Wall clock time and date at job start Tue Mar 31 2020 18:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39841 * 126.46188 * 2 1 4 4 C 1.35448 * 107.86449 * 180.29958 * 3 2 1 5 5 N 1.35532 * 108.87422 * 359.74277 * 4 3 2 6 6 H 0.97002 * 125.67784 * 179.97438 * 5 4 3 7 7 C 1.37651 * 108.64195 * 359.97438 * 5 4 3 8 8 C 1.46679 * 126.23017 * 179.97438 * 7 5 4 9 9 O 1.21702 * 120.00097 * 209.54944 * 8 7 5 10 10 N 1.34776 * 120.00374 * 29.55190 * 8 7 5 11 11 C 1.47162 * 121.07519 * 174.59085 * 10 8 7 12 12 C 1.53272 * 108.56162 * 231.24683 * 11 10 8 13 13 H 1.09007 * 109.51054 * 66.93431 * 12 11 10 14 14 C 1.52999 * 109.51527 * 187.03531 * 12 11 10 15 15 O 1.43131 * 109.22899 * 307.01397 * 12 11 10 16 16 C 1.41889 * 114.36133 * 60.90139 * 15 12 11 17 17 C 1.54374 * 110.72324 * 63.27215 * 16 15 12 18 18 C 1.54457 * 102.87006 * 83.69215 * 17 16 15 19 19 N 1.47092 * 107.29672 * 21.50046 * 18 17 16 20 20 C 1.36930 * 125.62791 * 180.97517 * 19 18 17 21 21 H 1.07998 * 119.99695 * 185.30851 * 20 19 18 22 22 C 1.38811 * 120.00279 * 5.31129 * 20 19 18 23 23 N 1.31620 * 119.99986 * 351.97890 * 22 20 19 24 24 Si 1.86800 * 120.00201 * 171.97494 * 22 20 19 25 25 H 1.48490 * 109.47301 * 275.01420 * 24 22 20 26 26 H 1.48508 * 109.47014 * 35.01753 * 24 22 20 27 27 H 1.48502 * 109.47072 * 155.01071 * 24 22 20 28 28 C 1.47574 * 108.74103 * 1.24284 * 19 18 17 29 29 C 1.47336 * 121.07291 * 354.61168 * 10 8 7 30 30 H 1.09002 * 109.47226 * 270.14210 * 1 2 3 31 31 H 1.08999 * 109.46923 * 30.13476 * 1 2 3 32 32 H 1.08996 * 109.47342 * 150.13542 * 1 2 3 33 33 H 1.08002 * 126.06435 * 0.02763 * 3 2 1 34 34 H 1.08004 * 125.56477 * 179.70612 * 4 3 2 35 35 H 1.08998 * 109.62785 * 350.97309 * 11 10 8 36 36 H 1.09008 * 109.62164 * 111.33965 * 11 10 8 37 37 H 1.09008 * 109.46512 * 60.00170 * 14 12 11 38 38 H 1.08998 * 109.47344 * 179.97438 * 14 12 11 39 39 H 1.08999 * 109.46870 * 300.00340 * 14 12 11 40 40 H 1.09008 * 110.73139 * 325.34568 * 17 16 15 41 41 H 1.09002 * 110.73667 * 202.04523 * 17 16 15 42 42 H 1.08997 * 109.87945 * 262.07920 * 18 17 16 43 43 H 1.08994 * 109.87966 * 140.92828 * 18 17 16 44 44 H 0.97000 * 120.00244 * 180.02562 * 23 22 20 45 45 H 1.09005 * 110.37392 * 95.25970 * 28 19 18 46 46 H 1.08995 * 110.37592 * 217.60807 * 28 19 18 47 47 H 1.09005 * 109.67579 * 11.05552 * 29 10 8 48 48 H 1.09000 * 109.67920 * 250.51402 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6927 -0.0067 5 7 3.6283 -0.6626 -0.0052 6 1 4.4190 -1.2245 -0.0094 7 6 2.3262 -1.1089 0.0032 8 6 1.8898 -2.5092 0.0070 9 8 0.8301 -2.8178 -0.5060 10 7 2.6621 -3.4544 0.5785 11 6 2.1957 -4.8448 0.7007 12 6 2.3704 -5.2918 2.1564 13 1 1.6912 -4.7266 2.7948 14 6 2.0581 -6.7850 2.2735 15 8 3.7211 -5.0515 2.5645 16 6 4.1142 -3.6891 2.5137 17 6 3.2783 -2.8423 3.4972 18 6 4.0193 -3.0405 4.8378 19 7 5.3928 -3.4607 4.5203 20 6 6.3677 -3.7573 5.4349 21 1 7.3721 -3.9742 5.1023 22 6 6.0652 -3.7792 6.7895 23 7 4.8886 -3.3633 7.2079 24 14 7.3279 -4.3991 8.0186 25 1 7.2362 -5.8778 8.1193 26 1 8.6894 -4.0172 7.5649 27 1 7.0619 -3.7950 9.3489 28 6 5.5484 -3.5035 3.0534 29 6 4.0005 -3.1288 1.1015 30 1 -0.3634 0.0025 1.0277 31 1 -0.3633 0.8888 -0.5159 32 1 -0.3634 -0.8911 -0.5117 33 1 2.0137 2.1549 0.0004 34 1 4.4973 1.3251 -0.0130 35 1 1.1433 -4.9036 0.4235 36 1 2.7834 -5.4870 0.0447 37 1 2.7388 -7.3495 1.6362 38 1 2.1829 -7.1022 3.3088 39 1 1.0305 -6.9670 1.9586 40 1 2.2578 -3.2201 3.5608 41 1 3.2845 -1.7924 3.2043 42 1 3.5223 -3.8123 5.4255 43 1 4.0376 -2.1030 5.3934 44 1 4.6773 -3.3782 8.1544 45 1 5.9757 -2.5691 2.6897 46 1 6.1747 -4.3469 2.7627 47 1 4.1326 -2.0470 1.1240 48 1 4.7627 -3.5789 0.4654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071163926.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:25 Heat of formation + Delta-G solvation = 0.635517 kcal Electronic energy + Delta-G solvation = -30732.811440 eV Core-core repulsion = 26789.529837 eV Total energy + Delta-G solvation = -3943.281603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.68289 -41.37153 -39.77290 -37.89167 -36.14357 -34.79406 -33.53417 -33.03821 -31.15111 -30.83697 -30.10750 -28.28347 -27.64485 -26.84400 -25.48816 -23.42867 -22.68780 -22.19507 -21.64609 -20.63816 -19.96140 -19.03086 -18.88833 -17.92796 -17.44707 -16.98357 -16.79201 -16.58365 -15.92165 -15.72301 -15.42520 -15.19344 -15.05761 -14.82016 -14.57316 -14.24012 -14.05793 -13.90850 -13.82642 -13.68793 -13.51709 -13.19458 -13.18655 -13.05527 -12.89501 -12.83680 -12.78659 -12.53561 -12.31283 -12.08799 -12.03561 -11.87955 -11.78389 -11.54624 -11.06696 -10.97104 -10.68915 -9.70928 -9.67521 -9.08384 -8.91348 -7.86599 -5.20295 0.47604 1.45643 1.49043 1.56074 1.60912 1.79560 2.06005 2.34104 2.48642 2.55470 3.29251 3.38110 3.40389 3.59884 3.68564 3.79328 3.92107 3.99040 4.06033 4.18064 4.25380 4.27075 4.33810 4.38919 4.40897 4.50010 4.64951 4.68713 4.76073 4.81132 4.86117 4.87659 4.90034 4.98267 5.00850 5.02270 5.11572 5.18647 5.28444 5.42225 5.43539 5.56721 5.69505 5.78745 5.97143 6.15522 6.18142 6.31481 6.50970 6.92884 7.07773 7.75359 8.39919 9.24941 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013876 B = 0.003932 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.324965 B = 7119.980241 C = 8282.392650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.096 4.096 3 C -0.225 4.225 4 C 0.041 3.959 5 N -0.537 5.537 6 H 0.429 0.571 7 C -0.086 4.086 8 C 0.593 3.407 9 O -0.562 6.562 10 N -0.609 5.609 11 C 0.092 3.908 12 C 0.067 3.933 13 H 0.046 0.954 14 C -0.135 4.135 15 O -0.367 6.367 16 C 0.105 3.895 17 C -0.148 4.148 18 C 0.198 3.802 19 N -0.619 5.619 20 C -0.240 4.240 21 H 0.088 0.912 22 C -0.065 4.065 23 N -0.952 5.952 24 Si 0.976 3.024 25 H -0.288 1.288 26 H -0.264 1.264 27 H -0.297 1.297 28 C 0.147 3.853 29 C 0.081 3.919 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.161 0.839 34 H 0.211 0.789 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.003 0.997 43 H 0.006 0.994 44 H 0.245 0.755 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.111 0.889 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 4.438 -18.187 19.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.249 4.249 4 C -0.095 4.095 5 N -0.140 5.140 6 H 0.274 0.726 7 C -0.198 4.198 8 C 0.384 3.616 9 O -0.441 6.441 10 N -0.342 5.342 11 C -0.031 4.031 12 C 0.009 3.991 13 H 0.064 0.936 14 C -0.192 4.192 15 O -0.287 6.287 16 C 0.063 3.937 17 C -0.187 4.187 18 C 0.073 3.927 19 N -0.345 5.345 20 C -0.369 4.369 21 H 0.106 0.894 22 C -0.258 4.258 23 N -0.601 5.601 24 Si 0.804 3.196 25 H -0.215 1.215 26 H -0.189 1.189 27 H -0.224 1.224 28 C 0.021 3.979 29 C -0.043 4.043 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.178 0.822 34 H 0.228 0.772 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.129 0.871 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.885 3.948 -18.204 19.028 hybrid contribution 0.508 -0.393 1.387 1.529 sum -3.377 3.555 -16.817 17.517 Atomic orbital electron populations 1.20335 0.89588 1.03100 1.01934 1.20231 0.96248 0.91674 1.02316 1.21098 0.92121 0.99112 1.12546 1.22747 1.00596 0.82829 1.03342 1.42757 1.06597 1.08050 1.56611 0.72572 1.19931 0.85306 0.92604 1.21966 1.17351 0.83304 0.83650 0.77293 1.90758 1.24467 1.81616 1.47260 1.48133 1.17442 1.09656 1.58919 1.22375 1.02672 0.81158 0.96848 1.22639 0.83950 0.98877 0.93651 0.93598 1.21690 1.03261 0.91360 1.02924 1.87887 1.28996 1.24302 1.87466 1.22215 0.96111 0.82424 0.92910 1.23145 0.98781 0.99859 0.96889 1.20730 0.84309 0.95886 0.91782 1.44649 1.09259 1.79723 1.00878 1.19455 0.90824 1.39413 0.87170 0.89399 1.25650 0.99070 1.02146 0.98888 1.70203 1.23257 1.52917 1.13709 0.85136 0.78795 0.77713 0.77968 1.21549 1.18901 1.22364 1.21644 0.92509 0.99725 0.83975 1.22724 0.84412 1.02836 0.94293 0.91946 0.89798 0.92138 0.82157 0.77230 0.88153 0.88798 0.90584 0.92814 0.88522 0.91996 0.90638 0.97886 0.97614 0.94541 0.92051 0.92678 0.87129 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.17 10.13 71.23 0.72 -1.45 16 2 C -0.10 -2.37 6.20 -19.56 -0.12 -2.49 16 3 C -0.23 -4.32 10.76 22.01 0.24 -4.09 16 4 C 0.04 0.63 11.89 83.48 0.99 1.63 16 5 N -0.54 -9.90 4.81 -183.62 -0.88 -10.79 16 6 H 0.43 6.03 6.26 -92.71 -0.58 5.45 16 7 C -0.09 -2.20 6.45 40.35 0.26 -1.94 16 8 C 0.59 17.16 7.56 86.45 0.65 17.81 16 9 O -0.56 -19.10 14.71 -4.35 -0.06 -19.17 16 10 N -0.61 -15.80 2.95 -823.37 -2.43 -18.22 16 11 C 0.09 2.26 5.89 86.34 0.51 2.77 16 12 C 0.07 1.91 3.19 30.69 0.10 2.01 16 13 H 0.05 1.49 6.22 -2.38 -0.01 1.47 16 14 C -0.13 -3.13 9.57 71.98 0.69 -2.44 16 15 O -0.37 -12.94 9.94 -148.95 -1.48 -14.42 16 16 C 0.11 3.45 0.84 -10.08 -0.01 3.44 16 17 C -0.15 -5.65 5.86 31.56 0.19 -5.47 16 18 C 0.20 10.04 5.39 86.76 0.47 10.50 16 19 N -0.62 -31.27 3.40 -692.28 -2.35 -33.62 16 20 C -0.24 -13.27 10.26 84.03 0.86 -12.41 16 21 H 0.09 4.57 7.84 -2.91 -0.02 4.54 16 22 C -0.06 -3.69 5.47 84.86 0.46 -3.22 16 23 N -0.95 -58.15 10.37 21.65 0.22 -57.93 16 24 Si 0.98 45.73 29.56 68.60 2.03 47.76 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 27 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 28 C 0.15 5.52 6.43 86.63 0.56 6.08 16 29 C 0.08 1.92 4.50 86.01 0.39 2.30 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.65 6.43 -2.39 -0.02 1.63 16 33 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 34 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.10 2.50 7.12 -2.39 -0.02 2.48 16 36 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 2.38 6.07 -2.38 -0.01 2.37 16 41 H 0.08 2.67 7.83 -2.39 -0.02 2.65 16 42 H 0.00 0.17 7.32 -2.39 -0.02 0.15 16 43 H 0.01 0.32 7.59 -2.39 -0.02 0.30 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 45 H 0.06 1.98 8.00 -2.38 -0.02 1.96 16 46 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.11 2.33 3.56 -2.38 -0.01 2.32 16 48 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -76.01 371.27 2.40 -73.61 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.40 Total: 19.75 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 6.95 Total: 13.03 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -5.44 Total: -120.56 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.54 Total: -33.59 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -76.01 2.40 -73.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071163926.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.248 kcal (2) G-P(sol) polarization free energy of solvation -76.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds