Wall clock time and date at job start Tue Mar 31 2020 18:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35453 * 125.56157 * 2 1 4 4 C 1.39838 * 107.86085 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.45621 * 179.97438 * 4 3 2 6 6 C 1.37872 * 107.08759 * 0.02562 * 4 3 2 7 7 C 1.46673 * 126.23417 * 179.97438 * 6 4 3 8 8 O 1.21696 * 120.00375 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99992 * 180.02562 * 7 6 4 10 10 C 1.46507 * 119.99725 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.46647 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.36971 * 57.81596 * 11 10 9 13 13 C 1.54555 * 110.32138 * 179.97438 * 11 10 9 14 14 C 1.54774 * 104.07821 * 142.48979 * 13 11 10 15 15 C 1.53348 * 103.67263 * 359.14144 * 14 13 11 16 16 C 1.52303 * 116.13344 * 108.91148 * 15 14 13 17 17 N 1.47284 * 87.68708 * 91.18103 * 16 15 14 18 18 C 1.36942 * 135.92786 * 206.12790 * 17 16 15 19 19 H 1.08003 * 120.00136 * 6.79529 * 18 17 16 20 20 C 1.38804 * 119.99713 * 186.79235 * 18 17 16 21 21 N 1.31621 * 119.99893 * 172.37074 * 20 18 17 22 22 Si 1.86794 * 120.00271 * 352.37001 * 20 18 17 23 23 H 1.48509 * 109.47067 * 175.35403 * 22 20 18 24 24 H 1.48499 * 109.47130 * 55.35383 * 22 20 18 25 25 H 1.48497 * 109.47427 * 295.35226 * 22 20 18 26 26 C 1.47281 * 88.14217 * 26.38451 * 17 16 15 27 27 O 1.43112 * 106.44597 * 337.44794 * 15 14 13 28 28 N 1.35533 * 125.56418 * 180.27174 * 2 1 3 29 29 H 0.97004 * 125.67470 * 0.06681 * 28 2 1 30 30 H 1.09001 * 109.47483 * 89.99947 * 1 2 3 31 31 H 1.09003 * 109.47002 * 210.00145 * 1 2 3 32 32 H 1.09003 * 109.47211 * 329.99345 * 1 2 3 33 33 H 1.07993 * 126.06961 * 359.93031 * 3 2 1 34 34 H 1.09000 * 109.47532 * 270.04659 * 5 4 3 35 35 H 1.08997 * 109.47148 * 30.04448 * 5 4 3 36 36 H 1.09006 * 109.47544 * 150.04790 * 5 4 3 37 37 H 0.96998 * 120.00139 * 0.02562 * 9 7 6 38 38 H 1.09000 * 109.47167 * 60.00159 * 10 9 7 39 39 H 1.08993 * 109.46813 * 299.99688 * 10 9 7 40 40 H 1.08995 * 110.50909 * 23.84433 * 13 11 10 41 41 H 1.08997 * 110.50963 * 261.13338 * 13 11 10 42 42 H 1.08997 * 110.58309 * 240.59490 * 14 13 11 43 43 H 1.09000 * 110.71110 * 117.74543 * 14 13 11 44 44 H 1.09003 * 113.51527 * 336.47994 * 16 15 14 45 45 H 1.08998 * 113.58332 * 205.89684 * 16 15 14 46 46 H 0.97008 * 119.99965 * 4.91436 * 21 20 18 47 47 H 1.08999 * 113.51942 * 88.32370 * 26 17 16 48 48 H 1.09003 * 113.51069 * 218.91606 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6767 0.0006 5 6 4.8485 1.5592 0.0003 6 6 3.6122 -0.7019 0.0004 7 6 4.7859 -1.5815 0.0003 8 8 5.9049 -1.1031 0.0009 9 7 4.6252 -2.9197 -0.0005 10 6 5.7977 -3.7982 0.0000 11 6 5.3407 -5.2583 -0.0004 12 1 4.7084 -5.4578 -0.8656 13 6 6.5636 -6.2035 -0.0006 14 6 6.1332 -7.3762 0.9132 15 6 4.7215 -6.9839 1.3657 16 6 3.5776 -7.7997 0.7778 17 7 3.6995 -8.6968 1.9396 18 6 3.4171 -10.0108 2.2018 19 1 3.0992 -10.6647 1.4032 20 6 3.5394 -10.5024 3.4942 21 7 3.1267 -11.7198 3.7770 22 14 4.2899 -9.4363 4.8319 23 1 4.2043 -10.1436 6.1349 24 1 3.5483 -8.1524 4.9159 25 1 5.7137 -9.1653 4.5084 26 6 4.2518 -7.5614 2.6978 27 8 4.6303 -5.5628 1.2224 28 7 2.2953 -1.1025 -0.0052 29 1 1.9833 -2.0210 -0.0105 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.9544 2.1268 -0.0011 34 1 5.1428 1.7719 -1.0274 35 1 4.6220 2.4934 0.5141 36 1 5.6644 1.0505 0.5139 37 1 3.7334 -3.3011 -0.0014 38 1 6.3959 -3.6053 0.8905 39 1 6.3971 -3.6045 -0.8894 40 1 7.4367 -5.6983 0.4123 41 1 6.7696 -6.5612 -1.0093 42 1 6.8012 -7.4591 1.7705 43 1 6.1103 -8.3118 0.3546 44 1 3.8267 -8.2784 -0.1693 45 1 2.6309 -7.2607 0.7420 46 1 2.8030 -12.2989 3.0693 47 1 3.4909 -6.9559 3.1903 48 1 5.0677 -7.8397 3.3649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053618472.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:56 Heat of formation + Delta-G solvation = 19.409566 kcal Electronic energy + Delta-G solvation = -28613.208578 eV Core-core repulsion = 24670.741079 eV Total energy + Delta-G solvation = -3942.467499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.67957 -40.41303 -39.19265 -37.03259 -34.83774 -32.94945 -32.42125 -32.22273 -31.78397 -29.66508 -27.98495 -27.43047 -26.27747 -25.65131 -23.84251 -21.69394 -21.46529 -21.28296 -20.68948 -19.44500 -19.20819 -18.51257 -17.51591 -16.69035 -16.09724 -15.91625 -15.60008 -15.53505 -14.93038 -14.80265 -14.51215 -14.11313 -13.75511 -13.62537 -13.42432 -13.32659 -13.19106 -13.08554 -13.01865 -12.93707 -12.55142 -12.39179 -12.26424 -12.02866 -11.71616 -11.61058 -11.59370 -11.33014 -11.10444 -10.74246 -10.50220 -10.39042 -10.09909 -9.76299 -9.35688 -9.30178 -9.02498 -9.01033 -8.94131 -8.24409 -7.24578 -6.40053 -3.31975 1.22363 2.42635 2.77004 2.92653 3.20785 3.36931 3.40057 3.59634 3.79137 4.47427 4.49621 4.52851 4.59611 4.64781 4.74132 4.80518 4.85022 4.92545 4.96221 5.10078 5.13483 5.18487 5.30919 5.35553 5.41714 5.47363 5.52383 5.53860 5.67202 5.69888 5.72868 5.84864 5.94286 6.07650 6.09054 6.13359 6.16607 6.18822 6.23252 6.25963 6.28897 6.46741 6.52052 6.71654 6.97090 7.08794 7.16502 7.31293 7.99276 8.15121 8.88874 9.40939 10.25347 11.12571 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.002575 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.251719 B =10870.926656 C =11760.568600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.055 3.945 3 C -0.211 4.211 4 C -0.071 4.071 5 C -0.090 4.090 6 C -0.061 4.061 7 C 0.590 3.410 8 O -0.531 6.531 9 N -0.725 5.725 10 C 0.130 3.870 11 C 0.061 3.939 12 H 0.074 0.926 13 C -0.145 4.145 14 C -0.114 4.114 15 C 0.059 3.941 16 C 0.111 3.889 17 N -0.619 5.619 18 C -0.305 4.305 19 H 0.084 0.916 20 C -0.022 4.022 21 N -0.931 5.931 22 Si 1.068 2.932 23 H -0.293 1.293 24 H -0.285 1.285 25 H -0.292 1.292 26 C 0.115 3.885 27 O -0.356 6.356 28 N -0.537 5.537 29 H 0.416 0.584 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.142 0.858 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.398 0.602 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.047 0.953 45 H 0.043 0.957 46 H 0.261 0.739 47 H 0.053 0.947 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 24.210 -11.140 26.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.063 4.063 3 C -0.235 4.235 4 C -0.080 4.080 5 C -0.147 4.147 6 C -0.173 4.173 7 C 0.378 3.622 8 O -0.408 6.408 9 N -0.377 5.377 10 C 0.007 3.993 11 C 0.003 3.997 12 H 0.092 0.908 13 C -0.183 4.183 14 C -0.152 4.152 15 C 0.019 3.981 16 C -0.016 4.016 17 N -0.349 5.349 18 C -0.431 4.431 19 H 0.102 0.898 20 C -0.221 4.221 21 N -0.573 5.573 22 Si 0.900 3.100 23 H -0.220 1.220 24 H -0.212 1.212 25 H -0.220 1.220 26 C -0.011 4.011 27 O -0.274 6.274 28 N -0.134 5.134 29 H 0.253 0.747 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.160 0.840 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.232 0.768 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.099 24.290 -9.329 26.043 hybrid contribution -1.104 -0.958 -1.795 2.315 sum -0.006 23.332 -11.124 25.848 Atomic orbital electron populations 1.20435 0.87601 1.03794 1.03064 1.20541 0.93690 0.86199 1.05825 1.20570 0.91795 0.97941 1.13192 1.19935 0.95513 0.91014 1.01497 1.20343 0.94677 0.97533 1.02142 1.20142 0.82832 0.94164 1.20150 1.17024 0.87554 0.81242 0.76413 1.90805 1.24173 1.75089 1.50710 1.45804 1.10264 1.05690 1.75897 1.21509 0.87789 0.86785 1.03249 1.23225 0.93626 0.93536 0.89314 0.90814 1.22945 0.97933 0.96309 1.01103 1.22337 0.94781 0.98358 0.99743 1.23659 0.95296 0.79356 0.99839 1.22662 0.95456 0.90583 0.92896 1.45748 1.74961 1.04784 1.09410 1.20080 1.44943 0.81574 0.96518 0.89792 1.25745 0.99497 0.99663 0.97220 1.70932 1.43782 1.08289 1.34250 0.83732 0.75816 0.74400 0.76047 1.22030 1.21216 1.22041 1.22681 0.96729 0.88587 0.93056 1.88946 1.75114 1.22635 1.40662 1.41910 1.05448 1.08542 1.57529 0.74700 0.90572 0.91321 0.89710 0.84028 0.91593 0.92044 0.90111 0.76810 0.90297 0.89971 0.90303 0.90243 0.90337 0.89616 0.93502 0.93954 0.92842 0.92896 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 10.41 36.01 0.37 -0.09 16 2 C 0.06 0.46 7.13 -81.95 -0.58 -0.13 16 3 C -0.21 -1.98 10.66 -39.98 -0.43 -2.40 16 4 C -0.07 -0.80 6.21 -104.16 -0.65 -1.45 16 5 C -0.09 -0.92 9.83 36.00 0.35 -0.57 16 6 C -0.06 -0.70 7.06 -81.98 -0.58 -1.28 16 7 C 0.59 7.51 7.79 -12.85 -0.10 7.41 16 8 O -0.53 -8.17 14.80 5.19 0.08 -8.09 16 9 N -0.73 -7.88 5.51 -61.62 -0.34 -8.22 16 10 C 0.13 1.42 5.28 -4.04 -0.02 1.40 16 11 C 0.06 0.71 3.35 -25.92 -0.09 0.62 16 12 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.14 -1.61 6.65 -24.98 -0.17 -1.78 16 14 C -0.11 -1.71 6.50 -25.62 -0.17 -1.88 16 15 C 0.06 1.03 1.39 -91.01 -0.13 0.90 16 16 C 0.11 2.14 8.18 -7.86 -0.06 2.08 16 17 N -0.62 -14.99 3.68 -184.90 -0.68 -15.67 16 18 C -0.31 -8.65 11.08 -15.06 -0.17 -8.82 16 19 H 0.08 2.49 8.05 -52.48 -0.42 2.07 16 20 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 21 N -0.93 -29.06 13.70 55.49 0.76 -28.30 16 22 Si 1.07 26.64 25.13 -169.99 -4.27 22.36 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -6.71 6.10 56.52 0.34 -6.36 16 25 H -0.29 -6.86 6.63 56.52 0.37 -6.48 16 26 C 0.11 2.46 5.28 -7.71 -0.04 2.42 16 27 O -0.36 -5.41 11.12 -35.23 -0.39 -5.81 16 28 N -0.54 -4.71 5.99 -5.70 -0.03 -4.74 16 29 H 0.42 2.69 8.19 -40.82 -0.33 2.35 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.97 6.48 -51.93 -0.34 0.63 16 37 H 0.40 3.68 7.60 -40.82 -0.31 3.37 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.79 7.87 -51.93 -0.41 0.39 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 43 H 0.09 1.34 7.92 -51.93 -0.41 0.93 16 44 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 45 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.26 8.04 8.73 -40.82 -0.36 7.68 16 47 H 0.05 1.15 7.67 -51.93 -0.40 0.75 16 48 H 0.06 1.25 4.69 -51.93 -0.24 1.01 16 LS Contribution 384.95 15.07 5.80 5.80 Total: -1.00 -34.64 384.95 -9.21 -43.86 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.59 Total: 3.12 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.54 Total: -4.31 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.29 Total: -56.93 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.31 Total: -13.90 kcal Atomic # 14 Polarization: 26.64 SS G_CDS: -4.27 Total: 22.36 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.64 -9.21 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053618472.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.266 kcal (2) G-P(sol) polarization free energy of solvation -34.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds