Wall clock time and date at job start Tue Mar 31 2020 18:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39841 * 126.46188 * 2 1 4 4 C 1.35448 * 107.86449 * 180.29958 * 3 2 1 5 5 N 1.35532 * 108.87422 * 359.74277 * 4 3 2 6 6 H 0.97002 * 125.67784 * 179.97438 * 5 4 3 7 7 C 1.37651 * 108.64195 * 359.97438 * 5 4 3 8 8 C 1.46679 * 126.23017 * 179.97438 * 7 5 4 9 9 O 1.21702 * 120.00097 * 209.54944 * 8 7 5 10 10 N 1.34776 * 120.00374 * 29.55190 * 8 7 5 11 11 C 1.47162 * 121.07519 * 174.59085 * 10 8 7 12 12 C 1.53272 * 108.56162 * 231.24683 * 11 10 8 13 13 H 1.09007 * 109.51054 * 66.93431 * 12 11 10 14 14 C 1.52999 * 109.51527 * 187.03531 * 12 11 10 15 15 O 1.43131 * 109.22899 * 307.01397 * 12 11 10 16 16 C 1.41889 * 114.36133 * 60.90139 * 15 12 11 17 17 C 1.54374 * 110.72324 * 63.27215 * 16 15 12 18 18 C 1.54457 * 102.87006 * 83.69215 * 17 16 15 19 19 N 1.47092 * 107.29672 * 21.50046 * 18 17 16 20 20 C 1.36930 * 125.62791 * 180.97517 * 19 18 17 21 21 H 1.07998 * 119.99695 * 185.30851 * 20 19 18 22 22 C 1.38811 * 120.00279 * 5.31129 * 20 19 18 23 23 N 1.31620 * 119.99986 * 351.97890 * 22 20 19 24 24 Si 1.86800 * 120.00201 * 171.97494 * 22 20 19 25 25 H 1.48490 * 109.47301 * 275.01420 * 24 22 20 26 26 H 1.48508 * 109.47014 * 35.01753 * 24 22 20 27 27 H 1.48502 * 109.47072 * 155.01071 * 24 22 20 28 28 C 1.47574 * 108.74103 * 1.24284 * 19 18 17 29 29 C 1.47336 * 121.07291 * 354.61168 * 10 8 7 30 30 H 1.09002 * 109.47226 * 270.14210 * 1 2 3 31 31 H 1.08999 * 109.46923 * 30.13476 * 1 2 3 32 32 H 1.08996 * 109.47342 * 150.13542 * 1 2 3 33 33 H 1.08002 * 126.06435 * 0.02763 * 3 2 1 34 34 H 1.08004 * 125.56477 * 179.70612 * 4 3 2 35 35 H 1.08998 * 109.62785 * 350.97309 * 11 10 8 36 36 H 1.09008 * 109.62164 * 111.33965 * 11 10 8 37 37 H 1.09008 * 109.46512 * 60.00170 * 14 12 11 38 38 H 1.08998 * 109.47344 * 179.97438 * 14 12 11 39 39 H 1.08999 * 109.46870 * 300.00340 * 14 12 11 40 40 H 1.09008 * 110.73139 * 325.34568 * 17 16 15 41 41 H 1.09002 * 110.73667 * 202.04523 * 17 16 15 42 42 H 1.08997 * 109.87945 * 262.07920 * 18 17 16 43 43 H 1.08994 * 109.87966 * 140.92828 * 18 17 16 44 44 H 0.97000 * 120.00244 * 180.02562 * 23 22 20 45 45 H 1.09005 * 110.37392 * 95.25970 * 28 19 18 46 46 H 1.08995 * 110.37592 * 217.60807 * 28 19 18 47 47 H 1.09005 * 109.67579 * 11.05552 * 29 10 8 48 48 H 1.09000 * 109.67920 * 250.51402 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6927 -0.0067 5 7 3.6283 -0.6626 -0.0052 6 1 4.4190 -1.2245 -0.0094 7 6 2.3262 -1.1089 0.0032 8 6 1.8898 -2.5092 0.0070 9 8 0.8301 -2.8178 -0.5060 10 7 2.6621 -3.4544 0.5785 11 6 2.1957 -4.8448 0.7007 12 6 2.3704 -5.2918 2.1564 13 1 1.6912 -4.7266 2.7948 14 6 2.0581 -6.7850 2.2735 15 8 3.7211 -5.0515 2.5645 16 6 4.1142 -3.6891 2.5137 17 6 3.2783 -2.8423 3.4972 18 6 4.0193 -3.0405 4.8378 19 7 5.3928 -3.4607 4.5203 20 6 6.3677 -3.7573 5.4349 21 1 7.3721 -3.9742 5.1023 22 6 6.0652 -3.7792 6.7895 23 7 4.8886 -3.3633 7.2079 24 14 7.3279 -4.3991 8.0186 25 1 7.2362 -5.8778 8.1193 26 1 8.6894 -4.0172 7.5649 27 1 7.0619 -3.7950 9.3489 28 6 5.5484 -3.5035 3.0534 29 6 4.0005 -3.1288 1.1015 30 1 -0.3634 0.0025 1.0277 31 1 -0.3633 0.8888 -0.5159 32 1 -0.3634 -0.8911 -0.5117 33 1 2.0137 2.1549 0.0004 34 1 4.4973 1.3251 -0.0130 35 1 1.1433 -4.9036 0.4235 36 1 2.7834 -5.4870 0.0447 37 1 2.7388 -7.3495 1.6362 38 1 2.1829 -7.1022 3.3088 39 1 1.0305 -6.9670 1.9586 40 1 2.2578 -3.2201 3.5608 41 1 3.2845 -1.7924 3.2043 42 1 3.5223 -3.8123 5.4255 43 1 4.0376 -2.1030 5.3934 44 1 4.6773 -3.3782 8.1544 45 1 5.9757 -2.5691 2.6897 46 1 6.1747 -4.3469 2.7627 47 1 4.1326 -2.0470 1.1240 48 1 4.7627 -3.5789 0.4654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071163926.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:26 Heat of formation + Delta-G solvation = 22.155998 kcal Electronic energy + Delta-G solvation = -30731.878242 eV Core-core repulsion = 26789.529837 eV Total energy + Delta-G solvation = -3942.348405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.72555 -40.18747 -38.54324 -36.30232 -34.98285 -33.15444 -32.58553 -31.46822 -29.95820 -29.40531 -28.63199 -27.32265 -26.29580 -25.49535 -23.81582 -22.29814 -21.55789 -20.93377 -20.19607 -19.30333 -19.02104 -17.87311 -17.08511 -16.76215 -16.26534 -15.88675 -15.43675 -14.77498 -14.59319 -14.40386 -14.12059 -13.95377 -13.76994 -13.59724 -13.43432 -13.14443 -12.86337 -12.76575 -12.56591 -12.32319 -12.25937 -12.07408 -12.03667 -11.83423 -11.64194 -11.63228 -11.05128 -10.95489 -10.89546 -10.42943 -10.29655 -10.16976 -10.12162 -9.93749 -9.74618 -9.58081 -8.83781 -8.59327 -8.53238 -8.17507 -6.87389 -5.74795 -3.07011 1.43914 2.61535 2.70481 2.93814 3.30532 3.39436 3.44505 3.45977 3.79556 4.39966 4.45610 4.67580 4.78547 4.91585 4.95482 5.02619 5.06876 5.12309 5.23887 5.26507 5.41594 5.46428 5.50270 5.55888 5.64929 5.67510 5.72681 5.80072 5.80541 5.85891 6.01227 6.03231 6.05478 6.14438 6.28285 6.30780 6.36675 6.40053 6.41799 6.53861 6.66589 6.86790 7.20243 7.27742 7.49974 7.58845 7.61292 7.79723 8.02471 8.21523 9.17976 9.78433 10.43665 11.37490 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013876 B = 0.003932 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.324965 B = 7119.980241 C = 8282.392650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.079 4.079 3 C -0.209 4.209 4 C 0.022 3.978 5 N -0.543 5.543 6 H 0.420 0.580 7 C -0.054 4.054 8 C 0.595 3.405 9 O -0.532 6.532 10 N -0.609 5.609 11 C 0.087 3.913 12 C 0.069 3.931 13 H 0.066 0.934 14 C -0.140 4.140 15 O -0.342 6.342 16 C 0.095 3.905 17 C -0.165 4.165 18 C 0.185 3.815 19 N -0.597 5.597 20 C -0.231 4.231 21 H 0.078 0.922 22 C -0.004 4.004 23 N -0.918 5.918 24 Si 0.910 3.090 25 H -0.288 1.288 26 H -0.282 1.282 27 H -0.291 1.291 28 C 0.153 3.847 29 C 0.071 3.929 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.171 0.829 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.042 0.958 44 H 0.253 0.747 45 H 0.032 0.968 46 H 0.052 0.948 47 H 0.098 0.902 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.231 3.773 -16.007 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.234 4.234 4 C -0.113 4.113 5 N -0.145 5.145 6 H 0.264 0.736 7 C -0.167 4.167 8 C 0.385 3.615 9 O -0.409 6.409 10 N -0.342 5.342 11 C -0.036 4.036 12 C 0.010 3.990 13 H 0.084 0.916 14 C -0.198 4.198 15 O -0.261 6.261 16 C 0.053 3.947 17 C -0.203 4.203 18 C 0.061 3.939 19 N -0.323 5.323 20 C -0.359 4.359 21 H 0.096 0.904 22 C -0.201 4.201 23 N -0.565 5.565 24 Si 0.740 3.260 25 H -0.215 1.215 26 H -0.207 1.207 27 H -0.217 1.217 28 C 0.026 3.974 29 C -0.053 4.053 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.160 0.840 34 H 0.189 0.811 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.115 0.885 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.534 3.297 -15.982 17.232 hybrid contribution 1.020 -0.228 0.728 1.274 sum -4.514 3.069 -15.254 16.201 Atomic orbital electron populations 1.20357 0.89549 1.03104 1.02107 1.19881 0.95715 0.90722 1.02393 1.20776 0.91796 0.98697 1.12081 1.22070 0.99656 0.83172 1.06448 1.42778 1.07270 1.07412 1.57019 0.73615 1.20051 0.83883 0.93297 1.19422 1.17114 0.83726 0.82973 0.77721 1.90780 1.23260 1.81053 1.45814 1.48100 1.17312 1.09531 1.59276 1.22389 1.02171 0.81106 0.97903 1.22487 0.85929 0.97525 0.93028 0.91592 1.21678 1.01327 0.93056 1.03695 1.87921 1.27251 1.24021 1.86863 1.22364 0.98436 0.82679 0.91176 1.23356 0.99286 0.98530 0.99143 1.21109 0.83764 0.99333 0.89744 1.44388 1.09678 1.79757 0.98516 1.19002 0.89806 1.40678 0.86377 0.90370 1.24806 0.97090 1.01278 0.96877 1.69972 1.21219 1.51262 1.14077 0.86172 0.80322 0.78755 0.80714 1.21490 1.20738 1.21739 1.21373 0.90702 0.98359 0.86998 1.22768 0.83915 1.01960 0.96694 0.91699 0.91775 0.90204 0.84017 0.81131 0.88226 0.90701 0.91771 0.91023 0.91126 0.91796 0.91972 0.93325 0.94013 0.93693 0.95072 0.92945 0.88494 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 10.13 36.00 0.36 -0.76 16 2 C -0.08 -1.03 6.20 -104.16 -0.65 -1.68 16 3 C -0.21 -2.30 10.76 -39.98 -0.43 -2.73 16 4 C 0.02 0.21 11.89 -16.91 -0.20 0.01 16 5 N -0.54 -5.88 4.81 -9.39 -0.05 -5.93 16 6 H 0.42 3.77 6.26 -40.82 -0.26 3.52 16 7 C -0.05 -0.74 6.45 -81.98 -0.53 -1.27 16 8 C 0.60 8.95 7.56 -12.85 -0.10 8.85 16 9 O -0.53 -9.11 14.71 5.19 0.08 -9.03 16 10 N -0.61 -8.47 2.95 -174.24 -0.51 -8.98 16 11 C 0.09 1.14 5.89 -3.54 -0.02 1.12 16 12 C 0.07 1.00 3.19 -26.59 -0.08 0.92 16 13 H 0.07 1.04 6.22 -51.92 -0.32 0.72 16 14 C -0.14 -1.69 9.57 37.16 0.36 -1.34 16 15 O -0.34 -6.15 9.94 -35.22 -0.35 -6.50 16 16 C 0.10 1.63 0.84 -89.52 -0.08 1.55 16 17 C -0.16 -3.13 5.86 -25.25 -0.15 -3.28 16 18 C 0.19 4.51 5.39 -2.95 -0.02 4.49 16 19 N -0.60 -14.97 3.40 -170.17 -0.58 -15.55 16 20 C -0.23 -6.35 10.26 -15.06 -0.15 -6.50 16 21 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 22 C 0.00 -0.11 5.47 -17.43 -0.10 -0.20 16 23 N -0.92 -26.92 10.37 55.49 0.58 -26.35 16 24 Si 0.91 21.96 29.56 -169.99 -5.03 16.93 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 C 0.15 3.00 6.43 -2.74 -0.02 2.98 16 29 C 0.07 0.94 4.50 -3.91 -0.02 0.92 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.07 6.43 -51.93 -0.33 0.74 16 33 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.17 1.08 8.06 -52.48 -0.42 0.65 16 35 H 0.10 1.30 7.12 -51.93 -0.37 0.93 16 36 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 1.20 6.07 -51.92 -0.32 0.88 16 41 H 0.06 1.12 7.83 -51.93 -0.41 0.72 16 42 H 0.05 1.34 7.32 -51.93 -0.38 0.96 16 43 H 0.04 1.12 7.59 -51.93 -0.39 0.73 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.10 1.18 3.56 -51.93 -0.18 1.00 16 48 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -33.36 371.27 -9.23 -42.59 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.15 Total: 4.11 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -1.81 Total: 3.10 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.56 Total: -56.80 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.27 Total: -15.53 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.36 -9.23 -42.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071163926.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.749 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds