Wall clock time and date at job start Tue Mar 31 2020 17:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38093 * 119.58522 * 2 1 4 4 C 1.38778 * 119.28874 * 180.27870 * 3 2 1 5 5 C 1.50699 * 120.75902 * 179.71840 * 4 3 2 6 6 C 1.38431 * 118.48720 * 359.45930 * 4 3 2 7 7 C 1.50692 * 120.44565 * 180.28836 * 6 4 3 8 8 C 1.50707 * 109.46955 * 270.27683 * 7 6 4 9 9 O 1.21278 * 120.00210 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99752 * 180.02562 * 8 7 6 11 11 C 1.47432 * 125.64616 * 179.71622 * 10 8 7 12 12 C 1.55129 * 104.72055 * 155.81320 * 11 10 8 13 13 H 1.08996 * 111.18978 * 279.18581 * 12 11 10 14 14 C 1.53006 * 110.93599 * 155.29116 * 12 11 10 15 15 C 1.55153 * 101.48837 * 37.29582 * 12 11 10 16 16 H 1.08992 * 110.87173 * 205.89627 * 15 12 11 17 17 N 1.46502 * 110.72205 * 82.69405 * 15 12 11 18 18 C 1.36928 * 119.99921 * 160.02434 * 17 15 12 19 19 H 1.08006 * 120.00683 * 359.97438 * 18 17 15 20 20 C 1.38820 * 120.00213 * 180.02562 * 18 17 15 21 21 N 1.31613 * 120.00238 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99463 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47167 * 90.00372 * 22 20 18 24 24 H 1.48497 * 109.47035 * 209.99970 * 22 20 18 25 25 H 1.48497 * 109.47325 * 330.00007 * 22 20 18 26 26 C 1.47023 * 125.65468 * 0.02562 * 10 8 7 27 27 C 1.38880 * 119.10606 * 0.55611 * 6 4 3 28 28 O 1.35678 * 119.67620 * 179.68042 * 27 6 4 29 29 N 1.31934 * 119.58273 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.47516 * 90.00474 * 1 2 3 31 31 H 1.09004 * 109.46949 * 210.00468 * 1 2 3 32 32 H 1.08997 * 109.47428 * 329.99770 * 1 2 3 33 33 H 1.08002 * 120.35163 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.47108 * 89.99780 * 5 4 3 35 35 H 1.09000 * 109.47544 * 209.99941 * 5 4 3 36 36 H 1.09001 * 109.47122 * 329.99682 * 5 4 3 37 37 H 1.09004 * 109.47600 * 30.27269 * 7 6 4 38 38 H 1.09001 * 109.47367 * 150.27546 * 7 6 4 39 39 H 1.08998 * 110.36350 * 274.74582 * 11 10 8 40 40 H 1.09000 * 110.36531 * 37.06360 * 11 10 8 41 41 H 1.09002 * 109.47018 * 307.95287 * 14 12 11 42 42 H 1.08994 * 109.47215 * 67.95182 * 14 12 11 43 43 H 1.08998 * 109.46781 * 187.95905 * 14 12 11 44 44 H 0.96999 * 119.99945 * 340.02591 * 17 15 12 45 45 H 0.97001 * 120.00195 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.88068 * 300.44825 * 26 10 8 47 47 H 1.09001 * 109.87764 * 61.44944 * 26 10 8 48 48 H 0.96699 * 113.99987 * 270.01861 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5765 1.1937 -0.0059 5 6 4.3538 2.4847 -0.0124 6 6 4.2305 -0.0264 -0.0001 7 6 5.7362 -0.0856 0.0004 8 6 6.2386 -0.1051 -1.4203 9 8 5.4515 -0.0744 -2.3424 10 7 7.5627 -0.1577 -1.6661 11 6 8.1883 -0.1881 -3.0008 12 6 9.6176 0.3726 -2.7790 13 1 9.6124 1.4620 -2.7435 14 6 10.5769 -0.1334 -3.8583 15 6 9.9734 -0.2274 -1.3931 16 1 10.7095 0.3910 -0.8796 17 7 10.4609 -1.6018 -1.5330 18 6 11.2006 -2.1712 -0.5312 19 1 11.4250 -1.6069 0.3620 20 6 11.6630 -3.4733 -0.6639 21 7 12.3736 -4.0207 0.2993 22 14 11.2755 -4.4490 -2.2089 23 1 12.3465 -4.2302 -3.2142 24 1 11.1977 -5.8940 -1.8753 25 1 9.9746 -3.9987 -2.7655 26 6 8.6223 -0.2007 -0.6478 27 6 3.4802 -1.1950 -0.0004 28 8 4.1092 -2.3972 -0.0014 29 7 2.1583 -1.1474 -0.0005 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.6477 2.1356 -0.0004 34 1 4.5456 2.7986 1.0136 35 1 5.3015 2.3356 -0.5299 36 1 3.7767 3.2538 -0.5258 37 1 6.1342 0.7894 0.5145 38 1 6.0642 -0.9893 0.5142 39 1 8.2332 -1.2106 -3.3754 40 1 7.6355 0.4466 -3.6934 41 1 10.5130 -1.2197 -3.9210 42 1 10.3049 0.3026 -4.8195 43 1 11.5962 0.1564 -3.6032 44 1 10.2597 -2.1085 -2.3353 45 1 12.6970 -4.9305 0.2064 46 1 8.5652 0.6855 -0.0157 47 1 8.5145 -1.0980 -0.0384 48 1 4.2915 -2.7450 -0.8851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001055001661.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:20 Heat of formation + Delta-G solvation = -54.249413 kcal Electronic energy + Delta-G solvation = -29339.790022 eV Core-core repulsion = 25394.128430 eV Total energy + Delta-G solvation = -3945.661592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.98760 -40.97773 -39.10625 -38.31619 -35.85008 -35.74027 -34.03920 -32.96722 -32.62133 -31.24966 -29.65457 -28.72090 -27.89980 -26.27161 -25.47525 -23.86821 -23.36168 -21.94683 -20.89002 -20.17117 -19.79797 -19.39489 -18.34290 -18.11874 -17.40159 -16.72568 -16.62602 -16.39834 -16.02954 -15.78762 -15.46205 -15.14728 -14.67134 -14.64177 -14.45821 -14.32540 -14.07906 -13.88599 -13.83621 -13.61213 -13.48924 -13.22998 -13.19302 -13.02336 -12.96133 -12.86084 -12.83059 -12.56821 -12.49505 -12.38345 -12.08838 -11.95034 -11.61177 -11.40045 -11.15101 -10.96574 -10.47520 -10.38365 -9.69675 -9.64703 -9.31044 -8.01061 -5.33158 -0.06058 0.18270 1.35899 1.37304 1.43987 1.53004 1.98312 2.41169 2.47352 2.78969 3.29335 3.41796 3.43495 3.58001 3.65862 3.81202 3.83458 3.86087 3.88687 4.02853 4.23374 4.37029 4.38404 4.41127 4.53722 4.58978 4.60251 4.63735 4.68060 4.71651 4.78345 4.79720 4.82470 4.96624 4.98399 4.99707 5.09084 5.19174 5.20022 5.23258 5.29828 5.30919 5.47650 5.62613 5.81799 6.23553 6.43064 6.50526 6.93307 7.06501 7.09942 7.85818 8.02159 9.20148 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.003098 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.469544 B = 9034.843407 C = 9822.411195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.133 3.867 3 C -0.181 4.181 4 C -0.018 4.018 5 C -0.116 4.116 6 C -0.149 4.149 7 C -0.085 4.085 8 C 0.532 3.468 9 O -0.581 6.581 10 N -0.608 5.608 11 C 0.111 3.889 12 C -0.099 4.099 13 H 0.117 0.883 14 C -0.133 4.133 15 C 0.166 3.834 16 H 0.087 0.913 17 N -0.740 5.740 18 C -0.218 4.218 19 H 0.070 0.930 20 C -0.058 4.058 21 N -0.981 5.981 22 Si 0.938 3.062 23 H -0.276 1.276 24 H -0.303 1.303 25 H -0.262 1.262 26 C 0.078 3.922 27 C 0.303 3.697 28 O -0.495 6.495 29 N -0.541 5.541 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.174 0.826 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.131 0.869 38 H 0.104 0.896 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.364 0.636 45 H 0.255 0.745 46 H 0.095 0.905 47 H 0.056 0.944 48 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.909 17.676 -3.439 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.004 4.004 3 C -0.200 4.200 4 C -0.026 4.026 5 C -0.172 4.172 6 C -0.153 4.153 7 C -0.125 4.125 8 C 0.322 3.678 9 O -0.462 6.462 10 N -0.340 5.340 11 C -0.011 4.011 12 C -0.118 4.118 13 H 0.135 0.865 14 C -0.191 4.191 15 C 0.056 3.944 16 H 0.104 0.896 17 N -0.383 5.383 18 C -0.349 4.349 19 H 0.088 0.912 20 C -0.250 4.250 21 N -0.632 5.632 22 Si 0.767 3.233 23 H -0.202 1.202 24 H -0.230 1.230 25 H -0.187 1.187 26 C -0.048 4.048 27 C 0.125 3.875 28 O -0.303 6.303 29 N -0.261 5.261 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.191 0.809 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.149 0.851 38 H 0.122 0.878 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.198 0.802 45 H 0.064 0.936 46 H 0.113 0.887 47 H 0.074 0.926 48 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -19.706 16.907 -3.110 26.150 hybrid contribution 0.760 -1.278 -1.098 1.848 sum -18.946 15.629 -4.208 24.918 Atomic orbital electron populations 1.20828 0.86156 1.04622 1.04089 1.21674 0.98415 0.87089 0.93194 1.22179 0.93696 1.00275 1.03867 1.20494 0.94551 0.95230 0.92319 1.20931 0.99604 0.92323 1.04319 1.20276 0.95707 0.93268 1.06042 1.20457 0.91383 1.06819 0.93822 1.20426 0.80446 0.75494 0.91469 1.90666 1.55271 1.52704 1.47543 1.48533 1.05041 1.71467 1.08947 1.22338 0.93678 1.00258 0.84873 1.22658 0.92686 1.01565 0.94903 0.86517 1.21572 0.99233 1.00251 0.98051 1.21464 0.92516 0.85451 0.94951 0.89559 1.42829 1.63204 1.12504 1.19799 1.19045 1.22579 0.95953 0.97354 0.91192 1.25320 1.00949 0.98489 1.00228 1.69842 1.43117 1.15208 1.34997 0.85665 0.78648 0.77972 0.80966 1.20211 1.23003 1.18702 1.23084 0.88143 1.02090 0.91446 1.19147 0.87119 0.85369 0.95820 1.84671 1.76687 1.34066 1.34918 1.66981 1.09716 1.32539 1.16900 0.89358 0.91139 0.87568 0.80886 0.88016 0.91847 0.88855 0.85134 0.87790 0.93511 0.90141 0.94498 0.90533 0.91763 0.80198 0.93557 0.88699 0.92557 0.73316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 10.17 71.23 0.72 -0.68 16 2 C 0.13 2.98 6.78 42.51 0.29 3.27 16 3 C -0.18 -3.33 9.44 22.36 0.21 -3.12 16 4 C -0.02 -0.38 5.91 -19.69 -0.12 -0.50 16 5 C -0.12 -1.61 9.27 71.24 0.66 -0.95 16 6 C -0.15 -3.92 4.40 -19.67 -0.09 -4.01 16 7 C -0.08 -2.09 4.15 29.10 0.12 -1.96 16 8 C 0.53 15.56 7.51 87.66 0.66 16.22 16 9 O -0.58 -20.47 16.29 -3.02 -0.05 -20.52 16 10 N -0.61 -17.17 3.32 -811.34 -2.70 -19.86 16 11 C 0.11 3.04 6.36 86.93 0.55 3.59 16 12 C -0.10 -2.39 3.53 -9.32 -0.03 -2.42 16 13 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 14 C -0.13 -3.27 8.85 71.98 0.64 -2.63 16 15 C 0.17 5.12 3.37 46.18 0.16 5.27 16 16 H 0.09 2.60 8.12 -2.39 -0.02 2.58 16 17 N -0.74 -30.59 4.42 -317.34 -1.40 -31.99 16 18 C -0.22 -11.34 10.46 84.04 0.88 -10.46 16 19 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 20 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 21 N -0.98 -60.88 13.97 21.65 0.30 -60.58 16 22 Si 0.94 44.58 27.73 68.60 1.90 46.48 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 25 H -0.26 -11.52 6.52 99.48 0.65 -10.87 16 26 C 0.08 2.18 6.22 86.73 0.54 2.72 16 27 C 0.30 9.22 7.72 84.78 0.65 9.88 16 28 O -0.49 -15.10 12.62 -89.96 -1.14 -16.23 16 29 N -0.54 -16.04 10.30 -296.98 -3.06 -19.10 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.11 0.82 8.08 -2.39 -0.02 0.80 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.02 6.56 -2.39 -0.02 1.01 16 36 H 0.09 0.97 8.10 -2.39 -0.02 0.95 16 37 H 0.13 2.42 6.83 -2.39 -0.02 2.40 16 38 H 0.10 2.75 7.55 -2.39 -0.02 2.73 16 39 H 0.05 1.46 7.99 -2.39 -0.02 1.44 16 40 H 0.08 2.08 8.03 -2.39 -0.02 2.06 16 41 H 0.04 1.07 6.38 -2.39 -0.02 1.05 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.36 15.14 3.96 -92.71 -0.37 14.77 16 45 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 46 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.06 1.91 8.05 -2.39 -0.02 1.89 16 48 H 0.41 10.32 9.06 -74.06 -0.67 9.65 16 Total: -1.00 -75.69 389.16 0.06 -75.62 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.11 Total: 34.78 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 6.31 Total: 11.40 kcal Atomic # 7 Polarization: -124.67 SS G_CDS: -6.86 Total: -131.53 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.18 Total: -36.76 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.48 kcal Total: -75.69 0.06 -75.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055001661.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.376 kcal (2) G-P(sol) polarization free energy of solvation -75.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds