Wall clock time and date at job start Tue Mar 31 2020 17:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38353 * 119.45928 * 2 1 4 4 C 1.38359 * 119.30640 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.85863 * 179.97438 * 4 3 2 6 6 C 1.40027 * 118.28565 * 359.97438 * 4 3 2 7 7 C 1.47833 * 120.55750 * 180.02562 * 6 4 3 8 8 O 1.21554 * 120.00515 * 94.58599 * 7 6 4 9 9 N 1.34786 * 120.00130 * 274.58443 * 7 6 4 10 10 C 1.46498 * 119.99982 * 184.44200 * 9 7 6 11 11 C 1.53004 * 109.46739 * 174.82369 * 10 9 7 12 12 H 1.08997 * 109.67874 * 54.79272 * 11 10 9 13 13 C 1.53293 * 109.67840 * 294.27099 * 11 10 9 14 14 O 1.42965 * 109.22307 * 187.97481 * 13 11 10 15 15 C 1.42956 * 114.16523 * 62.58131 * 14 13 11 16 16 C 1.53301 * 109.22593 * 297.42262 * 15 14 13 17 17 N 1.47148 * 109.67868 * 175.31325 * 11 10 9 18 18 C 1.36939 * 120.98298 * 350.22891 * 17 11 10 19 19 H 1.07997 * 120.00207 * 31.88162 * 18 17 11 20 20 C 1.38814 * 119.99817 * 211.88570 * 18 17 11 21 21 N 1.31622 * 120.00366 * 8.73183 * 20 18 17 22 22 Si 1.86799 * 119.99826 * 188.73800 * 20 18 17 23 23 H 1.48511 * 109.47109 * 94.99229 * 22 20 18 24 24 H 1.48498 * 109.47330 * 214.99256 * 22 20 18 25 25 H 1.48495 * 109.47149 * 334.99156 * 22 20 18 26 26 C 1.39525 * 118.88116 * 0.02562 * 6 4 3 27 27 C 1.50703 * 119.71334 * 180.02562 * 26 6 4 28 28 N 1.31690 * 120.56916 * 359.97438 * 26 6 4 29 29 H 1.09007 * 109.47191 * 90.00912 * 1 2 3 30 30 H 1.09001 * 109.47226 * 210.00212 * 1 2 3 31 31 H 1.08999 * 109.47793 * 330.00326 * 1 2 3 32 32 H 1.08001 * 120.34826 * 0.24713 * 3 2 1 33 33 H 1.08997 * 109.47458 * 85.49628 * 5 4 3 34 34 H 1.08997 * 109.47395 * 205.50253 * 5 4 3 35 35 H 1.09005 * 109.46705 * 325.49487 * 5 4 3 36 36 H 0.96994 * 119.99407 * 4.44726 * 9 7 6 37 37 H 1.09002 * 109.46840 * 294.81905 * 10 9 7 38 38 H 1.09001 * 109.47212 * 54.82358 * 10 9 7 39 39 H 1.08994 * 109.51799 * 307.90011 * 13 11 10 40 40 H 1.09006 * 109.51338 * 68.00601 * 13 11 10 41 41 H 1.09005 * 109.51077 * 57.34191 * 15 14 13 42 42 H 1.09000 * 109.51851 * 177.49538 * 15 14 13 43 43 H 1.09003 * 109.68085 * 172.02240 * 16 15 14 44 44 H 1.08998 * 109.68227 * 292.57741 * 16 15 14 45 45 H 0.97000 * 119.99933 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.46941 * 89.99960 * 27 26 6 47 47 H 1.09003 * 109.46468 * 210.00094 * 27 26 6 48 48 H 1.09002 * 109.46904 * 329.99631 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2010 0.0005 5 6 4.3474 2.4925 0.0000 6 6 4.2312 -0.0339 0.0016 7 6 5.7082 -0.0964 0.0028 8 8 6.3112 -0.2057 1.0526 9 7 6.3864 -0.0323 -1.1602 10 6 7.8427 -0.1918 -1.1687 11 6 8.3456 -0.2065 -2.6137 12 1 8.0026 0.6896 -3.1308 13 6 7.8152 -1.4524 -3.3322 14 8 8.4362 -1.5556 -4.6158 15 6 9.8547 -1.7266 -4.5676 16 6 10.4897 -0.4948 -3.9122 17 7 9.8163 -0.2536 -2.6260 18 6 10.5369 -0.0785 -1.4748 19 1 10.1312 -0.4054 -0.5288 20 6 11.7887 0.5194 -1.5237 21 7 12.2110 1.0719 -2.6413 22 14 12.8740 0.5398 -0.0035 23 1 13.8128 -0.6100 -0.0501 24 1 13.6459 1.8078 0.0367 25 1 12.0263 0.4378 1.2113 26 6 3.4716 -1.2042 0.0016 27 6 4.1628 -2.5434 0.0033 28 7 2.1559 -1.1487 0.0010 29 1 -0.3634 -0.0002 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3635 0.8900 0.5138 32 1 1.6442 2.1381 0.0040 33 1 4.4650 2.8462 1.0242 34 1 5.3297 2.3258 -0.4420 35 1 3.8089 3.2398 -0.5829 36 1 5.9102 0.1196 -1.9915 37 1 8.3022 0.6385 -0.6325 38 1 8.1082 -1.1303 -0.6820 39 1 8.0478 -2.3393 -2.7429 40 1 6.7353 -1.3697 -3.4551 41 1 10.0947 -2.6145 -3.9826 42 1 10.2424 -1.8409 -5.5799 43 1 11.5512 -0.6752 -3.7427 44 1 10.3631 0.3723 -4.5605 45 1 13.0856 1.4900 -2.6753 46 1 4.3282 -2.8655 1.0313 47 1 3.5391 -3.2747 -0.5108 48 1 5.1209 -2.4584 -0.5096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051038306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:42 Heat of formation + Delta-G solvation = -31.414413 kcal Electronic energy + Delta-G solvation = -29392.710326 eV Core-core repulsion = 25448.038934 eV Total energy + Delta-G solvation = -3944.671392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.97597 -39.21434 -38.32984 -35.26694 -34.46063 -34.16267 -33.89105 -31.50753 -30.40441 -29.36359 -28.13109 -27.66851 -26.91411 -25.66398 -23.45511 -22.79348 -21.63188 -21.26941 -20.42916 -19.64213 -17.86090 -17.23304 -16.63317 -16.06642 -15.65288 -15.28888 -15.19936 -14.88466 -14.60561 -14.49942 -14.40111 -13.79891 -13.63151 -13.54528 -13.47430 -13.43718 -13.16433 -13.00987 -12.92223 -12.80081 -12.47677 -12.24369 -12.01037 -11.95591 -11.84072 -11.37933 -11.14261 -10.96267 -10.80467 -10.43086 -10.23297 -10.18945 -10.04821 -9.68149 -9.67171 -9.51523 -9.05921 -8.96124 -8.76762 -8.59297 -6.74355 -5.89338 -3.41278 0.70692 0.99559 2.63812 3.20660 3.32747 3.40371 3.42849 3.45812 3.94484 4.33458 4.35339 4.37573 4.48311 4.70337 4.82905 5.09827 5.16434 5.17802 5.22953 5.27708 5.28383 5.31722 5.36703 5.44330 5.48552 5.49635 5.59835 5.63117 5.75739 5.80535 5.90283 5.91870 5.94378 6.02128 6.10331 6.15504 6.28536 6.41319 6.44129 6.52123 6.64386 6.75708 7.06592 7.48523 7.59012 7.68832 7.75846 7.84382 8.27605 8.31376 9.06037 9.66289 10.24444 11.18000 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.003151 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.311009 B = 8884.963473 C = 9760.949631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.145 3.855 3 C -0.184 4.184 4 C 0.000 4.000 5 C -0.126 4.126 6 C -0.184 4.184 7 C 0.568 3.432 8 O -0.526 6.526 9 N -0.719 5.719 10 C 0.127 3.873 11 C 0.132 3.868 12 H 0.039 0.961 13 C 0.053 3.947 14 O -0.394 6.394 15 C 0.035 3.965 16 C 0.146 3.854 17 N -0.587 5.587 18 C -0.262 4.262 19 H 0.072 0.928 20 C 0.011 3.989 21 N -0.902 5.902 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.275 1.275 26 C 0.176 3.824 27 C -0.110 4.110 28 N -0.489 5.489 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.139 0.861 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.398 0.602 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.029 0.971 45 H 0.256 0.744 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.801 -1.265 1.132 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.007 3.993 3 C -0.204 4.204 4 C -0.008 4.008 5 C -0.182 4.182 6 C -0.190 4.190 7 C 0.352 3.648 8 O -0.402 6.402 9 N -0.371 5.371 10 C 0.005 3.995 11 C 0.024 3.976 12 H 0.056 0.944 13 C -0.026 4.026 14 O -0.313 6.313 15 C -0.043 4.043 16 C 0.020 3.980 17 N -0.312 5.312 18 C -0.391 4.391 19 H 0.090 0.910 20 C -0.189 4.189 21 N -0.545 5.545 22 Si 0.733 3.267 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.200 1.200 26 C 0.037 3.963 27 C -0.167 4.167 28 N -0.200 5.200 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.157 0.843 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.232 0.768 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.113 0.887 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.720 -2.022 1.699 19.897 hybrid contribution 1.087 1.043 0.562 1.608 sum -18.633 -0.979 2.261 18.795 Atomic orbital electron populations 1.20742 0.88575 1.03588 1.03255 1.21395 0.97074 0.88116 0.92697 1.21729 0.93657 0.99470 1.05565 1.20359 0.93802 0.94524 0.92155 1.20951 1.00285 0.93334 1.03652 1.20735 0.94700 0.94575 1.08942 1.17919 0.86006 0.76678 0.84233 1.90833 1.69452 1.48758 1.31167 1.46182 1.09300 1.72720 1.08850 1.21590 0.76544 1.03364 0.98013 1.21230 0.87922 0.95817 0.92623 0.94356 1.23025 0.95942 0.98164 0.85484 1.87784 1.21342 1.94170 1.27977 1.23373 0.80761 0.99743 1.00442 1.21440 0.98208 0.92602 0.85719 1.43956 0.97791 1.83865 1.05603 1.19174 0.99544 1.33508 0.86893 0.91045 1.25218 0.99653 0.96911 0.97101 1.69969 1.19729 1.39060 1.25760 0.86239 0.80544 0.77176 0.82692 1.21292 1.21564 1.20024 1.21279 0.88815 0.94628 0.91545 1.20816 0.99903 0.92117 1.03884 1.67371 1.08812 1.29113 1.14743 0.90149 0.90320 0.90579 0.84346 0.89777 0.90515 0.90267 0.76845 0.89674 0.90904 0.93606 0.90552 0.94058 0.90135 0.88715 0.95276 0.93416 0.89634 0.89848 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.16 36.00 0.37 -0.35 16 2 C 0.14 1.51 6.78 -82.51 -0.56 0.95 16 3 C -0.18 -1.80 9.44 -39.49 -0.37 -2.18 16 4 C 0.00 0.00 5.95 -103.91 -0.62 -0.62 16 5 C -0.13 -1.28 9.76 36.00 0.35 -0.93 16 6 C -0.18 -2.49 5.65 -104.82 -0.59 -3.08 16 7 C 0.57 8.90 4.30 -12.33 -0.05 8.85 16 8 O -0.53 -10.38 17.11 5.32 0.09 -10.29 16 9 N -0.72 -10.54 5.22 -61.25 -0.32 -10.86 16 10 C 0.13 2.33 3.87 -4.04 -0.02 2.31 16 11 C 0.13 2.57 3.17 -67.42 -0.21 2.36 16 12 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 13 C 0.05 0.91 6.07 37.31 0.23 1.14 16 14 O -0.39 -7.60 10.74 -35.23 -0.38 -7.98 16 15 C 0.03 0.67 6.99 37.31 0.26 0.93 16 16 C 0.15 3.37 5.37 -3.52 -0.02 3.35 16 17 N -0.59 -13.98 3.03 -164.29 -0.50 -14.48 16 18 C -0.26 -6.81 8.54 -15.06 -0.13 -6.94 16 19 H 0.07 1.84 6.39 -52.49 -0.34 1.51 16 20 C 0.01 0.29 5.10 -17.43 -0.09 0.20 16 21 N -0.90 -25.19 11.07 55.49 0.61 -24.57 16 22 Si 0.90 21.32 29.56 -169.99 -5.03 16.30 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.18 2.30 6.82 -82.17 -0.56 1.74 16 27 C -0.11 -1.27 9.79 36.01 0.35 -0.92 16 28 N -0.49 -6.16 10.17 -5.42 -0.06 -6.21 16 29 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.90 6.97 -51.93 -0.36 0.54 16 35 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 36 H 0.40 4.91 7.94 -40.82 -0.32 4.58 16 37 H 0.09 1.79 7.28 -51.93 -0.38 1.42 16 38 H 0.07 1.42 7.84 -51.93 -0.41 1.01 16 39 H 0.05 0.81 8.13 -51.93 -0.42 0.38 16 40 H 0.08 1.10 7.59 -51.93 -0.39 0.70 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.09 2.40 6.32 -51.93 -0.33 2.07 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.08 0.92 7.07 -51.93 -0.37 0.56 16 LS Contribution 387.37 15.07 5.84 5.84 Total: -1.00 -31.88 387.37 -8.92 -40.80 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.52 Total: 4.64 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -1.67 Total: 6.82 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.26 Total: -56.12 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.29 Total: -18.27 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.88 -8.92 -40.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051038306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.383 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds