Wall clock time and date at job start Tue Mar 31 2020 17:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37990 * 120.82451 * 2 1 4 4 C 1.39128 * 119.26991 * 180.27248 * 3 2 1 5 5 O 1.35499 * 119.52969 * 179.70054 * 4 3 2 6 6 N 1.32440 * 120.94276 * 359.72549 * 4 3 2 7 7 C 1.31634 * 121.80295 * 359.97438 * 6 4 3 8 8 C 1.50699 * 119.68638 * 180.02562 * 7 6 4 9 9 C 1.39568 * 120.62459 * 359.97438 * 7 6 4 10 10 C 1.47618 * 120.49464 * 180.02562 * 9 7 6 11 11 O 1.21580 * 119.99596 * 90.00940 * 10 9 7 12 12 N 1.34777 * 120.00144 * 269.99794 * 10 9 7 13 13 C 1.46504 * 119.99925 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.19846 * 35.65024 * 13 12 10 15 15 C 1.50131 * 109.20206 * 155.00282 * 13 12 10 16 16 C 1.52530 * 105.40998 * 218.02696 * 15 13 12 17 17 C 1.46241 * 114.27810 * 270.59721 * 16 15 13 18 18 N 1.50169 * 107.53137 * 58.41353 * 17 16 15 19 19 C 1.36928 * 120.53947 * 109.56927 * 18 17 16 20 20 H 1.08003 * 120.00263 * 157.03730 * 19 18 17 21 21 C 1.38817 * 119.99710 * 336.75755 * 19 18 17 22 22 N 1.31617 * 120.00194 * 340.41623 * 21 19 18 23 23 Si 1.86806 * 119.99892 * 160.41890 * 21 19 18 24 24 H 1.48500 * 109.47001 * 59.99993 * 23 21 19 25 25 H 1.48494 * 109.46853 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46798 * 299.99797 * 23 21 19 27 27 C 1.43435 * 118.92055 * 289.83599 * 18 17 16 28 28 C 1.54404 * 116.38740 * 91.46110 * 27 18 17 29 29 H 1.09000 * 109.47305 * 270.27501 * 1 2 3 30 30 H 1.09004 * 109.47157 * 30.26874 * 1 2 3 31 31 H 1.09000 * 109.47510 * 150.27029 * 1 2 3 32 32 H 1.08004 * 120.36987 * 0.02562 * 3 2 1 33 33 H 0.96695 * 113.99720 * 270.02106 * 5 4 3 34 34 H 1.09004 * 109.47041 * 269.97402 * 8 7 6 35 35 H 1.08994 * 109.47538 * 29.97983 * 8 7 6 36 36 H 1.09006 * 109.46878 * 149.97981 * 8 7 6 37 37 H 0.97002 * 119.99848 * 0.02562 * 12 10 9 38 38 H 1.09004 * 110.24574 * 99.06478 * 15 13 12 39 39 H 1.08994 * 110.37418 * 337.06717 * 15 13 12 40 40 H 1.09004 * 108.52027 * 149.35326 * 16 15 13 41 41 H 1.09003 * 108.40176 * 31.75285 * 16 15 13 42 42 H 1.08998 * 109.84743 * 298.89824 * 17 16 15 43 43 H 1.09003 * 109.84016 * 177.91825 * 17 16 15 44 44 H 0.96994 * 120.00067 * 180.02562 * 22 21 19 45 45 H 1.08999 * 108.15570 * 213.03311 * 27 18 17 46 46 H 1.08998 * 108.16167 * 329.59842 * 27 18 17 47 47 H 1.08999 * 109.43936 * 198.43389 * 28 27 18 48 48 H 1.09000 * 109.35202 * 78.80431 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6048 1.1472 -0.0058 5 8 4.3043 2.3077 -0.0120 6 7 4.2547 -0.0067 -0.0058 7 6 3.6204 -1.1601 0.0001 8 6 4.4079 -2.4450 0.0004 9 6 2.2254 -1.2044 0.0072 10 6 1.5171 -2.4994 0.0143 11 8 1.2305 -3.0297 1.0702 12 7 1.1878 -3.0939 -1.1496 13 6 0.4843 -4.3790 -1.1424 14 1 -0.2100 -4.4028 -0.3025 15 6 -0.2846 -4.5281 -2.4233 16 6 -1.5928 -5.2088 -2.0338 17 6 -1.5430 -6.6700 -2.0651 18 7 -0.4561 -7.1058 -1.1250 19 6 -0.7649 -7.7284 0.0548 20 1 -0.0337 -8.3571 0.5412 21 6 -2.0157 -7.5467 0.6288 22 7 -2.7551 -6.5144 0.2825 23 14 -2.6497 -8.7676 1.8926 24 1 -1.7242 -8.8038 3.0534 25 1 -3.9998 -8.3509 2.3494 26 1 -2.7287 -10.1180 1.2800 27 6 0.9106 -6.8541 -1.4803 28 6 1.5150 -5.5233 -0.9829 29 1 -0.3634 0.0049 1.0276 30 1 -0.3634 0.8876 -0.5180 31 1 -0.3634 -0.8924 -0.5096 32 1 1.6936 2.1314 0.0004 33 1 4.5034 2.6421 -0.8971 34 1 4.5931 -2.7579 -1.0273 35 1 5.3589 -2.2882 0.5094 36 1 3.8413 -3.2183 0.5191 37 1 1.4167 -2.6709 -1.9920 38 1 0.2699 -5.1505 -3.1257 39 1 -0.4839 -3.5506 -2.8622 40 1 -2.3739 -4.8742 -2.7165 41 1 -1.8580 -4.8929 -1.0248 42 1 -1.3172 -7.0110 -3.0755 43 1 -2.4994 -7.0798 -1.7405 44 1 -3.6289 -6.3873 0.6838 45 1 1.5196 -7.6670 -1.0849 46 1 0.9886 -6.8763 -2.5673 47 1 2.4068 -5.2900 -1.5646 48 1 1.7870 -5.6206 0.0682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052949527.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:38 Heat of formation + Delta-G solvation = -17.206391 kcal Electronic energy + Delta-G solvation = -29858.127084 eV Core-core repulsion = 25914.071798 eV Total energy + Delta-G solvation = -3944.055286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.07898 -39.44781 -37.88410 -37.15446 -34.62815 -34.50164 -32.47782 -31.79078 -31.57447 -29.87933 -28.26358 -27.86055 -26.15386 -24.31419 -23.80616 -22.73144 -21.52261 -20.66511 -19.99599 -19.13936 -18.64752 -17.54692 -17.34842 -16.74061 -16.04124 -15.62311 -15.04637 -14.72805 -14.38505 -14.32595 -13.94644 -13.82142 -13.75551 -13.50058 -13.33328 -13.19582 -12.87236 -12.51205 -12.45992 -12.26875 -12.25469 -12.07836 -11.87668 -11.83656 -11.48213 -11.24725 -10.77857 -10.63718 -10.42313 -10.29144 -10.10472 -9.92055 -9.77191 -9.73417 -9.50961 -9.39485 -9.36083 -8.99169 -8.63151 -8.36605 -6.70007 -5.76477 -3.14943 0.57189 0.91137 2.75060 3.05754 3.41028 3.43158 3.47150 3.48388 3.50157 4.23311 4.32941 4.54907 4.70664 4.81294 4.99157 5.12829 5.27701 5.32882 5.36806 5.39298 5.40065 5.45380 5.53547 5.69151 5.71756 5.77172 5.84802 5.93619 5.98074 5.99271 6.21587 6.24674 6.28851 6.39009 6.45933 6.68406 6.83583 6.88425 6.92087 6.99970 7.10323 7.15932 7.20170 7.58538 7.63257 7.75848 7.79031 7.97036 8.44703 8.45505 9.21978 9.89397 10.41447 11.31257 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.003038 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.714048 B = 9214.506956 C = 9337.418454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.011 3.989 3 C -0.197 4.197 4 C 0.326 3.674 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.193 3.807 8 C -0.113 4.113 9 C -0.186 4.186 10 C 0.564 3.436 11 O -0.517 6.517 12 N -0.719 5.719 13 C 0.154 3.846 14 H 0.104 0.896 15 C -0.121 4.121 16 C -0.129 4.129 17 C 0.165 3.835 18 N -0.587 5.587 19 C -0.249 4.249 20 H 0.067 0.933 21 C 0.004 3.996 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.286 1.286 27 C 0.162 3.838 28 C -0.151 4.151 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.401 0.599 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.392 0.608 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.030 0.970 41 H 0.103 0.897 42 H 0.006 0.994 43 H 0.091 0.909 44 H 0.253 0.747 45 H 0.033 0.967 46 H 0.028 0.972 47 H 0.046 0.954 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.083 15.108 -8.087 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.003 3.997 3 C -0.218 4.218 4 C 0.148 3.852 5 O -0.288 6.288 6 N -0.228 5.228 7 C 0.055 3.945 8 C -0.170 4.170 9 C -0.191 4.191 10 C 0.347 3.653 11 O -0.392 6.392 12 N -0.369 5.369 13 C 0.052 3.948 14 H 0.122 0.878 15 C -0.159 4.159 16 C -0.168 4.168 17 C 0.041 3.959 18 N -0.309 5.309 19 C -0.379 4.379 20 H 0.085 0.915 21 C -0.194 4.194 22 N -0.545 5.545 23 Si 0.730 3.270 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.212 1.212 27 C 0.032 3.968 28 C -0.194 4.194 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.163 0.837 33 H 0.259 0.741 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.121 0.879 42 H 0.024 0.976 43 H 0.109 0.891 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.046 0.954 47 H 0.064 0.936 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.539 14.737 -6.646 18.771 hybrid contribution -0.919 0.118 -0.051 0.928 sum 8.620 14.855 -6.697 18.435 Atomic orbital electron populations 1.20955 0.89149 1.03956 1.04075 1.20247 0.97070 0.90860 0.91481 1.21856 0.93682 0.99321 1.06956 1.19228 0.87014 0.85007 0.94000 1.84737 1.76068 1.34153 1.33885 1.66978 1.41879 0.97834 1.16104 1.21053 0.89250 0.93078 0.91168 1.20883 1.00568 0.91810 1.03780 1.20903 0.94878 0.94881 1.08452 1.17844 0.78931 0.83620 0.84877 1.90896 1.52957 1.64590 1.30754 1.46596 1.59307 1.23660 1.07321 1.21352 0.93689 0.79774 0.99972 0.87835 1.21367 0.98647 0.99714 0.96197 1.20938 0.93289 0.98814 1.03776 1.20169 0.94275 0.92354 0.89096 1.44274 0.99553 1.67344 1.19701 1.19164 0.99089 1.20562 0.99070 0.91520 1.24874 0.99230 0.97032 0.98269 1.69937 1.12279 1.26491 1.45835 0.86397 0.77924 0.81289 0.81363 1.21029 1.21770 1.21239 1.20249 0.87412 0.92994 0.96154 1.23232 0.96785 0.97801 1.01534 0.89440 0.90328 0.90253 0.83734 0.74108 0.89586 0.89740 0.89699 0.77523 0.91814 0.92864 0.95174 0.87897 0.97578 0.89103 0.93738 0.94863 0.95362 0.93560 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.68 36.00 0.35 -0.97 16 2 C 0.01 0.13 5.95 -103.96 -0.62 -0.48 16 3 C -0.20 -2.04 9.73 -39.34 -0.38 -2.42 16 4 C 0.33 3.75 7.74 -16.96 -0.13 3.62 16 5 O -0.48 -4.48 13.55 -18.19 -0.25 -4.73 16 6 N -0.51 -6.74 10.28 -9.20 -0.09 -6.84 16 7 C 0.19 2.57 6.82 -82.18 -0.56 2.01 16 8 C -0.11 -1.33 9.78 36.01 0.35 -0.98 16 9 C -0.19 -2.57 5.65 -104.82 -0.59 -3.16 16 10 C 0.56 9.20 4.28 -12.43 -0.05 9.14 16 11 O -0.52 -11.04 16.77 5.29 0.09 -10.96 16 12 N -0.72 -10.49 4.97 -55.27 -0.27 -10.76 16 13 C 0.15 2.78 2.22 -68.39 -0.15 2.63 16 14 H 0.10 2.43 6.26 -51.93 -0.33 2.11 16 15 C -0.12 -2.00 5.34 -28.40 -0.15 -2.15 16 16 C -0.13 -2.60 5.02 -30.18 -0.15 -2.75 16 17 C 0.16 3.67 5.25 -5.20 -0.03 3.64 16 18 N -0.59 -13.98 2.61 -175.40 -0.46 -14.44 16 19 C -0.25 -6.68 9.62 -15.06 -0.14 -6.83 16 20 H 0.07 1.80 7.89 -52.48 -0.41 1.38 16 21 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 22 N -0.90 -24.66 9.42 55.49 0.52 -24.13 16 23 Si 0.90 21.70 29.60 -169.99 -5.03 16.67 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.16 3.27 5.13 -4.93 -0.03 3.24 16 28 C -0.15 -2.80 5.97 -25.03 -0.15 -2.95 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.08 0.94 7.19 -51.93 -0.37 0.57 16 32 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.40 1.55 9.06 45.56 0.41 1.96 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.14 7.06 -51.93 -0.37 0.78 16 37 H 0.39 4.50 8.46 -40.82 -0.35 4.16 16 38 H 0.06 1.01 6.28 -51.93 -0.33 0.68 16 39 H 0.05 0.75 7.86 -51.93 -0.41 0.34 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.10 2.47 5.29 -51.93 -0.27 2.20 16 42 H 0.01 0.13 8.13 -51.93 -0.42 -0.30 16 43 H 0.09 2.29 6.05 -51.93 -0.31 1.97 16 44 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.03 0.68 7.99 -51.93 -0.41 0.27 16 46 H 0.03 0.52 6.89 -51.93 -0.36 0.16 16 47 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 48 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -32.42 379.31 -8.74 -41.16 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.44 Total: 6.68 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -2.52 Total: 1.63 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.30 Total: -56.17 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.16 Total: -15.68 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.42 -8.74 -41.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052949527.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.954 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds