Wall clock time and date at job start Tue Mar 31 2020 17:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38350 * 119.40689 * 2 1 4 4 C 1.38342 * 119.45693 * 179.76126 * 3 2 1 5 5 C 1.50699 * 120.82505 * 180.23698 * 4 3 2 6 6 C 1.39982 * 118.34998 * 0.48505 * 4 3 2 7 7 C 1.47527 * 120.59844 * 179.74913 * 6 4 3 8 8 O 1.21592 * 120.00361 * 269.72354 * 7 6 4 9 9 N 1.34779 * 119.99602 * 89.72376 * 7 6 4 10 10 C 1.46498 * 119.99852 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.52729 * 325.08146 * 10 9 7 12 12 C 1.53033 * 109.49998 * 205.00221 * 10 9 7 13 13 C 1.53037 * 109.53121 * 178.67870 * 12 10 9 14 14 C 1.53193 * 109.31371 * 61.37045 * 13 12 10 15 15 H 1.08999 * 109.58763 * 65.15604 * 14 13 12 16 16 C 1.53003 * 109.58828 * 185.58229 * 14 13 12 17 17 N 1.46925 * 108.77426 * 305.36859 * 14 13 12 18 18 C 1.36939 * 120.63220 * 233.58810 * 17 14 13 19 19 H 1.08007 * 120.00024 * 29.04874 * 18 17 14 20 20 C 1.38809 * 120.00052 * 209.05097 * 18 17 14 21 21 N 1.31618 * 120.00290 * 15.06168 * 20 18 17 22 22 Si 1.86802 * 120.00128 * 195.05654 * 20 18 17 23 23 H 1.48502 * 109.46833 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47183 * 119.99971 * 22 20 18 25 25 H 1.48500 * 109.47259 * 240.00056 * 22 20 18 26 26 C 1.46927 * 118.74015 * 53.60656 * 17 14 13 27 27 C 1.40282 * 118.80387 * 359.48409 * 6 4 3 28 28 O 1.35424 * 119.79907 * 180.27815 * 27 6 4 29 29 N 1.31886 * 119.40753 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46887 * 270.01674 * 1 2 3 31 31 H 1.09001 * 109.46995 * 30.01747 * 1 2 3 32 32 H 1.09003 * 109.46964 * 150.01809 * 1 2 3 33 33 H 1.08004 * 120.27597 * 0.02562 * 3 2 1 34 34 H 1.09006 * 109.47533 * 270.25423 * 5 4 3 35 35 H 1.09003 * 109.47450 * 30.25609 * 5 4 3 36 36 H 1.09000 * 109.47325 * 150.25237 * 5 4 3 37 37 H 0.97001 * 119.99895 * 0.02562 * 9 7 6 38 38 H 1.09003 * 109.46398 * 58.66163 * 12 10 9 39 39 H 1.09006 * 109.46112 * 298.69092 * 12 10 9 40 40 H 1.09007 * 109.50317 * 181.32441 * 13 12 10 41 41 H 1.09002 * 109.49763 * 301.42163 * 13 12 10 42 42 H 1.08998 * 109.46950 * 59.99883 * 16 14 13 43 43 H 1.08994 * 109.46869 * 179.97438 * 16 14 13 44 44 H 1.08994 * 109.46918 * 299.99801 * 16 14 13 45 45 H 0.96998 * 120.00359 * 179.97438 * 21 20 18 46 46 H 1.08993 * 109.58839 * 66.17756 * 26 17 14 47 47 H 1.09003 * 109.58764 * 186.46264 * 26 17 14 48 48 H 0.96701 * 114.01091 * 89.99391 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5697 1.2065 0.0050 5 6 4.3408 2.5012 0.0105 6 6 4.2356 -0.0249 -0.0005 7 6 5.7097 -0.0814 -0.0011 8 8 6.3169 -0.1052 -1.0543 9 7 6.3835 -0.1067 1.1659 10 6 7.8474 -0.1634 1.1654 11 1 8.1884 -0.7657 0.3234 12 6 8.3348 -0.7915 2.4731 13 6 9.8624 -0.8813 2.4594 14 6 10.4519 0.5285 2.3511 15 1 10.2065 1.0971 3.2481 16 6 11.9715 0.4387 2.1969 17 7 9.8758 1.1928 1.1740 18 6 10.6861 1.7441 0.2176 19 1 11.6684 1.3321 0.0391 20 6 10.2451 2.8326 -0.5224 21 7 9.1960 3.5190 -0.1220 22 14 11.1408 3.3232 -2.0865 23 1 12.2790 2.3974 -2.3163 24 1 10.2043 3.2506 -3.2367 25 1 11.6508 4.7112 -1.9503 26 6 8.4137 1.2547 1.0426 27 6 3.4758 -1.2041 0.0003 28 8 4.0991 -2.4063 0.0007 29 7 2.1546 -1.1489 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5136 33 1 1.6411 2.1376 0.0004 34 1 4.5266 2.8180 -1.0158 35 1 3.7622 3.2666 0.5278 36 1 5.2914 2.3559 0.5236 37 1 5.8992 -0.0881 2.0061 38 1 7.9131 -1.7915 2.5749 39 1 8.0148 -0.1753 3.3133 40 1 10.2077 -1.3502 3.3809 41 1 10.1842 -1.4767 1.6049 42 1 12.2125 -0.1249 1.2957 43 1 12.3887 1.4427 2.1196 44 1 12.3955 -0.0655 3.0652 45 1 8.8880 4.2799 -0.6389 46 1 8.0021 1.8824 1.8329 47 1 8.1515 1.6722 0.0705 48 1 4.2805 -2.7552 0.8842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071721423.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:19 Heat of formation + Delta-G solvation = -55.931626 kcal Electronic energy + Delta-G solvation = -29847.533282 eV Core-core repulsion = 25901.798744 eV Total energy + Delta-G solvation = -3945.734538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.07788 -40.58241 -39.16926 -38.47416 -36.04701 -35.30447 -34.65078 -32.90945 -32.17757 -31.72214 -29.50281 -28.51927 -27.66682 -26.68519 -24.59511 -23.98127 -23.02205 -22.14229 -21.53493 -20.94516 -19.56269 -18.84322 -18.40592 -18.16135 -17.45830 -16.99180 -16.61862 -15.94195 -15.80273 -15.42381 -15.35287 -15.15390 -14.97829 -14.77471 -14.51207 -14.29150 -14.12253 -14.03115 -13.95173 -13.52881 -13.26404 -13.10793 -13.01215 -12.81881 -12.78244 -12.72886 -12.64132 -12.56892 -12.27810 -12.12892 -11.99798 -11.70971 -11.52285 -11.23023 -11.14395 -10.65072 -10.55130 -10.52767 -10.15729 -9.87320 -8.62538 -7.85627 -5.30915 -0.31297 -0.00585 1.38634 1.43874 1.45054 1.51047 2.03574 2.35036 2.49214 2.49972 3.30355 3.39415 3.51999 3.58557 3.76001 3.94404 3.97610 4.08222 4.17605 4.23819 4.27400 4.38125 4.48248 4.54634 4.58919 4.60853 4.70449 4.79066 4.83541 4.87886 4.94909 4.99910 5.00363 5.05787 5.12673 5.16881 5.17638 5.28259 5.31995 5.41906 5.50793 5.54201 5.61366 5.70771 5.78802 6.39051 6.43705 6.50842 6.76824 7.14031 7.19450 7.89878 8.38616 9.19577 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.003655 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.377691 B = 7658.444155 C = 8858.370486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.163 3.837 3 C -0.174 4.174 4 C 0.007 3.993 5 C -0.122 4.122 6 C -0.220 4.220 7 C 0.575 3.425 8 O -0.579 6.579 9 N -0.695 5.695 10 C 0.129 3.871 11 H 0.049 0.951 12 C -0.107 4.107 13 C -0.118 4.118 14 C 0.153 3.847 15 H 0.024 0.976 16 C -0.130 4.130 17 N -0.603 5.603 18 C -0.250 4.250 19 H 0.073 0.927 20 C -0.051 4.051 21 N -0.930 5.930 22 Si 0.952 3.048 23 H -0.265 1.265 24 H -0.302 1.302 25 H -0.287 1.287 26 C 0.181 3.819 27 C 0.346 3.654 28 O -0.488 6.488 29 N -0.523 5.523 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.183 0.817 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.050 0.950 37 H 0.412 0.588 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.038 0.962 44 H 0.079 0.921 45 H 0.245 0.755 46 H 0.001 0.999 47 H 0.044 0.956 48 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.432 -7.330 9.398 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.026 3.974 3 C -0.193 4.193 4 C -0.001 4.001 5 C -0.179 4.179 6 C -0.227 4.227 7 C 0.360 3.640 8 O -0.458 6.458 9 N -0.346 5.346 10 C 0.023 3.977 11 H 0.067 0.933 12 C -0.144 4.144 13 C -0.158 4.158 14 C 0.048 3.952 15 H 0.042 0.958 16 C -0.187 4.187 17 N -0.327 5.327 18 C -0.380 4.380 19 H 0.091 0.909 20 C -0.246 4.246 21 N -0.576 5.576 22 Si 0.781 3.219 23 H -0.189 1.189 24 H -0.230 1.230 25 H -0.213 1.213 26 C 0.054 3.946 27 C 0.167 3.833 28 O -0.298 6.298 29 N -0.244 5.244 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.200 0.800 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.069 0.931 37 H 0.248 0.752 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.054 0.946 46 H 0.019 0.981 47 H 0.063 0.937 48 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -16.428 -7.989 8.018 19.950 hybrid contribution 1.104 1.246 -0.557 1.755 sum -15.324 -6.743 7.461 18.329 Atomic orbital electron populations 1.20932 0.85045 1.04985 1.04976 1.21918 0.98822 0.86493 0.90181 1.22155 0.92312 1.01189 1.03690 1.20496 0.94915 0.93452 0.91190 1.20929 0.99709 0.93893 1.03332 1.20817 0.93405 0.95506 1.12984 1.18166 0.86914 0.74963 0.83907 1.90828 1.70558 1.50991 1.33383 1.45872 1.07216 1.73519 1.07976 1.21611 0.78195 0.98657 0.99189 0.93296 1.21650 0.96694 1.01197 0.94904 1.21961 0.94399 0.97078 1.02346 1.20813 0.93565 0.92260 0.88550 0.95820 1.21734 0.94866 1.00883 1.01231 1.44324 1.01128 1.65479 1.21817 1.19496 0.99640 1.07248 1.11650 0.90911 1.25722 0.99567 0.96507 1.02791 1.70136 1.28488 1.19848 1.39153 0.85426 0.78202 0.77854 0.80413 1.18910 1.22978 1.21341 1.20750 0.83351 0.91438 0.99031 1.19003 0.86781 0.84162 0.93367 1.84715 1.76863 1.32591 1.35676 1.67142 1.08358 1.31759 1.17172 0.87937 0.87648 0.90552 0.79954 0.90937 0.86752 0.93064 0.75191 0.89494 0.90647 0.88477 0.93084 0.93721 0.94284 0.90241 0.94607 0.98128 0.93739 0.71834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.16 71.24 0.72 -0.35 16 2 C 0.16 3.19 6.78 42.58 0.29 3.48 16 3 C -0.17 -3.27 9.41 22.32 0.21 -3.06 16 4 C 0.01 0.19 5.95 -19.42 -0.12 0.08 16 5 C -0.12 -3.32 9.69 71.24 0.69 -2.63 16 6 C -0.22 -6.89 5.66 -19.91 -0.11 -7.00 16 7 C 0.58 22.09 5.39 86.69 0.47 22.55 16 8 O -0.58 -29.35 16.77 -4.00 -0.07 -29.42 16 9 N -0.70 -22.84 5.08 -445.34 -2.26 -25.10 16 10 C 0.13 5.03 2.60 45.07 0.12 5.15 16 11 H 0.05 2.26 7.58 -2.39 -0.02 2.25 16 12 C -0.11 -3.06 5.35 30.62 0.16 -2.90 16 13 C -0.12 -3.63 5.37 30.67 0.16 -3.46 16 14 C 0.15 6.01 3.50 44.98 0.16 6.17 16 15 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 16 C -0.13 -4.64 7.95 71.98 0.57 -4.07 16 17 N -0.60 -30.36 2.99 -675.22 -2.02 -32.38 16 18 C -0.25 -14.00 8.61 84.03 0.72 -13.27 16 19 H 0.07 3.96 6.20 -2.91 -0.02 3.94 16 20 C -0.05 -2.95 4.96 84.86 0.42 -2.53 16 21 N -0.93 -56.78 11.14 21.65 0.24 -56.53 16 22 Si 0.95 47.66 29.58 68.60 2.03 49.69 16 23 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 25 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 26 C 0.18 8.97 4.87 86.36 0.42 9.39 16 27 C 0.35 10.01 7.77 85.13 0.66 10.67 16 28 O -0.49 -13.38 13.01 -87.19 -1.13 -14.52 16 29 N -0.52 -13.52 10.28 -296.07 -3.04 -16.56 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.10 0.60 8.07 -2.39 -0.02 0.58 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.11 2.18 8.10 -2.39 -0.02 2.16 16 36 H 0.05 1.73 7.19 -2.39 -0.02 1.71 16 37 H 0.41 10.15 8.59 -92.71 -0.80 9.35 16 38 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.04 1.66 7.40 -2.39 -0.02 1.64 16 43 H 0.04 1.54 7.66 -2.39 -0.02 1.52 16 44 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 47 H 0.04 2.67 6.06 -2.39 -0.01 2.65 16 48 H 0.42 6.78 9.06 -74.06 -0.67 6.11 16 Total: -1.00 -83.24 387.87 -1.18 -84.42 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -0.48 Total: 22.19 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 5.55 Total: 18.21 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -7.08 Total: -130.58 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -1.20 Total: -43.94 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -83.24 -1.18 -84.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071721423.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.491 kcal (2) G-P(sol) polarization free energy of solvation -83.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds