Wall clock time and date at job start Tue Mar 31 2020 17:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35918 * 117.00042 * 2 1 4 4 C 1.38852 * 120.40916 * 0.02562 * 3 2 1 5 5 N 1.31872 * 121.00270 * 179.97438 * 4 3 2 6 6 C 1.31687 * 121.94066 * 359.68254 * 5 4 3 7 7 C 1.39521 * 120.68848 * 0.58843 * 6 5 4 8 8 C 1.47856 * 120.52864 * 179.72897 * 7 6 5 9 9 O 1.21552 * 119.99948 * 173.55062 * 8 7 6 10 10 N 1.34780 * 120.00124 * 353.81771 * 8 7 6 11 11 C 1.46494 * 120.00032 * 179.72627 * 10 8 7 12 12 H 1.09002 * 109.50342 * 35.06419 * 11 10 8 13 13 C 1.53041 * 109.49808 * 155.16758 * 11 10 8 14 14 C 1.53036 * 109.53781 * 58.58682 * 13 11 10 15 15 C 1.53191 * 109.31503 * 61.36813 * 14 13 11 16 16 H 1.08992 * 109.70150 * 65.21993 * 15 14 13 17 17 C 1.52999 * 109.58766 * 185.57805 * 15 14 13 18 18 N 1.46926 * 108.77397 * 305.36360 * 15 14 13 19 19 C 1.36941 * 120.63234 * 233.58883 * 18 15 14 20 20 H 1.08005 * 119.99817 * 28.08730 * 19 18 15 21 21 C 1.38802 * 120.00041 * 208.09058 * 19 18 15 22 22 N 1.31622 * 120.00006 * 18.74059 * 21 19 18 23 23 Si 1.86805 * 120.00308 * 198.73884 * 21 19 18 24 24 H 1.48495 * 109.47224 * 94.98967 * 23 21 19 25 25 H 1.48499 * 109.47287 * 214.99573 * 23 21 19 26 26 H 1.48500 * 109.46632 * 334.99688 * 23 21 19 27 27 C 1.46929 * 118.73901 * 53.60572 * 18 15 14 28 28 C 1.38844 * 120.40502 * 180.02562 * 3 2 1 29 29 C 1.50702 * 120.88020 * 359.97438 * 28 3 2 30 30 H 1.08996 * 109.46811 * 59.99432 * 1 2 3 31 31 H 1.08991 * 109.47156 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46191 * 299.99690 * 1 2 3 33 33 H 1.08003 * 119.49463 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.65365 * 180.28896 * 6 5 4 35 35 H 0.96995 * 119.99569 * 359.73133 * 10 8 7 36 36 H 1.09004 * 109.45890 * 178.60786 * 13 11 10 37 37 H 1.08997 * 109.45553 * 298.56196 * 13 11 10 38 38 H 1.09005 * 109.49688 * 301.40956 * 14 13 11 39 39 H 1.09000 * 109.49521 * 181.32439 * 14 13 11 40 40 H 1.08995 * 109.47398 * 179.28788 * 17 15 14 41 41 H 1.09009 * 109.47054 * 299.29235 * 17 15 14 42 42 H 1.09008 * 109.47159 * 59.28706 * 17 15 14 43 43 H 0.97003 * 119.99887 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.58562 * 186.60215 * 27 18 15 45 45 H 1.09004 * 109.58277 * 66.18080 * 27 18 15 46 46 H 1.08997 * 109.47083 * 263.91369 * 29 28 3 47 47 H 1.09002 * 109.47045 * 23.90976 * 29 28 3 48 48 H 1.08996 * 109.47034 * 143.91271 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8847 3.5620 0.0010 6 6 3.1954 3.6890 0.0073 7 6 4.0199 2.5635 0.0013 8 6 5.4912 2.7103 0.0023 9 8 6.1997 1.7291 0.1153 10 7 6.0466 3.9325 -0.1167 11 6 7.5043 4.0785 -0.1097 12 1 7.9583 3.2213 -0.6069 13 6 7.8926 5.3622 -0.8469 14 6 7.2287 6.5627 -0.1687 15 6 7.7249 6.6664 1.2769 16 1 8.7917 6.8899 1.2840 17 6 6.9632 7.7775 2.0022 18 7 7.4859 5.3836 1.9521 19 6 6.7940 5.3348 3.1328 20 1 6.0533 6.0885 3.3562 21 6 7.0445 4.3169 4.0425 22 7 8.1631 3.6274 3.9670 23 14 5.7942 3.9254 5.3741 24 1 4.9146 2.8196 4.9175 25 1 6.5025 3.5152 6.6131 26 1 4.9714 5.1304 5.6501 27 6 8.0036 4.1540 1.3366 28 6 3.4321 1.2935 -0.0005 29 6 4.2810 0.0483 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 0.2198 2.3226 0.0005 34 1 3.6368 4.6748 0.0122 35 1 5.4812 4.7154 -0.2070 36 1 8.9756 5.4830 -0.8199 37 1 7.5601 5.3006 -1.8831 38 1 6.1467 6.4307 -0.1735 39 1 7.4867 7.4739 -0.7083 40 1 7.3088 7.8413 3.0339 41 1 7.1418 8.7283 1.4997 42 1 5.8962 7.5547 1.9895 43 1 8.3381 2.9157 4.6026 44 1 7.6449 3.2879 1.8927 45 1 9.0935 4.1714 1.3464 46 1 4.5761 -0.1903 1.0212 47 1 3.7093 -0.7812 -0.4167 48 1 5.1716 0.2158 -0.6062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071610570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:06 Heat of formation + Delta-G solvation = -33.648298 kcal Electronic energy + Delta-G solvation = -30382.698501 eV Core-core repulsion = 26437.930241 eV Total energy + Delta-G solvation = -3944.768261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.11551 -40.82201 -39.37645 -38.76664 -35.93053 -34.74396 -34.48446 -32.86531 -31.75888 -31.12326 -28.91669 -28.48612 -27.81470 -26.75274 -25.07383 -23.88763 -23.47270 -22.22133 -21.88983 -20.37284 -19.47496 -18.55432 -18.08882 -17.63032 -17.38650 -17.01930 -16.94183 -16.54164 -16.00293 -15.76095 -15.52320 -15.17421 -15.02611 -14.90839 -14.57903 -14.33954 -14.11564 -13.90843 -13.85517 -13.73655 -13.63033 -13.16420 -12.98828 -12.87762 -12.74581 -12.60168 -12.54555 -12.37607 -12.37287 -12.09982 -12.05013 -11.55945 -11.21311 -11.11591 -11.02492 -10.64981 -10.53262 -10.40756 -9.91019 -9.53399 -8.58171 -7.82647 -5.23897 -0.48474 0.07665 1.36970 1.41235 1.46912 1.81936 1.96685 2.41412 2.49434 2.70634 3.27728 3.33052 3.41732 3.63090 3.65480 3.68646 3.98068 4.07764 4.12311 4.14391 4.21720 4.35477 4.39670 4.51435 4.52802 4.63522 4.67057 4.68812 4.75371 4.76617 4.84318 4.98368 5.01384 5.06970 5.08229 5.15236 5.17269 5.29771 5.34710 5.39621 5.59514 5.63978 5.69430 5.75954 5.76258 6.13279 6.44384 6.60361 6.70836 7.19558 7.27560 7.94936 8.44585 9.22774 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.004460 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.812208 B = 6276.466116 C = 7061.270812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.068 3.932 4 C 0.044 3.956 5 N -0.465 5.465 6 C 0.103 3.897 7 C -0.161 4.161 8 C 0.556 3.444 9 O -0.567 6.567 10 N -0.682 5.682 11 C 0.129 3.871 12 H 0.070 0.930 13 C -0.111 4.111 14 C -0.120 4.120 15 C 0.154 3.846 16 H 0.014 0.986 17 C -0.129 4.129 18 N -0.594 5.594 19 C -0.232 4.232 20 H 0.077 0.923 21 C -0.050 4.050 22 N -0.933 5.933 23 Si 0.939 3.061 24 H -0.304 1.304 25 H -0.300 1.300 26 H -0.260 1.260 27 C 0.171 3.829 28 C -0.039 4.039 29 C -0.103 4.103 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.198 0.802 34 H 0.176 0.824 35 H 0.406 0.594 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.242 0.758 44 H 0.046 0.954 45 H -0.001 1.001 46 H 0.060 0.940 47 H 0.082 0.918 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.306 0.262 -13.883 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.020 3.980 4 C -0.114 4.114 5 N -0.175 5.175 6 C -0.056 4.056 7 C -0.167 4.167 8 C 0.342 3.658 9 O -0.448 6.448 10 N -0.333 5.333 11 C 0.023 3.977 12 H 0.088 0.912 13 C -0.149 4.149 14 C -0.159 4.159 15 C 0.049 3.951 16 H 0.032 0.968 17 C -0.187 4.187 18 N -0.318 5.318 19 C -0.363 4.363 20 H 0.095 0.905 21 C -0.245 4.245 22 N -0.580 5.580 23 Si 0.770 3.230 24 H -0.232 1.232 25 H -0.227 1.227 26 H -0.184 1.184 27 C 0.044 3.956 28 C -0.048 4.048 29 C -0.159 4.159 30 H 0.094 0.906 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.215 0.785 34 H 0.193 0.807 35 H 0.244 0.756 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.017 0.983 46 H 0.079 0.921 47 H 0.101 0.899 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.181 0.057 -13.696 19.715 hybrid contribution 0.114 -1.066 1.477 1.825 sum -14.068 -1.009 -12.219 18.661 Atomic orbital electron populations 1.23524 0.75507 1.06368 1.02909 1.86089 1.24065 1.24751 1.88313 1.19728 0.91603 0.87123 0.99507 1.23604 1.02162 0.86205 0.99389 1.67599 1.11517 1.26702 1.11640 1.23017 0.88808 0.98319 0.95464 1.20757 0.94237 0.94688 1.06967 1.18193 0.87294 0.83796 0.76469 1.90699 1.63997 1.38836 1.51304 1.45655 1.08020 1.07677 1.71954 1.21539 0.79681 0.98958 0.97496 0.91167 1.21675 1.01483 0.92635 0.99058 1.21968 1.00161 0.98291 0.95475 1.20775 0.96003 0.85961 0.92401 0.96789 1.21737 0.99975 0.97366 0.99603 1.44291 1.64131 1.00962 1.22397 1.19420 1.12573 1.10343 0.93946 0.90511 1.25574 0.97380 1.02003 0.99585 1.70174 1.23902 1.25125 1.38848 0.85647 0.79673 0.78187 0.79527 1.23182 1.22674 1.18445 1.20853 0.93767 0.90291 0.90649 1.20019 0.92133 0.95767 0.96869 1.20746 0.99177 0.93263 1.02706 0.90561 0.85761 0.91341 0.78531 0.80714 0.75608 0.90680 0.89472 0.91788 0.89040 0.94768 0.90605 0.92894 0.94927 0.93594 0.98345 0.92144 0.89921 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.82 113.37 1.11 1.23 16 2 O -0.32 -7.01 9.57 -92.62 -0.89 -7.90 16 3 C 0.07 1.79 6.68 22.56 0.15 1.94 16 4 C 0.04 1.01 10.21 84.83 0.87 1.88 16 5 N -0.47 -12.66 10.34 -194.39 -2.01 -14.67 16 6 C 0.10 2.98 10.69 85.02 0.91 3.89 16 7 C -0.16 -5.43 5.89 -20.01 -0.12 -5.55 16 8 C 0.56 21.47 7.69 86.79 0.67 22.13 16 9 O -0.57 -25.69 13.17 -3.88 -0.05 -25.75 16 10 N -0.68 -23.56 4.87 -445.03 -2.17 -25.73 16 11 C 0.13 4.75 2.81 45.07 0.13 4.88 16 12 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 13 C -0.11 -3.04 5.58 30.62 0.17 -2.87 16 14 C -0.12 -3.22 5.21 30.67 0.16 -3.06 16 15 C 0.15 5.62 3.50 44.97 0.16 5.78 16 16 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 17 C -0.13 -4.27 7.94 71.98 0.57 -3.70 16 18 N -0.59 -27.82 2.91 -675.24 -1.96 -29.79 16 19 C -0.23 -12.24 8.60 84.03 0.72 -11.51 16 20 H 0.08 3.89 6.20 -2.91 -0.02 3.87 16 21 C -0.05 -2.88 4.87 84.86 0.41 -2.46 16 22 N -0.93 -57.59 11.31 21.65 0.24 -57.35 16 23 Si 0.94 47.05 29.59 68.60 2.03 49.08 16 24 H -0.30 -15.75 7.11 99.48 0.71 -15.04 16 25 H -0.30 -15.24 7.11 99.48 0.71 -14.54 16 26 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 27 C 0.17 8.29 4.91 86.36 0.42 8.72 16 28 C -0.04 -1.25 5.97 -19.30 -0.12 -1.37 16 29 C -0.10 -3.33 8.70 71.24 0.62 -2.71 16 30 H 0.08 0.58 7.67 -2.39 -0.02 0.56 16 31 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.64 7.67 -2.39 -0.02 0.62 16 33 H 0.20 2.86 6.30 -2.91 -0.02 2.85 16 34 H 0.18 4.36 6.47 -2.91 -0.02 4.34 16 35 H 0.41 11.88 4.87 -92.71 -0.45 11.42 16 36 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 1.63 6.40 -2.38 -0.02 1.62 16 39 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.03 1.29 7.61 -2.39 -0.02 1.27 16 41 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.05 1.73 7.45 -2.38 -0.02 1.71 16 43 H 0.24 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.05 2.69 6.12 -2.39 -0.01 2.68 16 45 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 46 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.08 2.25 7.45 -2.39 -0.02 2.23 16 48 H 0.08 2.93 5.95 -2.39 -0.01 2.92 16 Total: -1.00 -74.43 373.33 2.57 -71.86 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.54 Total: 23.01 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 6.84 Total: 17.23 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -5.90 Total: -127.54 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.94 Total: -33.65 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -74.43 2.57 -71.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071610570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.214 kcal (2) G-P(sol) polarization free energy of solvation -74.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds