Wall clock time and date at job start Tue Mar 31 2020 17:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35923 * 117.00311 * 2 1 4 4 C 1.38852 * 120.40232 * 0.02562 * 3 2 1 5 5 N 1.31881 * 120.99683 * 179.97438 * 4 3 2 6 6 C 1.31679 * 121.94513 * 359.69587 * 5 4 3 7 7 C 1.39530 * 120.68796 * 0.59432 * 6 5 4 8 8 C 1.47849 * 120.53303 * 179.70323 * 7 6 5 9 9 O 1.21547 * 120.00195 * 174.07929 * 8 7 6 10 10 N 1.34775 * 119.99740 * 354.07348 * 8 7 6 11 11 C 1.46507 * 120.00009 * 180.02562 * 10 8 7 12 12 H 1.08990 * 109.20269 * 35.64174 * 11 10 8 13 13 C 1.50122 * 109.20705 * 155.00007 * 11 10 8 14 14 C 1.52522 * 105.41341 * 218.02909 * 13 11 10 15 15 C 1.46245 * 114.27737 * 270.59368 * 14 13 11 16 16 N 1.50165 * 107.58750 * 58.37533 * 15 14 13 17 17 C 1.36939 * 120.53729 * 109.60671 * 16 15 14 18 18 H 1.07994 * 120.00246 * 150.35521 * 17 16 15 19 19 C 1.38813 * 119.99683 * 330.35249 * 17 16 15 20 20 N 1.31617 * 120.00201 * 349.10247 * 19 17 16 21 21 Si 1.86802 * 119.99631 * 169.10416 * 19 17 16 22 22 H 1.48492 * 109.47427 * 90.00388 * 21 19 17 23 23 H 1.48508 * 109.46708 * 210.00009 * 21 19 17 24 24 H 1.48496 * 109.47357 * 329.99545 * 21 19 17 25 25 C 1.43413 * 118.94609 * 289.71040 * 16 15 14 26 26 C 1.54840 * 109.20769 * 276.32648 * 11 10 8 27 27 C 1.38838 * 120.40447 * 180.02562 * 3 2 1 28 28 C 1.50700 * 120.88395 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46781 * 299.99699 * 1 2 3 31 31 H 1.08994 * 109.46922 * 59.99789 * 1 2 3 32 32 H 1.08001 * 119.49913 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.65642 * 180.31485 * 6 5 4 34 34 H 0.97004 * 120.00227 * 0.02562 * 10 8 7 35 35 H 1.09004 * 110.25094 * 99.05999 * 13 11 10 36 36 H 1.08998 * 110.37400 * 337.06771 * 13 11 10 37 37 H 1.09002 * 108.52337 * 149.35912 * 14 13 11 38 38 H 1.08996 * 108.40492 * 31.74835 * 14 13 11 39 39 H 1.08999 * 109.84416 * 177.91756 * 15 14 13 40 40 H 1.09000 * 109.84668 * 298.83488 * 15 14 13 41 41 H 0.97001 * 120.00330 * 180.02562 * 20 19 17 42 42 H 1.09005 * 108.11927 * 329.72717 * 25 16 15 43 43 H 1.08998 * 107.96951 * 213.07036 * 25 16 15 44 44 H 1.09006 * 109.36039 * 320.99487 * 26 11 10 45 45 H 1.09004 * 109.35870 * 80.72013 * 26 11 10 46 46 H 1.08993 * 109.47072 * 263.13916 * 28 27 3 47 47 H 1.08997 * 109.46536 * 23.13880 * 28 27 3 48 48 H 1.09003 * 109.47172 * 143.13767 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8848 3.5621 0.0010 6 6 3.1954 3.6891 0.0070 7 6 4.0200 2.5636 0.0006 8 6 5.4912 2.7102 0.0007 9 8 6.1999 1.7281 0.1038 10 7 6.0465 3.9330 -0.1135 11 6 7.5043 4.0783 -0.1139 12 1 7.9493 3.2272 -0.6292 13 6 7.8745 5.3414 -0.8359 14 6 9.1409 5.0058 -1.6168 15 6 10.3818 5.2381 -0.8786 16 7 10.3306 4.4039 0.3689 17 6 11.1441 3.3113 0.5092 18 1 11.4734 3.0057 1.4913 19 6 11.5455 2.5965 -0.6110 20 7 10.9816 2.8294 -1.7772 21 14 12.8861 1.3040 -0.4632 22 1 12.2729 -0.0116 -0.1502 23 1 13.6281 1.2116 -1.7463 24 1 13.8231 1.6848 0.6241 25 6 9.4145 4.7682 1.4105 26 6 8.0135 4.1106 1.3480 27 6 3.4321 1.2934 -0.0005 28 6 4.2810 0.0483 -0.0005 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2198 2.3226 0.0005 33 1 3.6367 4.6748 0.0124 34 1 5.4809 4.7168 -0.1954 35 1 8.0726 6.1403 -0.1212 36 1 7.0773 5.6360 -1.5184 37 1 9.1591 5.6104 -2.5235 38 1 9.1001 3.9550 -1.9034 39 1 11.2357 4.9412 -1.4876 40 1 10.4640 6.2927 -0.6155 41 1 11.2618 2.3297 -2.5599 42 1 9.2835 5.8501 1.3835 43 1 9.8702 4.5071 2.3656 44 1 7.3175 4.6840 1.9605 45 1 8.0772 3.0921 1.7310 46 1 4.5875 -0.1825 1.0196 47 1 3.7047 -0.7843 -0.4040 48 1 5.1648 0.2111 -0.6174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052496420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:13 Heat of formation + Delta-G solvation = -4.223632 kcal Electronic energy + Delta-G solvation = -29543.503875 eV Core-core repulsion = 25600.011564 eV Total energy + Delta-G solvation = -3943.492311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.16278 -39.57367 -38.26532 -37.51596 -34.80591 -33.66231 -32.47239 -31.53860 -31.01269 -29.60718 -27.98024 -27.80850 -26.10855 -24.41286 -23.82757 -22.91309 -22.22384 -20.66774 -19.92142 -19.09625 -18.29085 -17.59199 -16.70211 -16.50203 -16.33326 -16.27330 -15.45743 -15.08051 -14.73652 -14.45920 -14.24399 -13.98003 -13.69605 -13.51055 -13.16743 -13.09826 -12.80908 -12.75389 -12.42947 -12.34124 -12.20405 -11.90801 -11.80308 -11.77519 -11.42324 -11.16046 -10.76693 -10.57003 -10.33042 -10.22169 -10.07467 -9.95102 -9.77768 -9.59676 -9.44280 -9.31748 -9.21868 -8.69754 -8.53773 -8.35604 -6.56915 -5.72922 -3.20879 0.47753 1.01230 2.75992 2.95547 3.42876 3.47974 3.49735 3.50718 3.71798 4.10373 4.28130 4.55045 4.55766 4.59138 4.75155 4.75964 5.02077 5.03408 5.14563 5.38574 5.43304 5.46211 5.59958 5.62615 5.76424 5.83670 5.90835 6.02377 6.06470 6.09174 6.31154 6.32480 6.44949 6.47038 6.53113 6.74854 6.86323 6.91194 6.93384 6.98448 7.05936 7.16185 7.27475 7.60082 7.63730 7.80161 7.83356 8.04631 8.49528 8.53084 9.26502 9.90689 10.45762 11.33839 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.003009 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.822142 B = 9302.750796 C =10302.445958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.065 3.935 4 C 0.035 3.965 5 N -0.459 5.459 6 C 0.099 3.901 7 C -0.147 4.147 8 C 0.554 3.446 9 O -0.515 6.515 10 N -0.720 5.720 11 C 0.156 3.844 12 H 0.105 0.895 13 C -0.122 4.122 14 C -0.131 4.131 15 C 0.168 3.832 16 N -0.588 5.588 17 C -0.249 4.249 18 H 0.064 0.936 19 C 0.007 3.993 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.162 3.838 26 C -0.150 4.150 27 C -0.012 4.012 28 C -0.115 4.115 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.390 0.610 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.028 0.972 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.004 0.996 41 H 0.252 0.748 42 H 0.028 0.972 43 H 0.033 0.967 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.454 1.101 1.852 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.017 3.983 4 C -0.122 4.122 5 N -0.168 5.168 6 C -0.061 4.061 7 C -0.153 4.153 8 C 0.339 3.661 9 O -0.391 6.391 10 N -0.370 5.370 11 C 0.054 3.946 12 H 0.123 0.877 13 C -0.160 4.160 14 C -0.170 4.170 15 C 0.045 3.955 16 N -0.310 5.310 17 C -0.379 4.379 18 H 0.082 0.918 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.033 3.967 26 C -0.192 4.192 27 C -0.021 4.021 28 C -0.171 4.171 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.224 0.776 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.022 0.978 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.084 0.916 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.268 0.846 1.755 20.362 hybrid contribution 0.279 -0.962 -0.019 1.002 sum -19.989 -0.116 1.736 20.065 Atomic orbital electron populations 1.23136 0.78060 1.04459 1.01503 1.86109 1.21439 1.25577 1.88623 1.19775 0.92367 0.86006 1.00140 1.23015 1.00565 0.87124 1.01538 1.67504 1.11940 1.25973 1.11368 1.22829 0.88668 0.98155 0.96420 1.20936 0.95510 0.93617 1.05197 1.17902 0.86254 0.84228 0.77735 1.90802 1.62750 1.37227 1.48331 1.46479 1.09440 1.07378 1.73729 1.21344 0.75863 1.00078 0.97328 0.87665 1.21369 0.99106 0.96549 0.98953 1.20990 0.94034 1.05199 0.96798 1.20097 0.97858 0.89703 0.87881 1.44174 1.39864 1.29974 1.16961 1.19156 1.21903 1.03737 0.93098 0.91844 1.25069 0.99819 0.97698 0.96497 1.69854 1.42465 1.43028 0.99353 0.86297 0.81690 0.81955 0.76794 1.21421 1.21727 1.20661 1.20366 0.88300 0.95381 0.92690 1.23296 0.99482 1.01640 0.94828 1.19901 0.90710 0.96133 0.95342 1.20935 0.99611 0.92306 1.04209 0.87804 0.92403 0.92396 0.82260 0.82174 0.77586 0.91871 0.92848 0.95291 0.87448 0.89421 0.97780 0.93750 0.95418 0.94892 0.93693 0.92433 0.90104 0.91583 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.12 16 2 O -0.31 -3.15 9.56 -19.50 -0.19 -3.34 16 3 C 0.06 0.76 6.68 -39.13 -0.26 0.50 16 4 C 0.03 0.37 10.21 -17.30 -0.18 0.19 16 5 N -0.46 -5.53 10.34 -12.79 -0.13 -5.66 16 6 C 0.10 1.18 10.69 -17.14 -0.18 1.00 16 7 C -0.15 -2.07 5.89 -104.84 -0.62 -2.69 16 8 C 0.55 9.30 7.68 -12.33 -0.09 9.20 16 9 O -0.51 -10.65 13.17 5.32 0.07 -10.58 16 10 N -0.72 -11.00 4.93 -55.20 -0.27 -11.28 16 11 C 0.16 2.93 2.22 -68.39 -0.15 2.78 16 12 H 0.11 2.54 6.26 -51.93 -0.33 2.21 16 13 C -0.12 -2.10 5.34 -28.41 -0.15 -2.25 16 14 C -0.13 -2.73 5.01 -30.19 -0.15 -2.88 16 15 C 0.17 3.83 5.23 -5.20 -0.03 3.80 16 16 N -0.59 -14.26 2.59 -175.10 -0.45 -14.71 16 17 C -0.25 -6.74 9.60 -15.06 -0.14 -6.88 16 18 H 0.06 1.73 7.85 -52.49 -0.41 1.31 16 19 C 0.01 0.20 5.07 -17.43 -0.09 0.11 16 20 N -0.90 -24.90 9.14 55.49 0.51 -24.39 16 21 Si 0.90 21.86 29.57 -169.99 -5.03 16.84 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.16 3.38 5.17 -4.67 -0.02 3.35 16 26 C -0.15 -2.90 5.98 -24.76 -0.15 -3.05 16 27 C -0.01 -0.16 5.97 -103.76 -0.62 -0.78 16 28 C -0.11 -1.63 8.69 36.01 0.31 -1.31 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.26 7.67 -51.93 -0.40 -0.14 16 31 H 0.06 0.26 7.67 -51.93 -0.40 -0.14 16 32 H 0.16 1.17 6.30 -52.49 -0.33 0.84 16 33 H 0.16 1.49 6.46 -52.49 -0.34 1.15 16 34 H 0.39 4.57 6.58 -40.82 -0.27 4.30 16 35 H 0.06 1.04 6.29 -51.93 -0.33 0.71 16 36 H 0.05 0.79 7.86 -51.93 -0.41 0.39 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.11 2.65 5.04 -51.93 -0.26 2.39 16 39 H 0.09 2.24 6.26 -51.93 -0.33 1.92 16 40 H 0.00 0.09 8.13 -51.93 -0.42 -0.34 16 41 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.03 0.52 6.89 -51.93 -0.36 0.16 16 43 H 0.03 0.69 7.99 -51.93 -0.41 0.28 16 44 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.07 0.83 7.43 -51.93 -0.39 0.44 16 48 H 0.10 1.67 5.99 -51.93 -0.31 1.36 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -31.23 369.52 -8.39 -39.62 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.93 Total: 5.72 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -1.53 Total: 2.20 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.35 Total: -56.04 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.12 Total: -13.92 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.23 -8.39 -39.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052496420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.397 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds