Wall clock time and date at job start Tue Mar 31 2020 17:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35918 * 117.00042 * 2 1 4 4 C 1.38852 * 120.40916 * 0.02562 * 3 2 1 5 5 N 1.31872 * 121.00270 * 179.97438 * 4 3 2 6 6 C 1.31687 * 121.94066 * 359.68254 * 5 4 3 7 7 C 1.39521 * 120.68848 * 0.58843 * 6 5 4 8 8 C 1.47856 * 120.52864 * 179.72897 * 7 6 5 9 9 O 1.21552 * 119.99948 * 173.55062 * 8 7 6 10 10 N 1.34780 * 120.00124 * 353.81771 * 8 7 6 11 11 C 1.46494 * 120.00032 * 179.72627 * 10 8 7 12 12 H 1.09002 * 109.50342 * 35.06419 * 11 10 8 13 13 C 1.53041 * 109.49808 * 155.16758 * 11 10 8 14 14 C 1.53036 * 109.53781 * 58.58682 * 13 11 10 15 15 C 1.53191 * 109.31503 * 61.36813 * 14 13 11 16 16 H 1.08992 * 109.70150 * 65.21993 * 15 14 13 17 17 C 1.52999 * 109.58766 * 185.57805 * 15 14 13 18 18 N 1.46926 * 108.77397 * 305.36360 * 15 14 13 19 19 C 1.36941 * 120.63234 * 233.58883 * 18 15 14 20 20 H 1.08005 * 119.99817 * 28.08730 * 19 18 15 21 21 C 1.38802 * 120.00041 * 208.09058 * 19 18 15 22 22 N 1.31622 * 120.00006 * 18.74059 * 21 19 18 23 23 Si 1.86805 * 120.00308 * 198.73884 * 21 19 18 24 24 H 1.48495 * 109.47224 * 94.98967 * 23 21 19 25 25 H 1.48499 * 109.47287 * 214.99573 * 23 21 19 26 26 H 1.48500 * 109.46632 * 334.99688 * 23 21 19 27 27 C 1.46929 * 118.73901 * 53.60572 * 18 15 14 28 28 C 1.38844 * 120.40502 * 180.02562 * 3 2 1 29 29 C 1.50702 * 120.88020 * 359.97438 * 28 3 2 30 30 H 1.08996 * 109.46811 * 59.99432 * 1 2 3 31 31 H 1.08991 * 109.47156 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46191 * 299.99690 * 1 2 3 33 33 H 1.08003 * 119.49463 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.65365 * 180.28896 * 6 5 4 35 35 H 0.96995 * 119.99569 * 359.73133 * 10 8 7 36 36 H 1.09004 * 109.45890 * 178.60786 * 13 11 10 37 37 H 1.08997 * 109.45553 * 298.56196 * 13 11 10 38 38 H 1.09005 * 109.49688 * 301.40956 * 14 13 11 39 39 H 1.09000 * 109.49521 * 181.32439 * 14 13 11 40 40 H 1.08995 * 109.47398 * 179.28788 * 17 15 14 41 41 H 1.09009 * 109.47054 * 299.29235 * 17 15 14 42 42 H 1.09008 * 109.47159 * 59.28706 * 17 15 14 43 43 H 0.97003 * 119.99887 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.58562 * 186.60215 * 27 18 15 45 45 H 1.09004 * 109.58277 * 66.18080 * 27 18 15 46 46 H 1.08997 * 109.47083 * 263.91369 * 29 28 3 47 47 H 1.09002 * 109.47045 * 23.90976 * 29 28 3 48 48 H 1.08996 * 109.47034 * 143.91271 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8847 3.5620 0.0010 6 6 3.1954 3.6890 0.0073 7 6 4.0199 2.5635 0.0013 8 6 5.4912 2.7103 0.0023 9 8 6.1997 1.7291 0.1153 10 7 6.0466 3.9325 -0.1167 11 6 7.5043 4.0785 -0.1097 12 1 7.9583 3.2213 -0.6069 13 6 7.8926 5.3622 -0.8469 14 6 7.2287 6.5627 -0.1687 15 6 7.7249 6.6664 1.2769 16 1 8.7917 6.8899 1.2840 17 6 6.9632 7.7775 2.0022 18 7 7.4859 5.3836 1.9521 19 6 6.7940 5.3348 3.1328 20 1 6.0533 6.0885 3.3562 21 6 7.0445 4.3169 4.0425 22 7 8.1631 3.6274 3.9670 23 14 5.7942 3.9254 5.3741 24 1 4.9146 2.8196 4.9175 25 1 6.5025 3.5152 6.6131 26 1 4.9714 5.1304 5.6501 27 6 8.0036 4.1540 1.3366 28 6 3.4321 1.2935 -0.0005 29 6 4.2810 0.0483 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 0.2198 2.3226 0.0005 34 1 3.6368 4.6748 0.0122 35 1 5.4812 4.7154 -0.2070 36 1 8.9756 5.4830 -0.8199 37 1 7.5601 5.3006 -1.8831 38 1 6.1467 6.4307 -0.1735 39 1 7.4867 7.4739 -0.7083 40 1 7.3088 7.8413 3.0339 41 1 7.1418 8.7283 1.4997 42 1 5.8962 7.5547 1.9895 43 1 8.3381 2.9157 4.6026 44 1 7.6449 3.2879 1.8927 45 1 9.0935 4.1714 1.3464 46 1 4.5761 -0.1903 1.0212 47 1 3.7093 -0.7812 -0.4167 48 1 5.1716 0.2158 -0.6062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071610570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:07 Heat of formation + Delta-G solvation = -12.310838 kcal Electronic energy + Delta-G solvation = -30381.773240 eV Core-core repulsion = 26437.930241 eV Total energy + Delta-G solvation = -3943.842999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.96868 -39.46543 -38.15554 -37.41284 -34.35866 -33.46833 -32.75965 -31.50182 -30.06167 -29.75454 -27.83974 -27.65431 -26.19516 -24.99528 -23.87667 -22.34641 -22.17719 -20.87298 -20.38039 -18.77443 -18.32846 -17.39863 -16.40049 -16.33301 -16.22936 -16.11534 -15.28948 -15.05162 -14.54453 -14.23064 -14.03024 -13.99070 -13.56079 -13.48324 -13.15947 -13.00376 -12.80138 -12.64844 -12.54156 -12.43985 -12.20461 -11.92141 -11.78177 -11.61362 -11.21915 -11.15633 -10.97640 -10.86705 -10.70723 -10.36948 -10.31874 -9.96537 -9.87519 -9.53443 -9.44821 -9.38643 -9.08500 -8.50515 -8.42967 -8.37248 -6.61591 -5.74604 -3.15766 0.69452 1.21794 2.92429 3.15977 3.40053 3.47034 3.48732 3.67751 3.94630 4.31333 4.47524 4.52101 4.72986 4.79807 4.88146 4.94452 5.17910 5.21181 5.30316 5.31380 5.35714 5.44616 5.49635 5.59282 5.61790 5.82548 5.97267 6.00002 6.09675 6.13701 6.20749 6.27527 6.32314 6.34950 6.43116 6.49376 6.58408 6.59810 6.70008 6.88132 7.03274 7.05347 7.12034 7.36564 7.66766 7.81963 7.86245 8.02391 8.48912 8.69135 9.24248 9.89626 10.44957 11.33604 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.004460 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.812208 B = 6276.466116 C = 7061.270812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.061 3.939 4 C 0.034 3.966 5 N -0.458 5.458 6 C 0.105 3.895 7 C -0.143 4.143 8 C 0.562 3.438 9 O -0.531 6.531 10 N -0.691 5.691 11 C 0.119 3.881 12 H 0.078 0.922 13 C -0.119 4.119 14 C -0.131 4.131 15 C 0.165 3.835 16 H 0.025 0.975 17 C -0.136 4.136 18 N -0.582 5.582 19 C -0.251 4.251 20 H 0.069 0.931 21 C 0.008 3.992 22 N -0.896 5.896 23 Si 0.890 3.110 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.162 3.838 28 C -0.014 4.014 29 C -0.112 4.112 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.394 0.606 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.052 0.948 43 H 0.253 0.747 44 H 0.095 0.905 45 H 0.026 0.974 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.251 -1.705 -11.866 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.014 3.986 4 C -0.123 4.123 5 N -0.168 5.168 6 C -0.055 4.055 7 C -0.148 4.148 8 C 0.347 3.653 9 O -0.409 6.409 10 N -0.342 5.342 11 C 0.014 3.986 12 H 0.096 0.904 13 C -0.157 4.157 14 C -0.170 4.170 15 C 0.058 3.942 16 H 0.043 0.957 17 C -0.194 4.194 18 N -0.306 5.306 19 C -0.381 4.381 20 H 0.087 0.913 21 C -0.191 4.191 22 N -0.540 5.540 23 Si 0.721 3.279 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.035 3.965 28 C -0.023 4.023 29 C -0.168 4.168 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.176 0.824 34 H 0.179 0.821 35 H 0.230 0.770 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.113 0.887 45 H 0.044 0.956 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.093 -1.972 -11.654 16.210 hybrid contribution -0.751 -0.434 0.883 1.238 sum -11.844 -2.406 -10.771 16.189 Atomic orbital electron populations 1.23113 0.78236 1.04275 1.01488 1.86088 1.21310 1.25701 1.88797 1.19744 0.92366 0.85913 1.00556 1.22994 1.00480 0.87196 1.01631 1.67507 1.12000 1.25882 1.11371 1.22852 0.88583 0.98315 0.95704 1.20869 0.95540 0.93541 1.04824 1.17744 0.86253 0.83960 0.77326 1.90715 1.62878 1.37636 1.49718 1.45767 1.08399 1.07505 1.72485 1.21821 0.79155 0.96932 1.00727 0.90395 1.21696 1.01140 0.95008 0.97856 1.22070 0.99796 0.96698 0.98444 1.20458 0.96043 0.87703 0.89953 0.95735 1.21803 1.00490 0.96113 1.00957 1.44071 1.64434 0.99257 1.22819 1.19094 1.13526 1.11600 0.93838 0.91314 1.24969 0.96024 1.00868 0.97222 1.70023 1.21982 1.24171 1.37818 0.86457 0.81426 0.78413 0.81641 1.21644 1.21825 1.20425 1.21171 0.95466 0.91790 0.88062 1.19852 0.90677 0.96074 0.95679 1.20906 0.99430 0.92268 1.04201 0.92492 0.87945 0.92417 0.82389 0.82130 0.76965 0.90981 0.92938 0.92743 0.92753 0.92035 0.94417 0.92933 0.93722 0.88676 0.95573 0.90116 0.91822 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.82 101.05 0.99 1.17 16 2 O -0.31 -3.71 9.57 -19.48 -0.19 -3.89 16 3 C 0.06 0.86 6.68 -39.13 -0.26 0.60 16 4 C 0.03 0.45 10.21 -17.31 -0.18 0.27 16 5 N -0.46 -6.83 10.34 -12.80 -0.13 -6.96 16 6 C 0.10 1.60 10.69 -17.14 -0.18 1.42 16 7 C -0.14 -2.40 5.89 -104.84 -0.62 -3.01 16 8 C 0.56 10.56 7.69 -12.32 -0.09 10.46 16 9 O -0.53 -11.33 13.17 5.32 0.07 -11.26 16 10 N -0.69 -12.05 4.87 -54.63 -0.27 -12.31 16 11 C 0.12 2.18 2.81 -67.81 -0.19 1.99 16 12 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 13 C -0.12 -1.80 5.58 -26.69 -0.15 -1.95 16 14 C -0.13 -2.00 5.21 -26.61 -0.14 -2.14 16 15 C 0.17 3.16 3.50 -67.60 -0.24 2.93 16 16 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 17 C -0.14 -2.42 7.94 37.16 0.29 -2.12 16 18 N -0.58 -13.53 2.91 -164.78 -0.48 -14.01 16 19 C -0.25 -6.55 8.60 -15.06 -0.13 -6.68 16 20 H 0.07 1.77 6.20 -52.48 -0.33 1.44 16 21 C 0.01 0.23 4.87 -17.43 -0.08 0.15 16 22 N -0.90 -26.19 11.31 55.49 0.63 -25.56 16 23 Si 0.89 22.24 29.59 -169.99 -5.03 17.21 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.16 3.75 4.91 -3.71 -0.02 3.73 16 28 C -0.01 -0.22 5.97 -103.76 -0.62 -0.84 16 29 C -0.11 -1.74 8.70 36.01 0.31 -1.43 16 30 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 33 H 0.16 1.51 6.30 -52.48 -0.33 1.18 16 34 H 0.16 2.17 6.47 -52.48 -0.34 1.83 16 35 H 0.39 6.12 4.87 -40.82 -0.20 5.93 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.21 7.61 -51.93 -0.40 0.82 16 41 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.05 0.94 7.45 -51.92 -0.39 0.55 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.10 2.62 6.12 -51.93 -0.32 2.30 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.06 0.85 7.45 -51.93 -0.39 0.47 16 48 H 0.10 1.65 5.95 -51.93 -0.31 1.34 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -31.93 373.33 -8.10 -40.03 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.03 Total: 6.57 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.30 Total: 4.56 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.25 Total: -58.84 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.12 Total: -15.15 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.93 -8.10 -40.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071610570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.719 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds