Wall clock time and date at job start Tue Mar 31 2020 17:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35923 * 117.00311 * 2 1 4 4 C 1.38852 * 120.40232 * 0.02562 * 3 2 1 5 5 N 1.31881 * 120.99683 * 179.97438 * 4 3 2 6 6 C 1.31679 * 121.94513 * 359.69587 * 5 4 3 7 7 C 1.39530 * 120.68796 * 0.59432 * 6 5 4 8 8 C 1.47849 * 120.53303 * 179.70323 * 7 6 5 9 9 O 1.21547 * 120.00195 * 174.07929 * 8 7 6 10 10 N 1.34775 * 119.99740 * 354.07348 * 8 7 6 11 11 C 1.46507 * 120.00009 * 180.02562 * 10 8 7 12 12 H 1.08990 * 109.20269 * 35.64174 * 11 10 8 13 13 C 1.50122 * 109.20705 * 155.00007 * 11 10 8 14 14 C 1.52522 * 105.41341 * 218.02909 * 13 11 10 15 15 C 1.46245 * 114.27737 * 270.59368 * 14 13 11 16 16 N 1.50165 * 107.58750 * 58.37533 * 15 14 13 17 17 C 1.36939 * 120.53729 * 109.60671 * 16 15 14 18 18 H 1.07994 * 120.00246 * 150.35521 * 17 16 15 19 19 C 1.38813 * 119.99683 * 330.35249 * 17 16 15 20 20 N 1.31617 * 120.00201 * 349.10247 * 19 17 16 21 21 Si 1.86802 * 119.99631 * 169.10416 * 19 17 16 22 22 H 1.48492 * 109.47427 * 90.00388 * 21 19 17 23 23 H 1.48508 * 109.46708 * 210.00009 * 21 19 17 24 24 H 1.48496 * 109.47357 * 329.99545 * 21 19 17 25 25 C 1.43413 * 118.94609 * 289.71040 * 16 15 14 26 26 C 1.54840 * 109.20769 * 276.32648 * 11 10 8 27 27 C 1.38838 * 120.40447 * 180.02562 * 3 2 1 28 28 C 1.50700 * 120.88395 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46781 * 299.99699 * 1 2 3 31 31 H 1.08994 * 109.46922 * 59.99789 * 1 2 3 32 32 H 1.08001 * 119.49913 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.65642 * 180.31485 * 6 5 4 34 34 H 0.97004 * 120.00227 * 0.02562 * 10 8 7 35 35 H 1.09004 * 110.25094 * 99.05999 * 13 11 10 36 36 H 1.08998 * 110.37400 * 337.06771 * 13 11 10 37 37 H 1.09002 * 108.52337 * 149.35912 * 14 13 11 38 38 H 1.08996 * 108.40492 * 31.74835 * 14 13 11 39 39 H 1.08999 * 109.84416 * 177.91756 * 15 14 13 40 40 H 1.09000 * 109.84668 * 298.83488 * 15 14 13 41 41 H 0.97001 * 120.00330 * 180.02562 * 20 19 17 42 42 H 1.09005 * 108.11927 * 329.72717 * 25 16 15 43 43 H 1.08998 * 107.96951 * 213.07036 * 25 16 15 44 44 H 1.09006 * 109.36039 * 320.99487 * 26 11 10 45 45 H 1.09004 * 109.35870 * 80.72013 * 26 11 10 46 46 H 1.08993 * 109.47072 * 263.13916 * 28 27 3 47 47 H 1.08997 * 109.46536 * 23.13880 * 28 27 3 48 48 H 1.09003 * 109.47172 * 143.13767 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8848 3.5621 0.0010 6 6 3.1954 3.6891 0.0070 7 6 4.0200 2.5636 0.0006 8 6 5.4912 2.7102 0.0007 9 8 6.1999 1.7281 0.1038 10 7 6.0465 3.9330 -0.1135 11 6 7.5043 4.0783 -0.1139 12 1 7.9493 3.2272 -0.6292 13 6 7.8745 5.3414 -0.8359 14 6 9.1409 5.0058 -1.6168 15 6 10.3818 5.2381 -0.8786 16 7 10.3306 4.4039 0.3689 17 6 11.1441 3.3113 0.5092 18 1 11.4734 3.0057 1.4913 19 6 11.5455 2.5965 -0.6110 20 7 10.9816 2.8294 -1.7772 21 14 12.8861 1.3040 -0.4632 22 1 12.2729 -0.0116 -0.1502 23 1 13.6281 1.2116 -1.7463 24 1 13.8231 1.6848 0.6241 25 6 9.4145 4.7682 1.4105 26 6 8.0135 4.1106 1.3480 27 6 3.4321 1.2934 -0.0005 28 6 4.2810 0.0483 -0.0005 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2198 2.3226 0.0005 33 1 3.6367 4.6748 0.0124 34 1 5.4809 4.7168 -0.1954 35 1 8.0726 6.1403 -0.1212 36 1 7.0773 5.6360 -1.5184 37 1 9.1591 5.6104 -2.5235 38 1 9.1001 3.9550 -1.9034 39 1 11.2357 4.9412 -1.4876 40 1 10.4640 6.2927 -0.6155 41 1 11.2618 2.3297 -2.5599 42 1 9.2835 5.8501 1.3835 43 1 9.8702 4.5071 2.3656 44 1 7.3175 4.6840 1.9605 45 1 8.0772 3.0921 1.7310 46 1 4.5875 -0.1825 1.0196 47 1 3.7047 -0.7843 -0.4040 48 1 5.1648 0.2111 -0.6174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052496420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:12 Heat of formation + Delta-G solvation = -24.875305 kcal Electronic energy + Delta-G solvation = -29544.399399 eV Core-core repulsion = 25600.011564 eV Total energy + Delta-G solvation = -3944.387835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.13452 -40.81760 -39.42439 -38.81520 -36.37690 -34.72507 -34.14021 -33.27241 -32.37638 -30.99931 -28.95729 -28.48562 -27.86981 -25.79444 -25.38715 -24.28622 -23.31008 -22.08427 -21.41115 -20.73711 -19.30616 -18.67297 -18.40064 -17.47487 -17.37563 -17.04974 -16.88606 -16.81903 -16.20984 -15.74418 -15.61289 -15.22933 -15.15642 -15.00573 -14.54118 -14.10025 -14.01306 -13.89874 -13.85451 -13.78224 -13.42827 -13.17675 -13.13580 -13.09526 -12.75102 -12.70108 -12.37648 -12.33164 -12.05933 -11.94455 -11.71278 -11.54655 -11.16628 -11.12839 -11.08413 -10.66768 -10.43374 -10.41642 -9.91144 -9.53757 -8.51176 -7.79702 -5.28741 -0.51011 0.07441 1.44841 1.47428 1.54575 1.78904 1.92322 2.36108 2.54021 2.68592 3.27041 3.34838 3.40718 3.61337 3.65441 3.67588 3.99341 4.07338 4.08754 4.19713 4.35583 4.37982 4.40583 4.51078 4.54328 4.63334 4.65747 4.68958 4.76813 4.78149 4.91272 4.93838 5.00733 5.09027 5.16510 5.22765 5.29984 5.33929 5.40040 5.47024 5.54934 5.68991 5.71214 5.83396 6.14064 6.27530 6.49607 6.56978 6.70470 7.24237 7.25385 7.94978 8.44710 9.23015 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.003009 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.822142 B = 9302.750796 C =10302.445958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.322 6.322 3 C 0.068 3.932 4 C 0.048 3.952 5 N -0.465 5.465 6 C 0.106 3.894 7 C -0.161 4.161 8 C 0.551 3.449 9 O -0.565 6.565 10 N -0.704 5.704 11 C 0.170 3.830 12 H 0.045 0.955 13 C -0.107 4.107 14 C -0.126 4.126 15 C 0.170 3.830 16 N -0.603 5.603 17 C -0.261 4.261 18 H 0.055 0.945 19 C -0.039 4.039 20 N -0.914 5.914 21 Si 0.955 3.045 22 H -0.296 1.296 23 H -0.290 1.290 24 H -0.273 1.273 25 C 0.157 3.843 26 C -0.140 4.140 27 C -0.037 4.037 28 C -0.106 4.106 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.197 0.803 33 H 0.189 0.811 34 H 0.412 0.588 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.031 0.969 41 H 0.245 0.755 42 H 0.059 0.941 43 H 0.025 0.975 44 H 0.081 0.919 45 H 0.018 0.982 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.672 3.223 2.295 24.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.234 6.234 3 C 0.020 3.980 4 C -0.110 4.110 5 N -0.174 5.174 6 C -0.053 4.053 7 C -0.166 4.166 8 C 0.338 3.662 9 O -0.445 6.445 10 N -0.356 5.356 11 C 0.066 3.934 12 H 0.063 0.937 13 C -0.145 4.145 14 C -0.165 4.165 15 C 0.047 3.953 16 N -0.325 5.325 17 C -0.392 4.392 18 H 0.072 0.928 19 C -0.236 4.236 20 N -0.560 5.560 21 Si 0.785 3.215 22 H -0.223 1.223 23 H -0.216 1.216 24 H -0.198 1.198 25 C 0.028 3.972 26 C -0.182 4.182 27 C -0.046 4.046 28 C -0.162 4.162 29 H 0.140 0.860 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.214 0.786 33 H 0.205 0.795 34 H 0.251 0.749 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.099 0.901 45 H 0.037 0.963 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.523 3.016 2.207 23.818 hybrid contribution 1.148 -1.676 -0.132 2.036 sum -22.375 1.340 2.075 22.511 Atomic orbital electron populations 1.23520 0.75460 1.06317 1.02983 1.86104 1.24096 1.24950 1.88282 1.19746 0.91521 0.87170 0.99526 1.23594 1.02151 0.86134 0.99087 1.67635 1.11638 1.26476 1.11634 1.23156 0.88577 0.98386 0.95136 1.20702 0.93634 0.94737 1.07567 1.18387 0.87470 0.83785 0.76538 1.90794 1.64235 1.38919 1.50567 1.46180 1.08265 1.08025 1.73143 1.20862 0.77474 0.98726 0.96362 0.93690 1.21276 0.98048 0.95864 0.99303 1.20802 0.95076 1.02844 0.97802 1.20051 0.97504 0.90545 0.87164 1.44337 1.40590 1.29481 1.18077 1.19322 1.22488 1.04680 0.92704 0.92776 1.25683 1.01756 0.99542 0.96579 1.70045 1.43067 1.43478 0.99382 0.85466 0.79752 0.79521 0.76780 1.22328 1.21644 1.19776 1.20497 0.88285 0.97156 0.91224 1.23160 0.99552 0.99745 0.95704 1.19989 0.92068 0.95716 0.96810 1.20738 0.98821 0.93610 1.03006 0.86015 0.90824 0.90841 0.78601 0.79472 0.74947 0.89708 0.89585 0.93761 0.91718 0.92977 0.95103 0.94545 0.92269 0.95674 0.90101 0.96322 0.91158 0.90336 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.20 16 2 O -0.32 -6.01 9.56 -92.68 -0.89 -6.89 16 3 C 0.07 1.49 6.68 22.56 0.15 1.64 16 4 C 0.05 0.85 10.21 84.83 0.87 1.72 16 5 N -0.46 -9.61 10.34 -194.39 -2.01 -11.62 16 6 C 0.11 2.26 10.69 85.03 0.91 3.17 16 7 C -0.16 -4.44 5.89 -20.00 -0.12 -4.56 16 8 C 0.55 18.91 7.68 86.79 0.67 19.58 16 9 O -0.57 -25.12 13.17 -3.86 -0.05 -25.17 16 10 N -0.70 -20.81 4.93 -446.84 -2.20 -23.01 16 11 C 0.17 6.34 2.22 44.69 0.10 6.44 16 12 H 0.04 2.29 6.26 -2.39 -0.01 2.27 16 13 C -0.11 -3.43 5.34 29.51 0.16 -3.28 16 14 C -0.13 -5.21 5.01 28.36 0.14 -5.07 16 15 C 0.17 7.75 5.23 83.58 0.44 8.19 16 16 N -0.60 -29.60 2.59 -707.88 -1.83 -31.43 16 17 C -0.26 -14.62 9.60 84.03 0.81 -13.81 16 18 H 0.05 3.06 7.85 -2.91 -0.02 3.04 16 19 C -0.04 -2.22 5.07 84.86 0.43 -1.79 16 20 N -0.91 -52.81 9.14 21.65 0.20 -52.61 16 21 Si 0.96 46.60 29.57 68.60 2.03 48.63 16 22 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 24 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 25 C 0.16 6.41 5.17 87.60 0.45 6.87 16 26 C -0.14 -5.34 5.98 31.87 0.19 -5.15 16 27 C -0.04 -1.02 5.97 -19.30 -0.12 -1.14 16 28 C -0.11 -3.19 8.69 71.24 0.62 -2.57 16 29 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.38 7.67 -2.39 -0.02 0.36 16 31 H 0.07 0.38 7.67 -2.39 -0.02 0.37 16 32 H 0.20 1.93 6.30 -2.91 -0.02 1.91 16 33 H 0.19 2.74 6.46 -2.91 -0.02 2.73 16 34 H 0.41 8.37 6.58 -92.71 -0.61 7.76 16 35 H 0.08 2.41 6.29 -2.38 -0.01 2.40 16 36 H 0.09 2.22 7.86 -2.39 -0.02 2.20 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 3.31 5.04 -2.39 -0.01 3.30 16 39 H 0.05 2.73 6.26 -2.39 -0.01 2.72 16 40 H 0.03 1.23 8.13 -2.39 -0.02 1.21 16 41 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 42 H 0.06 2.05 6.89 -2.38 -0.02 2.04 16 43 H 0.02 1.05 7.99 -2.39 -0.02 1.03 16 44 H 0.08 2.50 8.13 -2.38 -0.02 2.48 16 45 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.08 2.06 7.43 -2.39 -0.02 2.05 16 48 H 0.07 2.58 5.99 -2.39 -0.01 2.57 16 Total: -1.00 -73.75 369.52 2.44 -71.31 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.38 Total: 19.39 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.81 Total: 11.42 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -5.85 Total: -118.68 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.94 Total: -32.06 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -73.75 2.44 -71.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052496420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.433 kcal (2) G-P(sol) polarization free energy of solvation -73.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds