Wall clock time and date at job start Tue Mar 31 2020 17:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38353 * 119.45983 * 2 1 4 4 C 1.38359 * 119.30167 * 180.27753 * 3 2 1 5 5 C 1.50701 * 120.85704 * 179.70470 * 4 3 2 6 6 C 1.40021 * 118.28977 * 359.46021 * 4 3 2 7 7 C 1.47839 * 120.56252 * 180.28614 * 6 4 3 8 8 O 1.21551 * 119.99934 * 270.23314 * 7 6 4 9 9 N 1.34779 * 119.99938 * 90.23540 * 7 6 4 10 10 C 1.46494 * 120.00116 * 359.97438 * 9 7 6 11 11 C 1.46499 * 119.99652 * 180.02562 * 9 7 6 12 12 H 1.08997 * 110.89106 * 0.69870 * 11 9 7 13 13 C 1.54917 * 111.00435 * 124.58160 * 11 9 7 14 14 N 1.47427 * 104.82972 * 155.08175 * 13 11 9 15 15 C 1.36940 * 125.64218 * 155.83710 * 14 13 11 16 16 H 1.07993 * 120.00245 * 353.85071 * 15 14 13 17 17 C 1.38813 * 119.99431 * 173.84654 * 15 14 13 18 18 N 1.31620 * 119.99963 * 6.81575 * 17 15 14 19 19 Si 1.86801 * 119.99874 * 186.80489 * 17 15 14 20 20 H 1.48505 * 109.46852 * 94.99065 * 19 17 15 21 21 H 1.48494 * 109.47389 * 214.98870 * 19 17 15 22 22 H 1.48499 * 109.47126 * 334.99263 * 19 17 15 23 23 C 1.47016 * 108.70366 * 335.86823 * 14 13 11 24 24 C 1.54370 * 107.29358 * 1.09452 * 23 14 13 25 25 H 1.09000 * 110.70471 * 263.79539 * 24 23 14 26 26 O 1.42899 * 110.75887 * 140.50232 * 24 23 14 27 27 C 1.39528 * 118.87984 * 0.51567 * 6 4 3 28 28 C 1.50703 * 119.71776 * 179.72534 * 27 6 4 29 29 N 1.31694 * 120.56369 * 359.75053 * 27 6 4 30 30 H 1.08999 * 109.46908 * 90.00002 * 1 2 3 31 31 H 1.08998 * 109.47133 * 210.00153 * 1 2 3 32 32 H 1.09001 * 109.46577 * 329.99831 * 1 2 3 33 33 H 1.07993 * 120.34954 * 0.02562 * 3 2 1 34 34 H 1.08990 * 109.47365 * 89.99577 * 5 4 3 35 35 H 1.09000 * 109.46976 * 210.00083 * 5 4 3 36 36 H 1.09000 * 109.46961 * 329.99490 * 5 4 3 37 37 H 1.08994 * 109.47158 * 90.00099 * 10 9 7 38 38 H 1.09003 * 109.47043 * 210.00392 * 10 9 7 39 39 H 1.08998 * 109.47142 * 330.00013 * 10 9 7 40 40 H 1.08996 * 110.36414 * 273.91747 * 13 11 9 41 41 H 1.08990 * 110.36636 * 36.13075 * 13 11 9 42 42 H 0.97004 * 119.99689 * 179.97438 * 18 17 15 43 43 H 1.09007 * 109.88209 * 120.48263 * 23 14 13 44 44 H 1.08999 * 109.88231 * 241.64666 * 23 14 13 45 45 H 0.96703 * 113.99177 * 66.48547 * 26 24 23 46 46 H 1.08998 * 109.47196 * 270.02408 * 28 27 6 47 47 H 1.09005 * 109.46701 * 30.02250 * 28 27 6 48 48 H 1.08992 * 109.47160 * 150.02072 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 -0.0058 5 6 4.3475 2.4924 -0.0127 6 6 4.2313 -0.0339 0.0000 7 6 5.7083 -0.0966 0.0006 8 8 6.3159 -0.1230 -1.0519 9 7 6.3812 -0.1245 1.1680 10 6 5.6490 -0.0921 2.4365 11 6 7.8449 -0.1860 1.1685 12 1 8.2340 -0.1903 0.1504 13 6 8.4495 0.9806 1.9891 14 7 9.7719 0.4926 2.4210 15 6 10.8430 1.2784 2.7533 16 1 10.7912 2.3483 2.6154 17 6 11.9953 0.6998 3.2673 18 7 12.1107 -0.6106 3.3105 19 14 13.3823 1.7809 3.8974 20 1 13.2427 1.9599 5.3650 21 1 14.6866 1.1368 3.5991 22 1 13.3200 3.1055 3.2290 23 6 9.7503 -0.9773 2.4353 24 6 8.3494 -1.4204 1.9619 25 1 7.7006 -1.6224 2.8142 26 8 8.4406 -2.5651 1.1115 27 6 3.4716 -1.2043 0.0005 28 6 4.1627 -2.5435 0.0005 29 7 2.1558 -1.1486 0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 1.6444 2.1381 0.0004 34 1 4.5390 2.8067 1.0132 35 1 5.2953 2.3438 -0.5302 36 1 3.7698 3.2609 -0.5263 37 1 5.4235 -1.1108 2.7519 38 1 6.2593 0.3967 3.1959 39 1 4.7195 0.4618 2.3054 40 1 8.5578 1.8674 1.3647 41 1 7.8234 1.2005 2.8538 42 1 12.9161 -1.0150 3.6694 43 1 10.5101 -1.3658 1.7570 44 1 9.9324 -1.3410 3.4465 45 1 8.7515 -3.3639 1.5594 46 1 4.3294 -2.8664 -1.0271 47 1 5.1202 -2.4582 0.5144 48 1 3.5385 -3.2745 0.5143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047464503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:29 Heat of formation + Delta-G solvation = -43.767442 kcal Electronic energy + Delta-G solvation = -29896.951493 eV Core-core repulsion = 25951.744434 eV Total energy + Delta-G solvation = -3945.207060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.12859 -40.72520 -39.32535 -36.75497 -36.38998 -35.28697 -34.78547 -33.74910 -30.63955 -30.05522 -29.23696 -28.78089 -28.30825 -27.76194 -26.23343 -23.73827 -22.37282 -22.28221 -21.73393 -20.43009 -19.04126 -18.89535 -18.20309 -17.98509 -17.62684 -16.74300 -16.11918 -15.95512 -15.85923 -15.82182 -15.57812 -15.01084 -14.59217 -14.44841 -14.41459 -14.23817 -14.12421 -14.02770 -13.91163 -13.70980 -13.63211 -13.25803 -13.18638 -13.18004 -13.05528 -12.98508 -12.74624 -12.70718 -12.66684 -12.66153 -12.07557 -11.89383 -11.59581 -11.37249 -10.96158 -10.76106 -10.55890 -10.44083 -9.82295 -9.80311 -8.96454 -7.90180 -5.27320 -0.17032 0.13956 1.34485 1.46506 1.47869 1.56935 1.74952 2.46956 2.56235 3.07930 3.12971 3.31043 3.36329 3.53582 3.55731 3.61056 3.79816 4.01146 4.05229 4.06798 4.17545 4.29412 4.32825 4.41641 4.44819 4.48419 4.52445 4.55272 4.55879 4.62124 4.68179 4.73306 4.84147 4.84271 4.95611 4.98638 5.05320 5.14333 5.17971 5.22663 5.37286 5.40194 5.42092 5.64069 5.66158 6.11354 6.20992 6.83064 6.89031 6.95518 7.02589 7.67598 8.30690 9.20051 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022729 B = 0.002971 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.628754 B = 9422.041044 C =10105.034481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.139 3.861 3 C -0.172 4.172 4 C -0.008 4.008 5 C -0.123 4.123 6 C -0.198 4.198 7 C 0.577 3.423 8 O -0.577 6.577 9 N -0.586 5.586 10 C 0.070 3.930 11 C 0.145 3.855 12 H 0.079 0.921 13 C 0.135 3.865 14 N -0.620 5.620 15 C -0.246 4.246 16 H 0.086 0.914 17 C -0.061 4.061 18 N -0.948 5.948 19 Si 0.981 3.019 20 H -0.283 1.283 21 H -0.296 1.296 22 H -0.268 1.268 23 C 0.164 3.836 24 C 0.086 3.914 25 H 0.086 0.914 26 O -0.570 6.570 27 C 0.163 3.837 28 C -0.107 4.107 29 N -0.505 5.505 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.177 0.823 34 H 0.097 0.903 35 H 0.045 0.955 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.249 0.751 43 H 0.014 0.986 44 H 0.029 0.971 45 H 0.393 0.607 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.270 2.151 -1.549 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.002 3.998 3 C -0.192 4.192 4 C -0.016 4.016 5 C -0.179 4.179 6 C -0.203 4.203 7 C 0.365 3.635 8 O -0.456 6.456 9 N -0.316 5.316 10 C -0.071 4.071 11 C 0.040 3.960 12 H 0.097 0.903 13 C 0.009 3.991 14 N -0.348 5.348 15 C -0.375 4.375 16 H 0.104 0.896 17 C -0.255 4.255 18 N -0.596 5.596 19 Si 0.808 3.192 20 H -0.209 1.209 21 H -0.223 1.223 22 H -0.193 1.193 23 C 0.038 3.962 24 C 0.025 3.975 25 H 0.103 0.897 26 O -0.377 6.377 27 C 0.025 3.975 28 C -0.164 4.164 29 N -0.216 5.216 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.194 0.806 34 H 0.116 0.884 35 H 0.065 0.935 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.032 0.968 44 H 0.047 0.953 45 H 0.242 0.758 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.442 1.770 -2.448 25.620 hybrid contribution 2.304 0.424 0.529 2.402 sum -23.137 2.193 -1.920 23.320 Atomic orbital electron populations 1.20862 0.85820 1.04916 1.04266 1.22098 0.98861 0.87749 0.91103 1.22096 0.92615 1.00822 1.03639 1.20578 0.94883 0.93969 0.92138 1.20966 0.99231 0.93423 1.04299 1.20483 0.92511 0.96094 1.11232 1.18405 0.87311 0.74664 0.83090 1.90779 1.70439 1.51650 1.32755 1.47678 1.05387 1.71517 1.07016 1.22046 0.97268 1.03293 0.84539 1.21962 0.79252 0.94708 1.00096 0.90323 1.21879 0.86608 0.94554 0.96092 1.44495 1.08762 1.02135 1.79371 1.19451 0.92271 0.90697 1.35059 0.89631 1.25687 1.00821 0.97274 1.01679 1.70158 1.28320 1.09583 1.51567 0.85034 0.77910 0.77975 0.78237 1.20928 1.22320 1.19303 1.21601 0.92366 0.84116 0.98118 1.23292 0.96208 0.85790 0.92182 0.89651 1.86470 1.89763 1.21123 1.40389 1.21338 0.89329 0.94574 0.92275 1.20771 0.99620 0.92504 1.03483 1.67436 1.08198 1.30500 1.15473 0.89135 0.90462 0.87803 0.80588 0.88432 0.93543 0.87701 0.91210 0.89302 0.89592 0.93798 0.92772 0.94177 0.96800 0.95322 0.75767 0.90429 0.91601 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.16 71.24 0.72 -0.24 16 2 C 0.14 2.44 6.78 42.57 0.29 2.73 16 3 C -0.17 -2.69 9.43 22.33 0.21 -2.48 16 4 C -0.01 -0.16 5.54 -19.40 -0.11 -0.27 16 5 C -0.12 -2.24 9.68 71.24 0.69 -1.55 16 6 C -0.20 -5.34 3.92 -19.99 -0.08 -5.42 16 7 C 0.58 19.27 4.21 86.78 0.37 19.64 16 8 O -0.58 -24.71 16.48 -3.88 -0.06 -24.78 16 9 N -0.59 -18.07 2.91 -818.24 -2.38 -20.45 16 10 C 0.07 1.57 9.09 127.77 1.16 2.74 16 11 C 0.15 5.57 3.18 46.39 0.15 5.72 16 12 H 0.08 3.66 7.01 -2.39 -0.02 3.64 16 13 C 0.13 5.46 6.80 86.86 0.59 6.05 16 14 N -0.62 -31.54 3.39 -691.90 -2.35 -33.89 16 15 C -0.25 -13.62 10.26 84.03 0.86 -12.76 16 16 H 0.09 4.51 7.84 -2.91 -0.02 4.49 16 17 C -0.06 -3.43 5.48 84.86 0.47 -2.97 16 18 N -0.95 -56.08 10.36 21.65 0.22 -55.86 16 19 Si 0.98 45.08 29.56 68.60 2.03 47.11 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 22 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 23 C 0.16 8.00 5.16 86.75 0.45 8.45 16 24 C 0.09 3.25 3.91 31.80 0.12 3.38 16 25 H 0.09 2.77 7.17 -2.39 -0.02 2.75 16 26 O -0.57 -20.93 13.39 -148.98 -1.99 -22.93 16 27 C 0.16 4.22 6.82 42.89 0.29 4.51 16 28 C -0.11 -2.61 9.79 71.24 0.70 -1.92 16 29 N -0.50 -11.80 10.17 -171.05 -1.74 -13.54 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 0.44 8.07 -2.39 -0.02 0.42 16 33 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.15 7.20 -2.39 -0.02 1.14 16 36 H 0.10 1.31 8.10 -2.39 -0.02 1.29 16 37 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 38 H 0.09 1.93 6.10 -2.39 -0.01 1.92 16 39 H 0.09 1.63 6.56 -2.39 -0.02 1.62 16 40 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.05 1.94 6.09 -2.39 -0.01 1.93 16 42 H 0.25 14.31 8.31 -92.71 -0.77 13.53 16 43 H 0.01 0.78 7.46 -2.38 -0.02 0.76 16 44 H 0.03 1.51 7.36 -2.39 -0.02 1.49 16 45 H 0.39 10.91 9.12 -74.06 -0.68 10.24 16 46 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.07 1.78 7.07 -2.38 -0.02 1.76 16 48 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -77.32 386.26 0.91 -76.41 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.31 Total: 22.32 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 6.88 Total: 25.61 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -6.24 Total: -123.74 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -2.06 Total: -47.70 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -77.32 0.91 -76.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047464503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.640 kcal (2) G-P(sol) polarization free energy of solvation -77.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds