Wall clock time and date at job start Tue Mar 31 2020 18:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39841 * 126.45521 * 2 1 4 4 C 1.35452 * 107.86506 * 179.86650 * 3 2 1 5 5 N 1.35539 * 108.87148 * 0.39440 * 4 3 2 6 6 H 0.96996 * 125.68294 * 179.75294 * 5 4 3 7 7 C 1.37652 * 108.64401 * 359.75207 * 5 4 3 8 8 C 1.46675 * 126.23783 * 179.97438 * 7 5 4 9 9 O 1.21690 * 120.00408 * 150.53038 * 8 7 5 10 10 N 1.34775 * 119.99591 * 330.53535 * 8 7 5 11 11 C 1.47164 * 121.07087 * 185.40836 * 10 8 7 12 12 C 1.53281 * 108.56367 * 128.76361 * 11 10 8 13 13 H 1.09003 * 109.50995 * 292.99458 * 12 11 10 14 14 C 1.53002 * 109.51210 * 172.90268 * 12 11 10 15 15 O 1.43130 * 109.23489 * 52.97352 * 12 11 10 16 16 C 1.41894 * 114.36310 * 299.10887 * 15 12 11 17 17 C 1.54343 * 110.75978 * 183.36837 * 16 15 12 18 18 C 1.54466 * 102.87132 * 83.67614 * 17 16 15 19 19 N 1.47077 * 107.29661 * 21.48088 * 18 17 16 20 20 C 1.36941 * 125.62437 * 180.96759 * 19 18 17 21 21 H 1.08006 * 119.99224 * 185.36057 * 20 19 18 22 22 C 1.38812 * 120.00251 * 5.36277 * 20 19 18 23 23 N 1.31613 * 119.99962 * 352.05257 * 22 20 19 24 24 Si 1.86800 * 119.99830 * 172.05227 * 22 20 19 25 25 H 1.48498 * 109.47096 * 94.98202 * 24 22 20 26 26 H 1.48502 * 109.46835 * 214.98067 * 24 22 20 27 27 H 1.48499 * 109.47107 * 334.98197 * 24 22 20 28 28 C 1.47561 * 108.74603 * 1.00516 * 19 18 17 29 29 C 1.47330 * 121.07564 * 5.13170 * 10 8 7 30 30 H 1.08992 * 109.47411 * 269.69000 * 1 2 3 31 31 H 1.09006 * 109.46586 * 149.69319 * 1 2 3 32 32 H 1.09005 * 109.47193 * 29.69581 * 1 2 3 33 33 H 1.07996 * 126.06419 * 359.97274 * 3 2 1 34 34 H 1.07990 * 125.56895 * 180.15243 * 4 3 2 35 35 H 1.09000 * 109.62118 * 248.48216 * 11 10 8 36 36 H 1.09000 * 109.61953 * 9.03969 * 11 10 8 37 37 H 1.09000 * 109.46923 * 59.99640 * 14 12 11 38 38 H 1.08998 * 109.47319 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.46833 * 300.00343 * 14 12 11 40 40 H 1.08998 * 110.73370 * 202.02597 * 17 16 15 41 41 H 1.09007 * 110.73451 * 325.33187 * 17 16 15 42 42 H 1.08997 * 109.87777 * 262.05109 * 18 17 16 43 43 H 1.09000 * 110.00180 * 140.97382 * 18 17 16 44 44 H 0.96996 * 119.99914 * 180.02562 * 23 22 20 45 45 H 1.08997 * 110.37890 * 217.86285 * 28 19 18 46 46 H 1.09001 * 110.47757 * 95.55682 * 28 19 18 47 47 H 1.08991 * 109.67543 * 348.94261 * 29 10 8 48 48 H 1.08991 * 109.67914 * 109.49155 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1248 0.0000 4 6 3.6218 0.6930 0.0030 5 7 3.6285 -0.6624 -0.0039 6 1 4.4191 -1.2243 -0.0070 7 6 2.3264 -1.1089 -0.0059 8 6 1.8899 -2.5092 -0.0135 9 8 0.8332 -2.8200 0.5037 10 7 2.6594 -3.4516 -0.5932 11 6 2.1925 -4.8415 -0.7191 12 6 2.3598 -5.2823 -2.1776 13 1 1.6766 -4.7153 -2.8099 14 6 2.0484 -6.7754 -2.2992 15 8 3.7083 -5.0399 -2.5917 16 6 4.1016 -3.6777 -2.5369 17 6 5.5360 -3.5002 -3.0784 18 6 5.3189 -3.4107 -4.6051 19 7 3.9205 -3.0117 -4.8252 20 6 3.3227 -2.8398 -6.0452 21 1 2.3129 -2.4609 -6.1031 22 6 4.0144 -3.1526 -7.2074 23 7 5.2918 -3.4641 -7.1492 24 14 3.1321 -3.1316 -8.8538 25 1 3.3365 -1.8142 -9.5080 26 1 3.6784 -4.2055 -9.7218 27 1 1.6801 -3.3582 -8.6402 28 6 3.2683 -2.8262 -3.5146 29 6 3.9927 -3.1224 -1.1266 30 1 -0.3634 -0.0056 1.0276 31 1 -0.3633 -0.8873 -0.5186 32 1 -0.3634 0.8927 -0.5091 33 1 2.0136 2.1549 -0.0004 34 1 4.4972 1.3253 0.0061 35 1 2.7857 -5.4870 -0.0713 36 1 1.1414 -4.9015 -0.4368 37 1 1.0228 -6.9598 -1.9796 38 1 2.1672 -7.0880 -3.3366 39 1 2.7330 -7.3418 -1.6679 40 1 5.9813 -2.5812 -2.6973 41 1 6.1531 -4.3626 -2.8263 42 1 5.5037 -4.3823 -5.0633 43 1 5.9888 -2.6654 -5.0339 44 1 5.7753 -3.6823 -7.9613 45 1 2.2396 -3.1848 -3.5485 46 1 3.2941 -1.7768 -3.2210 47 1 4.1224 -2.0405 -1.1483 48 1 4.7609 -3.5722 -0.4979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071163925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:23 Heat of formation + Delta-G solvation = 21.741813 kcal Electronic energy + Delta-G solvation = -30894.537654 eV Core-core repulsion = 26952.171289 eV Total energy + Delta-G solvation = -3942.366365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.69543 -40.17102 -38.51679 -36.26588 -34.94934 -33.21527 -32.56781 -31.43667 -29.94441 -29.49555 -28.39869 -27.28841 -26.31540 -25.52149 -23.85305 -22.27299 -21.54165 -20.91353 -20.15057 -19.29057 -18.97537 -17.84920 -16.98124 -16.74910 -16.33177 -15.86390 -15.39984 -14.76180 -14.63345 -14.34773 -14.08026 -13.92796 -13.76433 -13.55256 -13.46538 -13.17505 -12.84015 -12.68097 -12.51875 -12.28426 -12.21033 -12.09318 -11.98237 -11.77947 -11.58952 -11.55530 -11.06509 -10.93981 -10.84433 -10.49948 -10.30324 -10.27165 -10.11999 -9.86047 -9.73666 -9.59925 -8.80383 -8.58500 -8.49854 -8.13966 -6.84643 -5.74611 -3.05674 1.47860 2.65336 2.73260 2.96967 3.33397 3.39092 3.45197 3.47195 3.82432 4.43666 4.46384 4.68640 4.80444 4.93928 4.98089 5.05068 5.10076 5.17111 5.27547 5.28347 5.44947 5.46407 5.50923 5.57537 5.68526 5.70427 5.72173 5.80282 5.83178 5.89417 6.04347 6.06585 6.08636 6.16660 6.28162 6.30655 6.34796 6.39396 6.49741 6.56862 6.69634 6.89789 7.22766 7.30740 7.47980 7.59930 7.63239 7.80084 8.05913 8.22956 9.19549 9.79635 10.45145 11.37880 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011524 B = 0.004366 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.148411 B = 6411.606359 C = 7304.410717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.079 4.079 3 C -0.208 4.208 4 C 0.021 3.979 5 N -0.543 5.543 6 H 0.419 0.581 7 C -0.053 4.053 8 C 0.594 3.406 9 O -0.530 6.530 10 N -0.610 5.610 11 C 0.087 3.913 12 C 0.070 3.930 13 H 0.069 0.931 14 C -0.139 4.139 15 O -0.345 6.345 16 C 0.094 3.906 17 C -0.130 4.130 18 C 0.181 3.819 19 N -0.596 5.596 20 C -0.229 4.229 21 H 0.076 0.924 22 C -0.004 4.004 23 N -0.919 5.919 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.289 1.289 27 H -0.281 1.281 28 C 0.122 3.878 29 C 0.072 3.928 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.142 0.858 34 H 0.171 0.829 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.043 0.957 44 H 0.252 0.748 45 H 0.041 0.959 46 H 0.021 0.979 47 H 0.098 0.902 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 2.676 16.696 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.232 4.232 4 C -0.114 4.114 5 N -0.145 5.145 6 H 0.263 0.737 7 C -0.165 4.165 8 C 0.384 3.616 9 O -0.407 6.407 10 N -0.344 5.344 11 C -0.035 4.035 12 C 0.012 3.988 13 H 0.087 0.913 14 C -0.197 4.197 15 O -0.264 6.264 16 C 0.052 3.948 17 C -0.169 4.169 18 C 0.057 3.943 19 N -0.322 5.322 20 C -0.357 4.357 21 H 0.094 0.906 22 C -0.200 4.200 23 N -0.566 5.566 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.005 4.005 29 C -0.052 4.052 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.160 0.840 34 H 0.188 0.812 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.038 0.962 47 H 0.115 0.885 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.984 2.175 16.685 16.943 hybrid contribution 0.050 0.077 -0.922 0.927 sum -1.934 2.252 15.763 16.040 Atomic orbital electron populations 1.20225 0.89461 1.02293 1.02056 1.19884 0.95722 0.90757 1.02362 1.20764 0.91790 0.98680 1.12014 1.22050 0.99633 0.83148 1.06560 1.42745 1.07230 1.07386 1.57159 0.73732 1.20075 0.83878 0.93289 1.19247 1.17103 0.83708 0.82986 0.77847 1.90799 1.23256 1.80971 1.45651 1.48094 1.17679 1.09653 1.58931 1.22398 1.02166 0.81087 0.97884 1.22486 0.85859 0.97583 0.92909 0.91285 1.21670 1.01318 0.93043 1.03645 1.87854 1.27769 1.23949 1.86823 1.22177 0.97811 0.83297 0.91522 1.22847 0.92588 1.00898 1.00539 1.21167 0.85906 1.00288 0.86949 1.44378 1.07545 1.80704 0.99620 1.19008 0.97602 1.37158 0.81921 0.90633 1.24780 0.96047 1.01482 0.97715 1.69957 1.06973 1.52787 1.26854 0.86158 0.78843 0.77280 0.83867 1.21666 1.21562 1.20647 1.21906 0.95775 0.95548 0.87252 1.22699 0.84130 1.02020 0.96400 0.91383 0.91454 0.91838 0.84007 0.81167 0.90776 0.88182 0.91126 0.90997 0.91901 0.91202 0.90704 0.92992 0.93863 0.93739 0.94094 0.96174 0.88471 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 9.73 36.01 0.35 -0.70 16 2 C -0.08 -1.08 6.20 -104.15 -0.65 -1.72 16 3 C -0.21 -2.38 10.76 -39.98 -0.43 -2.81 16 4 C 0.02 0.21 11.89 -16.91 -0.20 0.01 16 5 N -0.54 -6.04 4.81 -9.39 -0.05 -6.08 16 6 H 0.42 3.78 6.27 -40.82 -0.26 3.53 16 7 C -0.05 -0.75 6.45 -81.98 -0.53 -1.28 16 8 C 0.59 9.26 7.49 -12.86 -0.10 9.16 16 9 O -0.53 -9.37 15.26 5.20 0.08 -9.29 16 10 N -0.61 -8.76 2.96 -174.49 -0.52 -9.28 16 11 C 0.09 1.18 5.89 -3.53 -0.02 1.16 16 12 C 0.07 1.07 3.19 -26.58 -0.08 0.99 16 13 H 0.07 1.21 6.25 -51.93 -0.32 0.88 16 14 C -0.14 -1.75 9.57 37.16 0.36 -1.39 16 15 O -0.35 -6.23 9.93 -35.22 -0.35 -6.58 16 16 C 0.09 1.61 0.83 -89.86 -0.07 1.54 16 17 C -0.13 -2.29 6.12 -25.26 -0.15 -2.44 16 18 C 0.18 4.33 5.40 -2.96 -0.02 4.31 16 19 N -0.60 -15.20 3.40 -170.32 -0.58 -15.78 16 20 C -0.23 -6.43 10.26 -15.06 -0.15 -6.59 16 21 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 22 C 0.00 -0.11 5.47 -17.43 -0.10 -0.20 16 23 N -0.92 -26.82 10.36 55.49 0.58 -26.25 16 24 Si 0.91 22.22 29.56 -169.99 -5.03 17.20 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 C 0.12 2.56 6.18 -2.87 -0.02 2.54 16 29 C 0.07 0.96 4.45 -4.12 -0.02 0.94 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.95 7.36 -51.93 -0.38 0.57 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.36 7.12 -51.93 -0.37 0.99 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.05 1.40 7.32 -51.93 -0.38 1.02 16 43 H 0.04 1.12 7.59 -51.93 -0.39 0.73 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.04 0.90 6.09 -51.93 -0.32 0.59 16 46 H 0.02 0.43 7.80 -51.93 -0.40 0.03 16 47 H 0.10 1.21 3.55 -51.93 -0.18 1.02 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -33.78 372.22 -9.29 -43.07 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.20 Total: 3.86 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -1.83 Total: 3.52 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.57 Total: -57.38 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.27 Total: -15.87 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.78 -9.29 -43.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071163925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.807 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds