Wall clock time and date at job start Tue Mar 31 2020 17:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38353 * 119.45983 * 2 1 4 4 C 1.38359 * 119.30167 * 180.27753 * 3 2 1 5 5 C 1.50701 * 120.85704 * 179.70470 * 4 3 2 6 6 C 1.40021 * 118.28977 * 359.46021 * 4 3 2 7 7 C 1.47839 * 120.56252 * 180.28614 * 6 4 3 8 8 O 1.21551 * 119.99934 * 270.23314 * 7 6 4 9 9 N 1.34779 * 119.99938 * 90.23540 * 7 6 4 10 10 C 1.46494 * 120.00116 * 359.97438 * 9 7 6 11 11 C 1.46499 * 119.99652 * 180.02562 * 9 7 6 12 12 H 1.08997 * 110.89106 * 0.69870 * 11 9 7 13 13 C 1.54917 * 111.00435 * 124.58160 * 11 9 7 14 14 N 1.47427 * 104.82972 * 155.08175 * 13 11 9 15 15 C 1.36940 * 125.64218 * 155.83710 * 14 13 11 16 16 H 1.07993 * 120.00245 * 353.85071 * 15 14 13 17 17 C 1.38813 * 119.99431 * 173.84654 * 15 14 13 18 18 N 1.31620 * 119.99963 * 6.81575 * 17 15 14 19 19 Si 1.86801 * 119.99874 * 186.80489 * 17 15 14 20 20 H 1.48505 * 109.46852 * 94.99065 * 19 17 15 21 21 H 1.48494 * 109.47389 * 214.98870 * 19 17 15 22 22 H 1.48499 * 109.47126 * 334.99263 * 19 17 15 23 23 C 1.47016 * 108.70366 * 335.86823 * 14 13 11 24 24 C 1.54370 * 107.29358 * 1.09452 * 23 14 13 25 25 H 1.09000 * 110.70471 * 263.79539 * 24 23 14 26 26 O 1.42899 * 110.75887 * 140.50232 * 24 23 14 27 27 C 1.39528 * 118.87984 * 0.51567 * 6 4 3 28 28 C 1.50703 * 119.71776 * 179.72534 * 27 6 4 29 29 N 1.31694 * 120.56369 * 359.75053 * 27 6 4 30 30 H 1.08999 * 109.46908 * 90.00002 * 1 2 3 31 31 H 1.08998 * 109.47133 * 210.00153 * 1 2 3 32 32 H 1.09001 * 109.46577 * 329.99831 * 1 2 3 33 33 H 1.07993 * 120.34954 * 0.02562 * 3 2 1 34 34 H 1.08990 * 109.47365 * 89.99577 * 5 4 3 35 35 H 1.09000 * 109.46976 * 210.00083 * 5 4 3 36 36 H 1.09000 * 109.46961 * 329.99490 * 5 4 3 37 37 H 1.08994 * 109.47158 * 90.00099 * 10 9 7 38 38 H 1.09003 * 109.47043 * 210.00392 * 10 9 7 39 39 H 1.08998 * 109.47142 * 330.00013 * 10 9 7 40 40 H 1.08996 * 110.36414 * 273.91747 * 13 11 9 41 41 H 1.08990 * 110.36636 * 36.13075 * 13 11 9 42 42 H 0.97004 * 119.99689 * 179.97438 * 18 17 15 43 43 H 1.09007 * 109.88209 * 120.48263 * 23 14 13 44 44 H 1.08999 * 109.88231 * 241.64666 * 23 14 13 45 45 H 0.96703 * 113.99177 * 66.48547 * 26 24 23 46 46 H 1.08998 * 109.47196 * 270.02408 * 28 27 6 47 47 H 1.09005 * 109.46701 * 30.02250 * 28 27 6 48 48 H 1.08992 * 109.47160 * 150.02072 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 -0.0058 5 6 4.3475 2.4924 -0.0127 6 6 4.2313 -0.0339 0.0000 7 6 5.7083 -0.0966 0.0006 8 8 6.3159 -0.1230 -1.0519 9 7 6.3812 -0.1245 1.1680 10 6 5.6490 -0.0921 2.4365 11 6 7.8449 -0.1860 1.1685 12 1 8.2340 -0.1903 0.1504 13 6 8.4495 0.9806 1.9891 14 7 9.7719 0.4926 2.4210 15 6 10.8430 1.2784 2.7533 16 1 10.7912 2.3483 2.6154 17 6 11.9953 0.6998 3.2673 18 7 12.1107 -0.6106 3.3105 19 14 13.3823 1.7809 3.8974 20 1 13.2427 1.9599 5.3650 21 1 14.6866 1.1368 3.5991 22 1 13.3200 3.1055 3.2290 23 6 9.7503 -0.9773 2.4353 24 6 8.3494 -1.4204 1.9619 25 1 7.7006 -1.6224 2.8142 26 8 8.4406 -2.5651 1.1115 27 6 3.4716 -1.2043 0.0005 28 6 4.1627 -2.5435 0.0005 29 7 2.1558 -1.1486 0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 1.6444 2.1381 0.0004 34 1 4.5390 2.8067 1.0132 35 1 5.2953 2.3438 -0.5302 36 1 3.7698 3.2609 -0.5263 37 1 5.4235 -1.1108 2.7519 38 1 6.2593 0.3967 3.1959 39 1 4.7195 0.4618 2.3054 40 1 8.5578 1.8674 1.3647 41 1 7.8234 1.2005 2.8538 42 1 12.9161 -1.0150 3.6694 43 1 10.5101 -1.3658 1.7570 44 1 9.9324 -1.3410 3.4465 45 1 8.7515 -3.3639 1.5594 46 1 4.3294 -2.8664 -1.0271 47 1 5.1202 -2.4582 0.5144 48 1 3.5385 -3.2745 0.5143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047464503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:30 Heat of formation + Delta-G solvation = -19.221960 kcal Electronic energy + Delta-G solvation = -29895.887121 eV Core-core repulsion = 25951.744434 eV Total energy + Delta-G solvation = -3944.142688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.09181 -39.46966 -37.79458 -35.24370 -34.81497 -34.40221 -33.86844 -31.88578 -29.44074 -28.76189 -28.02578 -27.57982 -27.28267 -26.47911 -24.42390 -22.68114 -21.37419 -20.60331 -20.42699 -19.08349 -17.58802 -17.26439 -17.11456 -16.65919 -16.09746 -15.27117 -15.09009 -14.79587 -14.65719 -14.39663 -14.08210 -13.73095 -13.57528 -13.41039 -13.19212 -13.13549 -13.07592 -12.79323 -12.62521 -12.46795 -12.44144 -12.20197 -12.11743 -12.04034 -11.92785 -11.84381 -11.47600 -11.26840 -10.89444 -10.84990 -10.22369 -10.10627 -9.99310 -9.85369 -9.68438 -9.51458 -9.29159 -8.92975 -8.73752 -8.42281 -6.95401 -5.81474 -3.16062 0.72031 0.99891 2.60768 3.00839 3.35733 3.41124 3.43225 3.43982 3.93920 4.32699 4.35071 4.40471 4.48036 4.67534 4.83165 5.07502 5.10417 5.16425 5.18042 5.21034 5.27730 5.32237 5.36749 5.38322 5.41912 5.47559 5.53468 5.58559 5.61387 5.64280 5.72230 5.79833 5.82769 5.91688 5.96751 6.01395 6.04219 6.10458 6.42247 6.45043 6.52991 6.82147 7.32759 7.41321 7.48231 7.69936 7.76888 8.12238 8.16289 8.22157 9.09737 9.70096 10.33362 11.30206 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022729 B = 0.002971 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.628754 B = 9422.041044 C =10105.034481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.143 3.857 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.125 4.125 6 C -0.177 4.177 7 C 0.572 3.428 8 O -0.526 6.526 9 N -0.591 5.591 10 C 0.073 3.927 11 C 0.132 3.868 12 H 0.116 0.884 13 C 0.132 3.868 14 N -0.598 5.598 15 C -0.232 4.232 16 H 0.081 0.919 17 C -0.005 4.005 18 N -0.920 5.920 19 Si 0.914 3.086 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.152 3.848 24 C 0.066 3.934 25 H 0.056 0.944 26 O -0.560 6.560 27 C 0.174 3.826 28 C -0.110 4.110 29 N -0.489 5.489 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.139 0.861 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.027 0.973 42 H 0.254 0.746 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.374 0.626 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.050 0.600 -2.560 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.006 3.994 3 C -0.203 4.203 4 C -0.010 4.010 5 C -0.182 4.182 6 C -0.182 4.182 7 C 0.358 3.642 8 O -0.402 6.402 9 N -0.323 5.323 10 C -0.070 4.070 11 C 0.029 3.971 12 H 0.134 0.866 13 C 0.005 3.995 14 N -0.326 5.326 15 C -0.360 4.360 16 H 0.099 0.901 17 C -0.201 4.201 18 N -0.567 5.567 19 Si 0.744 3.256 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.027 3.973 24 C 0.006 3.994 25 H 0.074 0.926 26 O -0.365 6.365 27 C 0.036 3.964 28 C -0.168 4.168 29 N -0.200 5.200 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.221 0.779 46 H 0.103 0.897 47 H 0.099 0.901 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.173 0.216 -3.483 22.446 hybrid contribution 1.414 0.892 0.895 1.896 sum -20.759 1.109 -2.588 20.949 Atomic orbital electron populations 1.20736 0.88596 1.03574 1.03209 1.21386 0.97053 0.88117 0.92892 1.21723 0.93583 0.99452 1.05577 1.20324 0.93774 0.94465 0.92475 1.20940 1.00473 0.93249 1.03510 1.20660 0.94587 0.94611 1.08334 1.17985 0.86140 0.76177 0.83894 1.90813 1.69097 1.49358 1.30941 1.47719 1.06878 1.72048 1.05662 1.21825 0.96863 1.01950 0.86368 1.22452 0.77025 0.95141 1.02516 0.86622 1.21773 0.88095 0.94396 0.95275 1.44230 1.07504 1.01570 1.79286 1.19067 0.91342 0.90059 1.35557 0.90130 1.24843 0.98296 0.95987 1.01014 1.69951 1.27985 1.08064 1.50650 0.86070 0.81398 0.79338 0.78792 1.21531 1.21670 1.20525 1.21856 0.90547 0.84515 1.00408 1.23538 0.98851 0.85581 0.91459 0.92604 1.86496 1.89794 1.20456 1.39746 1.21296 0.88775 0.94670 0.91677 1.20826 1.00046 0.91989 1.03903 1.67370 1.08804 1.29104 1.14678 0.90242 0.90316 0.90576 0.84366 0.89805 0.90419 0.90399 0.92576 0.89742 0.91537 0.93373 0.95547 0.93591 0.92500 0.93073 0.77943 0.89725 0.90140 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.16 36.01 0.37 -0.34 16 2 C 0.14 1.49 6.78 -82.51 -0.56 0.93 16 3 C -0.18 -1.79 9.43 -39.49 -0.37 -2.16 16 4 C 0.00 -0.03 5.54 -103.91 -0.58 -0.60 16 5 C -0.13 -1.28 9.68 36.01 0.35 -0.93 16 6 C -0.18 -2.46 3.92 -104.82 -0.41 -2.87 16 7 C 0.57 9.43 4.21 -12.33 -0.05 9.38 16 8 O -0.53 -10.75 16.48 5.32 0.09 -10.66 16 9 N -0.59 -9.23 2.91 -172.59 -0.50 -9.73 16 10 C 0.07 0.90 9.09 59.84 0.54 1.44 16 11 C 0.13 2.50 3.18 -65.77 -0.21 2.29 16 12 H 0.12 2.55 7.01 -51.93 -0.36 2.18 16 13 C 0.13 2.66 6.80 -2.52 -0.02 2.65 16 14 N -0.60 -14.89 3.39 -170.05 -0.58 -15.47 16 15 C -0.23 -6.33 10.26 -15.06 -0.15 -6.48 16 16 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 17 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 18 N -0.92 -26.34 10.36 55.49 0.58 -25.77 16 19 Si 0.91 21.68 29.56 -169.99 -5.02 16.65 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.15 3.58 5.16 -3.04 -0.02 3.57 16 24 C 0.07 1.24 3.91 -24.87 -0.10 1.15 16 25 H 0.06 0.95 7.17 -51.93 -0.37 0.58 16 26 O -0.56 -10.13 13.39 -35.23 -0.47 -10.60 16 27 C 0.17 2.34 6.82 -82.17 -0.56 1.78 16 28 C -0.11 -1.36 9.79 36.01 0.35 -1.01 16 29 N -0.49 -6.20 10.17 -5.42 -0.06 -6.25 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.98 7.20 -51.93 -0.37 0.60 16 36 H 0.08 0.62 8.10 -51.93 -0.42 0.19 16 37 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 38 H 0.08 1.03 6.10 -51.93 -0.32 0.72 16 39 H 0.07 0.72 6.56 -51.93 -0.34 0.38 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.03 0.50 6.09 -51.93 -0.32 0.19 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.06 1.52 7.46 -51.93 -0.39 1.13 16 44 H 0.05 1.30 7.36 -51.93 -0.38 0.92 16 45 H 0.37 5.18 9.12 45.56 0.42 5.59 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.08 1.08 7.07 -51.93 -0.37 0.72 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -33.85 386.26 -8.23 -42.08 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.57 Total: 5.36 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -1.51 Total: 8.57 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.56 Total: -57.21 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.38 Total: -21.27 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.85 -8.23 -42.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047464503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.857 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds