Wall clock time and date at job start Tue Mar 31 2020 17:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38093 * 119.58522 * 2 1 4 4 C 1.38778 * 119.28874 * 180.27870 * 3 2 1 5 5 C 1.50699 * 120.75902 * 179.71840 * 4 3 2 6 6 C 1.38431 * 118.48720 * 359.45930 * 4 3 2 7 7 C 1.50692 * 120.44565 * 180.28836 * 6 4 3 8 8 C 1.50707 * 109.46955 * 270.27683 * 7 6 4 9 9 O 1.21278 * 120.00210 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99752 * 180.02562 * 8 7 6 11 11 C 1.47432 * 125.64616 * 179.71622 * 10 8 7 12 12 C 1.55129 * 104.72055 * 155.81320 * 11 10 8 13 13 H 1.08996 * 111.18978 * 279.18581 * 12 11 10 14 14 C 1.53006 * 110.93599 * 155.29116 * 12 11 10 15 15 C 1.55153 * 101.48837 * 37.29582 * 12 11 10 16 16 H 1.08992 * 110.87173 * 205.89627 * 15 12 11 17 17 N 1.46502 * 110.72205 * 82.69405 * 15 12 11 18 18 C 1.36928 * 119.99921 * 160.02434 * 17 15 12 19 19 H 1.08006 * 120.00683 * 359.97438 * 18 17 15 20 20 C 1.38820 * 120.00213 * 180.02562 * 18 17 15 21 21 N 1.31613 * 120.00238 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99463 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47167 * 90.00372 * 22 20 18 24 24 H 1.48497 * 109.47035 * 209.99970 * 22 20 18 25 25 H 1.48497 * 109.47325 * 330.00007 * 22 20 18 26 26 C 1.47023 * 125.65468 * 0.02562 * 10 8 7 27 27 C 1.38880 * 119.10606 * 0.55611 * 6 4 3 28 28 O 1.35678 * 119.67620 * 179.68042 * 27 6 4 29 29 N 1.31934 * 119.58273 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.47516 * 90.00474 * 1 2 3 31 31 H 1.09004 * 109.46949 * 210.00468 * 1 2 3 32 32 H 1.08997 * 109.47428 * 329.99770 * 1 2 3 33 33 H 1.08002 * 120.35163 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.47108 * 89.99780 * 5 4 3 35 35 H 1.09000 * 109.47544 * 209.99941 * 5 4 3 36 36 H 1.09001 * 109.47122 * 329.99682 * 5 4 3 37 37 H 1.09004 * 109.47600 * 30.27269 * 7 6 4 38 38 H 1.09001 * 109.47367 * 150.27546 * 7 6 4 39 39 H 1.08998 * 110.36350 * 274.74582 * 11 10 8 40 40 H 1.09000 * 110.36531 * 37.06360 * 11 10 8 41 41 H 1.09002 * 109.47018 * 307.95287 * 14 12 11 42 42 H 1.08994 * 109.47215 * 67.95182 * 14 12 11 43 43 H 1.08998 * 109.46781 * 187.95905 * 14 12 11 44 44 H 0.96999 * 119.99945 * 340.02591 * 17 15 12 45 45 H 0.97001 * 120.00195 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.88068 * 300.44825 * 26 10 8 47 47 H 1.09001 * 109.87764 * 61.44944 * 26 10 8 48 48 H 0.96699 * 113.99987 * 270.01861 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5765 1.1937 -0.0059 5 6 4.3538 2.4847 -0.0124 6 6 4.2305 -0.0264 -0.0001 7 6 5.7362 -0.0856 0.0004 8 6 6.2386 -0.1051 -1.4203 9 8 5.4515 -0.0744 -2.3424 10 7 7.5627 -0.1577 -1.6661 11 6 8.1883 -0.1881 -3.0008 12 6 9.6176 0.3726 -2.7790 13 1 9.6124 1.4620 -2.7435 14 6 10.5769 -0.1334 -3.8583 15 6 9.9734 -0.2274 -1.3931 16 1 10.7095 0.3910 -0.8796 17 7 10.4609 -1.6018 -1.5330 18 6 11.2006 -2.1712 -0.5312 19 1 11.4250 -1.6069 0.3620 20 6 11.6630 -3.4733 -0.6639 21 7 12.3736 -4.0207 0.2993 22 14 11.2755 -4.4490 -2.2089 23 1 12.3465 -4.2302 -3.2142 24 1 11.1977 -5.8940 -1.8753 25 1 9.9746 -3.9987 -2.7655 26 6 8.6223 -0.2007 -0.6478 27 6 3.4802 -1.1950 -0.0004 28 8 4.1092 -2.3972 -0.0014 29 7 2.1583 -1.1474 -0.0005 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.6477 2.1356 -0.0004 34 1 4.5456 2.7986 1.0136 35 1 5.3015 2.3356 -0.5299 36 1 3.7767 3.2538 -0.5258 37 1 6.1342 0.7894 0.5145 38 1 6.0642 -0.9893 0.5142 39 1 8.2332 -1.2106 -3.3754 40 1 7.6355 0.4466 -3.6934 41 1 10.5130 -1.2197 -3.9210 42 1 10.3049 0.3026 -4.8195 43 1 11.5962 0.1564 -3.6032 44 1 10.2597 -2.1085 -2.3353 45 1 12.6970 -4.9305 0.2064 46 1 8.5652 0.6855 -0.0157 47 1 8.5145 -1.0980 -0.0384 48 1 4.2915 -2.7450 -0.8851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055001661.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:21 Heat of formation + Delta-G solvation = -28.970460 kcal Electronic energy + Delta-G solvation = -29338.693844 eV Core-core repulsion = 25394.128430 eV Total energy + Delta-G solvation = -3944.565414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.01314 -39.79618 -37.82910 -37.30732 -34.89700 -34.11446 -32.60676 -32.01584 -30.94651 -30.34706 -28.21146 -27.94920 -26.91620 -25.26301 -23.69891 -22.84585 -22.09409 -21.05509 -19.54977 -18.98815 -18.38676 -17.95228 -17.39048 -16.90140 -16.13032 -15.68696 -15.56586 -14.97343 -14.60648 -14.40360 -14.30624 -14.02456 -13.71670 -13.50761 -13.30715 -13.21281 -13.10357 -12.83479 -12.76621 -12.51311 -12.32025 -12.26335 -12.02919 -11.97840 -11.80597 -11.69853 -11.57474 -11.52442 -11.10720 -10.90244 -10.62789 -10.37925 -10.07737 -9.88644 -9.66227 -9.54766 -9.48101 -9.09275 -8.72661 -8.42474 -7.42946 -5.88297 -3.25631 0.86227 1.07417 2.72225 3.10723 3.29645 3.31948 3.35722 3.39150 3.70637 4.32261 4.41030 4.48898 4.57831 4.70499 4.73236 4.95107 4.99677 5.02056 5.08281 5.17110 5.18137 5.24095 5.27086 5.30810 5.36602 5.48824 5.52546 5.57597 5.58091 5.65609 5.72681 5.74617 5.85424 5.90391 5.94116 6.00492 6.10127 6.13048 6.18948 6.33030 6.41011 6.44924 6.57492 6.61487 7.42496 7.70603 7.85609 7.85933 8.26554 8.30429 9.07286 9.79763 9.97959 11.29403 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.003098 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.469544 B = 9034.843407 C = 9822.411195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.148 3.852 3 C -0.185 4.185 4 C -0.012 4.012 5 C -0.118 4.118 6 C -0.132 4.132 7 C -0.094 4.094 8 C 0.530 3.470 9 O -0.552 6.552 10 N -0.607 5.607 11 C 0.113 3.887 12 C -0.116 4.116 13 H 0.085 0.915 14 C -0.133 4.133 15 C 0.179 3.821 16 H 0.080 0.920 17 N -0.737 5.737 18 C -0.251 4.251 19 H 0.093 0.907 20 C 0.011 3.989 21 N -0.928 5.928 22 Si 0.879 3.121 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.278 1.278 26 C 0.068 3.932 27 C 0.333 3.667 28 O -0.480 6.480 29 N -0.508 5.508 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.065 0.935 44 H 0.364 0.636 45 H 0.261 0.739 46 H 0.060 0.940 47 H 0.082 0.918 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.318 14.363 -2.464 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.011 3.989 3 C -0.205 4.205 4 C -0.020 4.020 5 C -0.174 4.174 6 C -0.136 4.136 7 C -0.134 4.134 8 C 0.318 3.682 9 O -0.431 6.431 10 N -0.340 5.340 11 C -0.009 4.009 12 C -0.136 4.136 13 H 0.103 0.897 14 C -0.191 4.191 15 C 0.067 3.933 16 H 0.098 0.902 17 N -0.379 5.379 18 C -0.381 4.381 19 H 0.111 0.889 20 C -0.185 4.185 21 N -0.575 5.575 22 Si 0.709 3.291 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.204 1.204 26 C -0.057 4.057 27 C 0.154 3.846 28 O -0.288 6.288 29 N -0.228 5.228 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.154 0.846 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.198 0.802 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.100 0.900 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -18.087 13.537 -2.107 22.690 hybrid contribution 0.361 -0.390 -1.424 1.520 sum -17.725 13.147 -3.531 22.349 Atomic orbital electron populations 1.20720 0.88633 1.03475 1.03174 1.20951 0.96656 0.87244 0.94073 1.21750 0.93855 0.99276 1.05643 1.20040 0.93686 0.94802 0.93472 1.20856 1.00258 0.93478 1.02857 1.20158 0.95568 0.92839 1.04990 1.20502 0.91390 1.06144 0.95386 1.20071 0.80803 0.76437 0.90854 1.90684 1.54650 1.51346 1.46420 1.48482 1.04997 1.71699 1.08849 1.22304 0.92844 1.00974 0.84780 1.22690 0.93774 1.00069 0.97064 0.89713 1.21568 0.99335 1.01542 0.96648 1.21158 0.91933 0.87755 0.92455 0.90244 1.42809 1.63523 1.10618 1.20978 1.19033 1.24715 0.96677 0.97651 0.88939 1.24652 0.99625 0.96937 0.97317 1.69683 1.40278 1.14994 1.32555 0.86648 0.78048 0.80250 0.84123 1.20882 1.21597 1.20406 1.23292 0.89146 1.01620 0.91667 1.18843 0.86538 0.85024 0.94154 1.84707 1.76448 1.33432 1.34195 1.66976 1.09539 1.30690 1.15567 0.90310 0.90417 0.90578 0.84592 0.90150 0.90919 0.90718 0.87762 0.86859 0.91664 0.91088 0.92297 0.93207 0.91550 0.80193 0.92883 0.92206 0.89952 0.73857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.17 36.00 0.37 -0.46 16 2 C 0.15 1.76 6.78 -82.61 -0.56 1.20 16 3 C -0.19 -1.96 9.44 -39.43 -0.37 -2.33 16 4 C -0.01 -0.14 5.91 -104.35 -0.62 -0.76 16 5 C -0.12 -1.03 9.27 36.01 0.33 -0.70 16 6 C -0.13 -1.78 4.40 -104.32 -0.46 -2.24 16 7 C -0.09 -1.20 4.15 -29.04 -0.12 -1.32 16 8 C 0.53 8.06 7.51 -10.98 -0.08 7.98 16 9 O -0.55 -9.94 16.29 5.56 0.09 -9.85 16 10 N -0.61 -9.12 3.32 -170.38 -0.57 -9.69 16 11 C 0.11 1.67 6.36 -2.41 -0.02 1.66 16 12 C -0.12 -1.58 3.53 -88.35 -0.31 -1.89 16 13 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.13 -1.81 8.85 37.16 0.33 -1.48 16 15 C 0.18 2.94 3.37 -66.10 -0.22 2.71 16 16 H 0.08 1.29 8.12 -51.93 -0.42 0.87 16 17 N -0.74 -15.52 4.42 -51.66 -0.23 -15.75 16 18 C -0.25 -6.48 10.46 -15.06 -0.16 -6.64 16 19 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 20 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 21 N -0.93 -27.91 13.97 55.49 0.78 -27.14 16 22 Si 0.88 21.22 27.73 -169.99 -4.71 16.50 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 26 C 0.07 1.03 6.22 -3.07 -0.02 1.01 16 27 C 0.33 4.97 7.72 -17.12 -0.13 4.84 16 28 O -0.48 -6.95 12.62 -18.74 -0.24 -7.19 16 29 N -0.51 -7.47 10.30 -9.55 -0.10 -7.57 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.71 6.56 -51.93 -0.34 0.36 16 36 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 37 H 0.10 1.09 6.83 -51.93 -0.35 0.74 16 38 H 0.11 1.49 7.55 -51.93 -0.39 1.10 16 39 H 0.07 1.05 7.99 -51.93 -0.41 0.64 16 40 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 41 H 0.06 0.91 6.38 -51.93 -0.33 0.58 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.36 7.75 3.96 -40.82 -0.16 7.59 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 48 H 0.40 4.68 9.06 45.56 0.41 5.09 16 LS Contribution 389.16 15.07 5.86 5.86 Total: -1.00 -33.63 389.16 -7.90 -41.54 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -6.65 Total: 11.49 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.14 Total: 1.78 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.12 Total: -60.14 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.15 Total: -17.04 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.63 -7.90 -41.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055001661.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.566 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds