Wall clock time and date at job start Tue Mar 31 2020 17:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35923 * 117.00437 * 2 1 4 4 C 1.38851 * 120.40300 * 0.02562 * 3 2 1 5 5 N 1.31880 * 120.99944 * 180.02562 * 4 3 2 6 6 C 1.31681 * 121.94292 * 359.97438 * 5 4 3 7 7 C 1.39530 * 120.68793 * 0.02562 * 6 5 4 8 8 C 1.47851 * 120.52859 * 179.97438 * 7 6 5 9 9 O 1.21555 * 120.00299 * 174.09489 * 8 7 6 10 10 N 1.34779 * 120.00168 * 354.09159 * 8 7 6 11 11 C 1.46501 * 120.00002 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.52483 * 325.08516 * 11 10 8 13 13 C 1.53044 * 109.49555 * 205.00465 * 11 10 8 14 14 C 1.53037 * 109.53835 * 301.41296 * 13 11 10 15 15 C 1.53192 * 109.31539 * 298.63829 * 14 13 11 16 16 H 1.09005 * 109.58559 * 294.84520 * 15 14 13 17 17 C 1.52997 * 109.58831 * 174.56415 * 15 14 13 18 18 N 1.46921 * 108.77375 * 54.63356 * 15 14 13 19 19 C 1.36943 * 120.63124 * 126.37263 * 18 15 14 20 20 H 1.07998 * 119.99788 * 322.33530 * 19 18 15 21 21 C 1.38809 * 119.99918 * 142.33168 * 19 18 15 22 22 N 1.31617 * 120.00458 * 342.86708 * 21 19 18 23 23 Si 1.86810 * 119.99704 * 162.86120 * 21 19 18 24 24 H 1.48503 * 109.46720 * 60.00327 * 23 21 19 25 25 H 1.48493 * 109.47158 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47156 * 300.00441 * 23 21 19 27 27 C 1.46920 * 118.74327 * 306.39259 * 18 15 14 28 28 C 1.38839 * 120.40648 * 180.26228 * 3 2 1 29 29 C 1.50706 * 120.88231 * 0.02562 * 28 3 2 30 30 H 1.09000 * 109.47351 * 59.99660 * 1 2 3 31 31 H 1.08997 * 109.47482 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47051 * 299.99918 * 1 2 3 33 33 H 1.07998 * 119.49920 * 0.02713 * 4 3 2 34 34 H 1.08001 * 119.65723 * 179.97438 * 6 5 4 35 35 H 0.97004 * 119.99682 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.45604 * 181.39646 * 13 11 10 37 37 H 1.08996 * 109.46037 * 61.43493 * 13 11 10 38 38 H 1.08995 * 109.49786 * 178.68538 * 14 13 11 39 39 H 1.08999 * 109.49905 * 58.58941 * 14 13 11 40 40 H 1.09005 * 109.47340 * 60.28051 * 17 15 14 41 41 H 1.09000 * 109.47312 * 180.28555 * 17 15 14 42 42 H 1.09001 * 109.47198 * 300.28797 * 17 15 14 43 43 H 0.97001 * 120.00128 * 180.02562 * 22 21 19 44 44 H 1.09007 * 109.58819 * 293.82581 * 27 18 15 45 45 H 1.09000 * 109.70900 * 173.46940 * 27 18 15 46 46 H 1.09007 * 109.46937 * 264.15997 * 29 28 3 47 47 H 1.08990 * 109.46740 * 24.15706 * 29 28 3 48 48 H 1.08994 * 109.46892 * 144.16521 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8847 3.5621 0.0000 6 6 3.1954 3.6891 -0.0005 7 6 4.0199 2.5635 -0.0011 8 6 5.4911 2.7102 -0.0022 9 8 6.1999 1.7286 0.1056 10 7 6.0465 3.9323 -0.1229 11 6 7.5042 4.0777 -0.1234 12 1 7.9441 3.3404 0.5482 13 6 7.8774 5.4850 0.3481 14 6 7.2331 6.5217 -0.5752 15 6 7.7650 6.3320 -1.9992 16 1 8.8324 6.5515 -2.0229 17 6 7.0264 7.2739 -2.9523 18 7 7.5395 4.9385 -2.4064 19 6 6.8760 4.6499 -3.5691 20 1 6.0379 5.2573 -3.8775 21 6 7.2807 3.5769 -4.3512 22 7 8.4737 3.0489 -4.1776 23 14 6.1318 2.8822 -5.6502 24 1 5.8024 3.9417 -6.6373 25 1 6.7954 1.7487 -6.3428 26 1 4.8840 2.4038 -5.0026 27 6 8.0391 3.8603 -1.5424 28 6 3.4321 1.2934 -0.0055 29 6 4.2810 0.0482 -0.0121 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2198 2.3226 0.0014 34 1 3.6368 4.6748 -0.0013 35 1 5.4808 4.7157 -0.2086 36 1 8.9610 5.6007 0.3238 37 1 7.5192 5.6336 1.3667 38 1 7.4801 7.5240 -0.2251 39 1 6.1511 6.3906 -0.5705 40 1 7.1910 8.3061 -2.6430 41 1 7.4027 7.1337 -3.9656 42 1 5.9594 7.0529 -2.9271 43 1 8.7566 2.2993 -4.7245 44 1 9.1289 3.8782 -1.5287 45 1 7.6942 2.8975 -1.9194 46 1 4.5762 -0.1956 1.0085 47 1 3.7092 -0.7790 -0.4324 48 1 5.1715 0.2189 -0.6170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071610569.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:03 Heat of formation + Delta-G solvation = -15.986898 kcal Electronic energy + Delta-G solvation = -30322.237206 eV Core-core repulsion = 26378.234801 eV Total energy + Delta-G solvation = -3944.002405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.98330 -39.47938 -38.15819 -37.41198 -34.35471 -33.47585 -32.71588 -31.49320 -30.09291 -29.81320 -27.84235 -27.66040 -26.18529 -24.95220 -23.89044 -22.36109 -22.20053 -20.88349 -20.38481 -18.79104 -18.34128 -17.41757 -16.41244 -16.34026 -16.23419 -16.11862 -15.27371 -15.00696 -14.58289 -14.29321 -14.05825 -13.99023 -13.58490 -13.45481 -13.13505 -12.98797 -12.80424 -12.65463 -12.64904 -12.41240 -12.20580 -11.97311 -11.70849 -11.61126 -11.23672 -11.11612 -10.99000 -10.87652 -10.72224 -10.40356 -10.33702 -9.99413 -9.89679 -9.55501 -9.47813 -9.40817 -9.08218 -8.51937 -8.42959 -8.40536 -6.48725 -5.76009 -3.27267 0.67711 1.20359 2.91101 3.14335 3.38420 3.45015 3.46694 3.64262 3.94233 4.29007 4.46155 4.50598 4.71839 4.78058 4.87760 4.92733 5.17334 5.19395 5.29810 5.31359 5.35148 5.44718 5.49897 5.57620 5.61012 5.81794 5.94664 6.00384 6.10333 6.15447 6.20934 6.26347 6.33348 6.38491 6.44618 6.50378 6.59109 6.61425 6.71545 6.86938 7.02506 7.10458 7.15468 7.32149 7.54028 7.79625 7.86973 7.99519 8.54076 8.66398 9.23879 9.86315 10.48459 11.30732 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011319 B = 0.004472 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.086124 B = 6260.226906 C = 7161.459846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.063 3.937 4 C 0.034 3.966 5 N -0.458 5.458 6 C 0.103 3.897 7 C -0.142 4.142 8 C 0.562 3.438 9 O -0.532 6.532 10 N -0.691 5.691 11 C 0.119 3.881 12 H 0.078 0.922 13 C -0.118 4.118 14 C -0.131 4.131 15 C 0.165 3.835 16 H 0.025 0.975 17 C -0.134 4.134 18 N -0.579 5.579 19 C -0.258 4.258 20 H 0.061 0.939 21 C 0.018 3.982 22 N -0.891 5.891 23 Si 0.890 3.110 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.167 3.833 28 C -0.013 4.013 29 C -0.113 4.113 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.395 0.605 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.036 0.964 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.254 0.746 44 H 0.029 0.971 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.896 0.014 11.261 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.015 3.985 4 C -0.123 4.123 5 N -0.168 5.168 6 C -0.056 4.056 7 C -0.147 4.147 8 C 0.347 3.653 9 O -0.411 6.411 10 N -0.341 5.341 11 C 0.014 3.986 12 H 0.096 0.904 13 C -0.156 4.156 14 C -0.171 4.171 15 C 0.059 3.941 16 H 0.042 0.958 17 C -0.191 4.191 18 N -0.303 5.303 19 C -0.387 4.387 20 H 0.079 0.921 21 C -0.183 4.183 22 N -0.533 5.533 23 Si 0.720 3.280 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.040 3.960 28 C -0.022 4.022 29 C -0.169 4.169 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.231 0.769 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.704 -0.278 11.220 16.215 hybrid contribution -0.688 -0.626 -0.897 1.292 sum -12.392 -0.904 10.323 16.153 Atomic orbital electron populations 1.23115 0.78222 1.04300 1.01482 1.86092 1.21321 1.25689 1.88755 1.19752 0.92372 0.85925 1.00420 1.22987 1.00477 0.87177 1.01664 1.67495 1.11976 1.25913 1.11383 1.22810 0.88630 0.98193 0.95992 1.20860 0.95492 0.93555 1.04800 1.17750 0.86280 0.83923 0.77334 1.90711 1.62897 1.37244 1.50252 1.45785 1.08387 1.07682 1.72275 1.21814 0.79188 0.96417 1.01212 0.90357 1.21689 1.01266 0.94676 0.98013 1.22079 0.99804 0.97292 0.97884 1.20479 0.95955 0.86894 0.90781 0.95782 1.21761 1.00504 0.96265 1.00571 1.43930 1.66314 0.98174 1.21834 1.18861 1.08060 1.13582 0.98232 0.92149 1.25211 0.95053 1.00961 0.97042 1.70004 1.16576 1.25382 1.41345 0.86581 0.80861 0.78734 0.81817 1.20799 1.21632 1.21060 1.21043 0.95592 0.93717 0.85607 1.19856 0.90677 0.96100 0.95532 1.20922 0.99864 0.92378 1.03753 0.92409 0.87930 0.92489 0.82375 0.82270 0.76911 0.90939 0.92908 0.92766 0.92796 0.94544 0.91993 0.93069 0.93615 0.95303 0.90354 0.90407 0.91725 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 101.05 0.99 1.17 16 2 O -0.31 -3.71 9.58 -19.50 -0.19 -3.89 16 3 C 0.06 0.87 6.68 -39.13 -0.26 0.61 16 4 C 0.03 0.44 10.21 -17.30 -0.18 0.26 16 5 N -0.46 -6.66 10.34 -12.79 -0.13 -6.79 16 6 C 0.10 1.53 10.69 -17.13 -0.18 1.34 16 7 C -0.14 -2.35 5.89 -104.84 -0.62 -2.96 16 8 C 0.56 10.38 7.69 -12.33 -0.09 10.29 16 9 O -0.53 -11.15 13.16 5.32 0.07 -11.08 16 10 N -0.69 -11.89 4.87 -54.63 -0.27 -12.16 16 11 C 0.12 2.16 2.81 -67.81 -0.19 1.97 16 12 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 13 C -0.12 -1.78 5.59 -26.69 -0.15 -1.93 16 14 C -0.13 -2.02 5.21 -26.61 -0.14 -2.16 16 15 C 0.17 3.21 3.49 -67.60 -0.24 2.97 16 16 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 17 C -0.13 -2.42 8.03 37.16 0.30 -2.12 16 18 N -0.58 -13.49 2.84 -164.78 -0.47 -13.96 16 19 C -0.26 -6.74 8.29 -15.06 -0.12 -6.86 16 20 H 0.06 1.57 6.54 -52.49 -0.34 1.23 16 21 C 0.02 0.50 4.86 -17.43 -0.08 0.42 16 22 N -0.89 -25.95 11.96 55.49 0.66 -25.28 16 23 Si 0.89 22.06 29.59 -169.99 -5.03 17.03 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 27 C 0.17 3.85 4.89 -3.71 -0.02 3.83 16 28 C -0.01 -0.20 5.97 -103.76 -0.62 -0.82 16 29 C -0.11 -1.78 8.70 36.01 0.31 -1.46 16 30 H 0.06 0.38 7.68 -51.93 -0.40 -0.02 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 33 H 0.16 1.49 6.30 -52.49 -0.33 1.16 16 34 H 0.16 2.01 6.46 -52.49 -0.34 1.67 16 35 H 0.39 6.08 4.87 -40.82 -0.20 5.88 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.81 6.40 -51.93 -0.33 0.47 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 1.25 7.70 -51.93 -0.40 0.85 16 42 H 0.05 0.93 7.40 -51.93 -0.38 0.54 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 2.13 6.82 -51.93 -0.35 1.77 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 47 H 0.06 0.92 7.46 -51.93 -0.39 0.53 16 48 H 0.10 1.89 5.94 -51.93 -0.31 1.58 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -31.78 374.73 -8.08 -39.86 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.09 Total: 6.09 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.29 Total: 4.54 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.20 Total: -58.19 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.12 Total: -14.97 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.78 -8.08 -39.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071610569.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.873 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds