.19 6.03 -2.39 -0.01 3.18 16 46 H 0.00 -0.09 6.94 -2.38 -0.02 -0.11 16 47 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 48 H 0.08 2.55 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -69.62 378.93 1.61 -68.01 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.32 Total: 28.00 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 6.14 Total: 14.80 kcal Atomic # 7 Polarization: -126.75 SS G_CDS: -6.84 Total: -133.59 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.05 Total: -24.63 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -69.62 1.61 -68.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045616082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.395 kcal (2) G-P(sol) polarization free energy of solvation -69.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds