Wall clock time and date at job start Tue Mar 31 2020 18:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39841 * 126.45521 * 2 1 4 4 C 1.35452 * 107.86506 * 179.86650 * 3 2 1 5 5 N 1.35539 * 108.87148 * 0.39440 * 4 3 2 6 6 H 0.96996 * 125.68294 * 179.75294 * 5 4 3 7 7 C 1.37652 * 108.64401 * 359.75207 * 5 4 3 8 8 C 1.46675 * 126.23783 * 179.97438 * 7 5 4 9 9 O 1.21690 * 120.00408 * 150.53038 * 8 7 5 10 10 N 1.34775 * 119.99591 * 330.53535 * 8 7 5 11 11 C 1.47164 * 121.07087 * 185.40836 * 10 8 7 12 12 C 1.53281 * 108.56367 * 128.76361 * 11 10 8 13 13 H 1.09003 * 109.50995 * 292.99458 * 12 11 10 14 14 C 1.53002 * 109.51210 * 172.90268 * 12 11 10 15 15 O 1.43130 * 109.23489 * 52.97352 * 12 11 10 16 16 C 1.41894 * 114.36310 * 299.10887 * 15 12 11 17 17 C 1.54343 * 110.75978 * 183.36837 * 16 15 12 18 18 C 1.54466 * 102.87132 * 83.67614 * 17 16 15 19 19 N 1.47077 * 107.29661 * 21.48088 * 18 17 16 20 20 C 1.36941 * 125.62437 * 180.96759 * 19 18 17 21 21 H 1.08006 * 119.99224 * 185.36057 * 20 19 18 22 22 C 1.38812 * 120.00251 * 5.36277 * 20 19 18 23 23 N 1.31613 * 119.99962 * 352.05257 * 22 20 19 24 24 Si 1.86800 * 119.99830 * 172.05227 * 22 20 19 25 25 H 1.48498 * 109.47096 * 94.98202 * 24 22 20 26 26 H 1.48502 * 109.46835 * 214.98067 * 24 22 20 27 27 H 1.48499 * 109.47107 * 334.98197 * 24 22 20 28 28 C 1.47561 * 108.74603 * 1.00516 * 19 18 17 29 29 C 1.47330 * 121.07564 * 5.13170 * 10 8 7 30 30 H 1.08992 * 109.47411 * 269.69000 * 1 2 3 31 31 H 1.09006 * 109.46586 * 149.69319 * 1 2 3 32 32 H 1.09005 * 109.47193 * 29.69581 * 1 2 3 33 33 H 1.07996 * 126.06419 * 359.97274 * 3 2 1 34 34 H 1.07990 * 125.56895 * 180.15243 * 4 3 2 35 35 H 1.09000 * 109.62118 * 248.48216 * 11 10 8 36 36 H 1.09000 * 109.61953 * 9.03969 * 11 10 8 37 37 H 1.09000 * 109.46923 * 59.99640 * 14 12 11 38 38 H 1.08998 * 109.47319 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.46833 * 300.00343 * 14 12 11 40 40 H 1.08998 * 110.73370 * 202.02597 * 17 16 15 41 41 H 1.09007 * 110.73451 * 325.33187 * 17 16 15 42 42 H 1.08997 * 109.87777 * 262.05109 * 18 17 16 43 43 H 1.09000 * 110.00180 * 140.97382 * 18 17 16 44 44 H 0.96996 * 119.99914 * 180.02562 * 23 22 20 45 45 H 1.08997 * 110.37890 * 217.86285 * 28 19 18 46 46 H 1.09001 * 110.47757 * 95.55682 * 28 19 18 47 47 H 1.08991 * 109.67543 * 348.94261 * 29 10 8 48 48 H 1.08991 * 109.67914 * 109.49155 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1248 0.0000 4 6 3.6218 0.6930 0.0030 5 7 3.6285 -0.6624 -0.0039 6 1 4.4191 -1.2243 -0.0070 7 6 2.3264 -1.1089 -0.0059 8 6 1.8899 -2.5092 -0.0135 9 8 0.8332 -2.8200 0.5037 10 7 2.6594 -3.4516 -0.5932 11 6 2.1925 -4.8415 -0.7191 12 6 2.3598 -5.2823 -2.1776 13 1 1.6766 -4.7153 -2.8099 14 6 2.0484 -6.7754 -2.2992 15 8 3.7083 -5.0399 -2.5917 16 6 4.1016 -3.6777 -2.5369 17 6 5.5360 -3.5002 -3.0784 18 6 5.3189 -3.4107 -4.6051 19 7 3.9205 -3.0117 -4.8252 20 6 3.3227 -2.8398 -6.0452 21 1 2.3129 -2.4609 -6.1031 22 6 4.0144 -3.1526 -7.2074 23 7 5.2918 -3.4641 -7.1492 24 14 3.1321 -3.1316 -8.8538 25 1 3.3365 -1.8142 -9.5080 26 1 3.6784 -4.2055 -9.7218 27 1 1.6801 -3.3582 -8.6402 28 6 3.2683 -2.8262 -3.5146 29 6 3.9927 -3.1224 -1.1266 30 1 -0.3634 -0.0056 1.0276 31 1 -0.3633 -0.8873 -0.5186 32 1 -0.3634 0.8927 -0.5091 33 1 2.0136 2.1549 -0.0004 34 1 4.4972 1.3253 0.0061 35 1 2.7857 -5.4870 -0.0713 36 1 1.1414 -4.9015 -0.4368 37 1 1.0228 -6.9598 -1.9796 38 1 2.1672 -7.0880 -3.3366 39 1 2.7330 -7.3418 -1.6679 40 1 5.9813 -2.5812 -2.6973 41 1 6.1531 -4.3626 -2.8263 42 1 5.5037 -4.3823 -5.0633 43 1 5.9888 -2.6654 -5.0339 44 1 5.7753 -3.6823 -7.9613 45 1 2.2396 -3.1848 -3.5485 46 1 3.2941 -1.7768 -3.2210 47 1 4.1224 -2.0405 -1.1483 48 1 4.7609 -3.5722 -0.4979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071163925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:22 Heat of formation + Delta-G solvation = -0.419900 kcal Electronic energy + Delta-G solvation = -30895.498658 eV Core-core repulsion = 26952.171289 eV Total energy + Delta-G solvation = -3943.327369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.68649 -41.37941 -39.77641 -37.86636 -36.13895 -34.89622 -33.55519 -33.05969 -31.22886 -30.80546 -29.90668 -28.29738 -27.78190 -26.87877 -25.49978 -23.44374 -22.76156 -22.12695 -21.62064 -20.63705 -19.94901 -19.09433 -18.81778 -17.96250 -17.51364 -16.98566 -16.81259 -16.58649 -15.96678 -15.66561 -15.50828 -15.17910 -15.02054 -14.91553 -14.56878 -14.27305 -14.01807 -13.86455 -13.79199 -13.68030 -13.53993 -13.20876 -13.20047 -13.07382 -12.91099 -12.84798 -12.71856 -12.52445 -12.30676 -12.09109 -12.06779 -11.98650 -11.76359 -11.62411 -11.10032 -10.98626 -10.69450 -9.72302 -9.66673 -9.08610 -8.92239 -7.90643 -5.23465 0.47828 1.41555 1.43226 1.52488 1.60521 1.80070 2.06165 2.33498 2.44809 2.56700 3.26298 3.35207 3.40841 3.65548 3.68084 3.78063 3.91649 3.98841 4.05305 4.17023 4.24105 4.25853 4.37807 4.38593 4.45077 4.53314 4.59730 4.64801 4.73666 4.82753 4.86174 4.88318 4.92853 4.96655 5.01434 5.02460 5.10892 5.15291 5.27439 5.38301 5.39791 5.62743 5.74025 5.78053 5.96276 6.15538 6.16408 6.29272 6.51997 6.92280 7.06939 7.72452 8.36563 9.20061 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011524 B = 0.004366 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.148411 B = 6411.606359 C = 7304.410717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.098 4.098 3 C -0.226 4.226 4 C 0.042 3.958 5 N -0.536 5.536 6 H 0.430 0.570 7 C -0.086 4.086 8 C 0.590 3.410 9 O -0.562 6.562 10 N -0.612 5.612 11 C 0.093 3.907 12 C 0.068 3.932 13 H 0.036 0.964 14 C -0.133 4.133 15 O -0.365 6.365 16 C 0.102 3.898 17 C -0.115 4.115 18 C 0.188 3.812 19 N -0.617 5.617 20 C -0.248 4.248 21 H 0.070 0.930 22 C -0.055 4.055 23 N -0.943 5.943 24 Si 0.972 3.028 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.274 1.274 28 C 0.123 3.877 29 C 0.080 3.920 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.161 0.839 34 H 0.213 0.787 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.009 0.991 43 H 0.014 0.986 44 H 0.249 0.751 45 H 0.022 0.978 46 H 0.024 0.976 47 H 0.110 0.890 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 3.485 18.565 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C -0.250 4.250 4 C -0.094 4.094 5 N -0.139 5.139 6 H 0.275 0.725 7 C -0.198 4.198 8 C 0.382 3.618 9 O -0.441 6.441 10 N -0.344 5.344 11 C -0.029 4.029 12 C 0.010 3.990 13 H 0.054 0.946 14 C -0.191 4.191 15 O -0.284 6.284 16 C 0.061 3.939 17 C -0.153 4.153 18 C 0.063 3.937 19 N -0.343 5.343 20 C -0.377 4.377 21 H 0.088 0.912 22 C -0.249 4.249 23 N -0.591 5.591 24 Si 0.800 3.200 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.200 1.200 28 C -0.003 4.003 29 C -0.043 4.043 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.178 0.822 34 H 0.230 0.770 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.027 0.973 43 H 0.032 0.968 44 H 0.058 0.942 45 H 0.040 0.960 46 H 0.041 0.959 47 H 0.127 0.873 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.957 2.976 18.575 18.837 hybrid contribution -0.311 -0.112 -1.532 1.567 sum -1.268 2.864 17.044 17.329 Atomic orbital electron populations 1.20203 0.89642 1.01848 1.02163 1.20240 0.96213 0.91839 1.02446 1.21091 0.92187 0.99049 1.12626 1.22756 1.00564 0.82815 1.03228 1.42720 1.06512 1.08041 1.56617 0.72493 1.19950 0.85428 0.92564 1.21841 1.17366 0.83296 0.83722 0.77465 1.90769 1.24537 1.81568 1.47239 1.48154 1.17975 1.09753 1.58514 1.22376 1.02624 0.81245 0.96689 1.22593 0.83999 0.98890 0.93495 0.94566 1.21675 1.03270 0.91228 1.02904 1.87834 1.29022 1.24205 1.87355 1.22085 0.96308 0.82636 0.92887 1.22758 0.93366 1.03677 0.95515 1.20925 0.84649 0.96860 0.91286 1.44641 1.08689 1.80555 1.00432 1.19297 0.97622 1.37105 0.83637 0.91173 1.25555 0.96783 1.01635 1.00944 1.70159 1.08061 1.53583 1.27278 0.85178 0.77957 0.77218 0.79692 1.21001 1.21607 1.19953 1.22015 0.95343 0.96338 0.86623 1.22712 0.84608 1.02890 0.94087 0.90999 0.93862 0.90238 0.82151 0.77012 0.88315 0.88435 0.88788 0.92930 0.90096 0.87488 0.88793 0.97259 0.96820 0.94208 0.95998 0.95888 0.87284 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.06 9.73 71.24 0.69 -1.36 16 2 C -0.10 -2.59 6.20 -19.56 -0.12 -2.71 16 3 C -0.23 -4.59 10.76 22.01 0.24 -4.35 16 4 C 0.04 0.68 11.89 83.48 0.99 1.68 16 5 N -0.54 -10.20 4.81 -183.62 -0.88 -11.09 16 6 H 0.43 5.99 6.27 -92.71 -0.58 5.41 16 7 C -0.09 -2.31 6.45 40.35 0.26 -2.05 16 8 C 0.59 17.98 7.49 86.45 0.65 18.63 16 9 O -0.56 -20.04 15.26 -4.32 -0.07 -20.10 16 10 N -0.61 -16.56 2.96 -824.18 -2.44 -19.00 16 11 C 0.09 2.39 5.89 86.35 0.51 2.89 16 12 C 0.07 2.07 3.19 30.69 0.10 2.17 16 13 H 0.04 1.33 6.25 -2.39 -0.01 1.31 16 14 C -0.13 -3.23 9.57 71.98 0.69 -2.54 16 15 O -0.37 -12.87 9.93 -148.95 -1.48 -14.35 16 16 C 0.10 3.38 0.83 -10.30 -0.01 3.37 16 17 C -0.11 -3.81 6.12 31.55 0.19 -3.62 16 18 C 0.19 9.13 5.40 86.77 0.47 9.60 16 19 N -0.62 -32.30 3.40 -692.77 -2.36 -34.66 16 20 C -0.25 -14.37 10.26 84.03 0.86 -13.51 16 21 H 0.07 4.01 7.84 -2.91 -0.02 3.99 16 22 C -0.06 -3.21 5.47 84.86 0.46 -2.74 16 23 N -0.94 -56.80 10.36 21.65 0.22 -56.57 16 24 Si 0.97 46.63 29.56 68.60 2.03 48.66 16 25 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 28 C 0.12 5.20 6.18 86.56 0.53 5.73 16 29 C 0.08 1.91 4.45 85.88 0.38 2.29 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.04 1.27 7.36 -2.38 -0.02 1.26 16 32 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 34 H 0.21 1.55 8.06 -2.92 -0.02 1.53 16 35 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.10 2.58 7.12 -2.39 -0.02 2.57 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.11 2.77 8.00 -2.39 -0.02 2.75 16 41 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 42 H 0.01 0.51 7.32 -2.39 -0.02 0.50 16 43 H 0.01 0.73 7.59 -2.39 -0.02 0.71 16 44 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 45 H 0.02 1.01 6.09 -2.39 -0.01 0.99 16 46 H 0.02 0.98 7.80 -2.39 -0.02 0.96 16 47 H 0.11 2.34 3.55 -2.39 -0.01 2.33 16 48 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -78.07 372.22 2.33 -75.74 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.40 Total: 17.89 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 6.90 Total: 13.48 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -5.45 Total: -121.32 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.54 Total: -34.45 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -78.07 2.33 -75.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071163925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.317 kcal (2) G-P(sol) polarization free energy of solvation -78.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds