Wall clock time and date at job start Tue Mar 31 2020 18:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40193 * 120.37085 * 2 1 4 4 C 1.35346 * 119.95470 * 179.76524 * 3 2 1 5 5 N 1.35768 * 120.69494 * 0.51345 * 4 3 2 6 6 C 1.46500 * 119.62258 * 179.75569 * 5 4 3 7 7 C 1.50695 * 109.47255 * 269.73086 * 6 5 4 8 8 O 1.21281 * 120.00193 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99986 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00101 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.51979 * 34.92300 * 10 9 7 12 12 C 1.53033 * 109.49544 * 154.99953 * 10 9 7 13 13 C 1.53044 * 109.52767 * 181.31106 * 12 10 9 14 14 C 1.53192 * 109.31200 * 298.64300 * 13 12 10 15 15 H 1.08998 * 109.58961 * 294.70527 * 14 13 12 16 16 C 1.52996 * 109.58479 * 174.41933 * 14 13 12 17 17 N 1.46928 * 108.77474 * 54.63282 * 14 13 12 18 18 C 1.36934 * 120.62909 * 126.36521 * 17 14 13 19 19 H 1.07997 * 120.00636 * 330.17173 * 18 17 14 20 20 C 1.38814 * 119.99812 * 150.16543 * 18 17 14 21 21 N 1.31627 * 119.99987 * 344.50422 * 20 18 17 22 22 Si 1.86799 * 119.99883 * 164.49814 * 20 18 17 23 23 H 1.48489 * 109.47406 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46874 * 120.00550 * 22 20 18 25 25 H 1.48499 * 109.47144 * 240.00045 * 22 20 18 26 26 C 1.46925 * 118.73822 * 306.39254 * 17 14 13 27 27 C 1.34652 * 120.75204 * 359.48563 * 5 4 3 28 28 O 1.22069 * 119.98957 * 180.27673 * 27 5 4 29 29 C 1.36397 * 120.36571 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47218 * 269.97719 * 1 2 3 31 31 H 1.09004 * 109.47497 * 29.97534 * 1 2 3 32 32 H 1.08999 * 109.47789 * 149.97788 * 1 2 3 33 33 H 1.08003 * 120.02241 * 0.04651 * 3 2 1 34 34 H 1.07993 * 119.65701 * 180.27349 * 4 3 2 35 35 H 1.08996 * 109.46910 * 149.72745 * 6 5 4 36 36 H 1.09005 * 109.46829 * 29.73207 * 6 5 4 37 37 H 0.97005 * 119.99993 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.46203 * 61.29725 * 12 10 9 39 39 H 1.08999 * 109.46337 * 301.32619 * 12 10 9 40 40 H 1.09000 * 109.49267 * 58.59379 * 13 12 10 41 41 H 1.08997 * 109.50144 * 178.65719 * 13 12 10 42 42 H 1.08997 * 109.47069 * 59.99953 * 16 14 13 43 43 H 1.09009 * 109.47267 * 180.02562 * 16 14 13 44 44 H 1.09005 * 109.47385 * 299.99980 * 16 14 13 45 45 H 0.96996 * 119.99377 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58569 * 173.39631 * 26 17 14 47 47 H 1.09004 * 109.58548 * 293.67248 * 26 17 14 48 48 H 1.07999 * 120.35157 * 359.95551 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2095 0.0000 4 6 3.5692 1.1997 0.0048 5 7 4.2538 0.0273 -0.0008 6 6 5.7187 0.0441 -0.0008 7 6 6.2210 0.0499 -1.4216 8 8 5.4329 0.0405 -2.3435 9 7 7.5460 0.0646 -1.6679 10 6 8.0343 0.0697 -3.0491 11 1 7.3551 0.6502 -3.6735 12 6 9.4304 0.6950 -3.0950 13 6 9.9277 0.7305 -4.5419 14 6 10.0206 -0.7004 -5.0810 15 1 10.7851 -1.2492 -4.5311 16 6 10.3828 -0.6661 -6.5670 17 7 8.7177 -1.3569 -4.9066 18 6 8.0858 -1.9463 -5.9689 19 1 8.2359 -1.5628 -6.9672 20 6 7.2522 -3.0369 -5.7625 21 7 7.2983 -3.6943 -4.6230 22 14 6.0648 -3.5715 -7.1018 23 1 6.2076 -2.6749 -8.2767 24 1 6.3699 -4.9679 -7.5052 25 1 4.6734 -3.4975 -6.5882 26 6 8.1056 -1.3685 -3.5710 27 6 3.6016 -1.1508 -0.0009 28 8 4.2311 -2.1966 -0.0009 29 6 2.1965 -1.1769 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3635 -0.8897 -0.5142 33 1 1.6822 2.1486 0.0008 34 1 4.1103 2.1343 0.0093 35 1 6.0922 -0.8416 0.5130 36 1 6.0717 0.9382 0.5131 37 1 8.1763 0.0711 -0.9306 38 1 10.1148 0.1000 -2.4902 39 1 9.3867 1.7103 -2.7010 40 1 9.2306 1.3047 -5.1522 41 1 10.9119 1.1975 -4.5770 42 1 11.3436 -0.1676 -6.6954 43 1 10.4480 -1.6851 -6.9488 44 1 9.6146 -0.1213 -7.1159 45 1 6.7156 -4.4561 -4.4788 46 1 7.1002 -1.7848 -3.6334 47 1 8.7109 -1.9746 -2.8969 48 1 1.6682 -2.1188 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071860207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:17 Heat of formation + Delta-G solvation = -15.568690 kcal Electronic energy + Delta-G solvation = -29558.396533 eV Core-core repulsion = 25614.412263 eV Total energy + Delta-G solvation = -3943.984270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.42998 -39.34742 -37.60804 -36.94768 -35.27365 -34.39798 -32.78798 -31.18599 -30.27082 -29.82381 -29.32916 -27.15999 -25.71389 -24.78846 -23.71954 -22.29292 -21.79510 -20.80573 -20.12781 -19.26856 -17.58798 -17.47991 -17.24586 -16.37828 -16.01061 -15.52450 -15.23806 -14.94359 -14.58121 -14.25663 -14.08881 -13.88170 -13.77385 -13.60683 -13.34992 -13.28449 -12.90845 -12.72997 -12.40281 -12.37766 -12.11454 -11.87824 -11.75124 -11.68615 -11.42214 -11.10564 -10.85394 -10.67788 -10.53646 -10.36856 -10.22969 -10.11792 -9.92423 -9.85817 -9.70401 -9.43529 -9.31427 -8.57777 -8.36802 -7.93591 -6.56178 -5.68132 -3.13807 0.81774 1.90922 2.49976 2.85683 3.40984 3.47051 3.53855 3.56262 3.78456 4.41015 4.54037 4.58317 4.66008 4.84725 4.93640 5.03476 5.15791 5.31617 5.33990 5.36419 5.38336 5.46479 5.51905 5.59349 5.67214 5.68325 5.90274 5.96748 6.04467 6.09173 6.27732 6.30132 6.33037 6.39782 6.45471 6.49709 6.50502 6.63095 6.73284 6.90064 7.06663 7.09178 7.14792 7.33611 7.78746 7.80959 7.92873 8.14976 8.50977 8.56741 9.29788 9.94155 10.49347 11.39893 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012235 B = 0.003664 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.954147 B = 7640.422964 C = 9115.309683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.011 3.989 3 C -0.233 4.233 4 C 0.146 3.854 5 N -0.481 5.481 6 C 0.070 3.930 7 C 0.497 3.503 8 O -0.518 6.518 9 N -0.716 5.716 10 C 0.118 3.882 11 H 0.081 0.919 12 C -0.115 4.115 13 C -0.126 4.126 14 C 0.165 3.835 15 H 0.024 0.976 16 C -0.136 4.136 17 N -0.583 5.583 18 C -0.257 4.257 19 H 0.070 0.930 20 C 0.008 3.992 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.288 1.288 26 C 0.168 3.832 27 C 0.520 3.480 28 O -0.542 6.542 29 C -0.244 4.244 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.143 0.857 34 H 0.159 0.841 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.393 0.607 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.037 0.963 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.253 0.747 46 H 0.092 0.908 47 H 0.017 0.983 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.806 14.662 13.591 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.007 3.993 3 C -0.257 4.257 4 C 0.019 3.981 5 N -0.192 5.192 6 C -0.056 4.056 7 C 0.280 3.720 8 O -0.393 6.393 9 N -0.367 5.367 10 C 0.013 3.987 11 H 0.099 0.901 12 C -0.153 4.153 13 C -0.166 4.166 14 C 0.058 3.942 15 H 0.042 0.958 16 C -0.193 4.193 17 N -0.306 5.306 18 C -0.387 4.387 19 H 0.088 0.912 20 C -0.191 4.191 21 N -0.540 5.540 22 Si 0.728 3.272 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.041 3.959 27 C 0.322 3.678 28 O -0.423 6.423 29 C -0.266 4.266 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.161 0.839 34 H 0.176 0.824 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.226 0.774 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.111 0.889 47 H 0.036 0.964 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.031 13.790 12.919 19.554 hybrid contribution -0.311 -0.285 -0.254 0.493 sum -5.343 13.505 12.665 19.270 Atomic orbital electron populations 1.20905 0.90521 1.03541 1.02811 1.20159 0.96645 0.92698 0.89797 1.20457 0.92350 0.98773 1.14072 1.21837 0.93580 0.89466 0.93244 1.45036 1.07247 1.07239 1.59628 1.21819 0.79735 1.06873 0.97125 1.20513 0.83357 0.77464 0.90698 1.90796 1.55037 1.48021 1.45442 1.45999 1.06009 1.74947 1.09760 1.22008 0.94206 1.02056 0.80422 0.90065 1.21674 0.96225 0.99242 0.98190 1.22050 0.99656 0.99801 0.95081 1.20485 0.88774 0.90553 0.94386 0.95793 1.21797 0.98779 1.01979 0.96790 1.44012 1.16133 1.64298 1.06177 1.19139 1.23407 1.07788 0.88344 0.91222 1.25104 1.01235 0.95771 0.97009 1.69995 1.39339 1.20026 1.24603 0.86295 0.81492 0.77992 0.81425 1.20212 1.21729 1.21513 1.21052 1.00577 0.88969 0.85284 1.17102 0.89361 0.82531 0.78804 1.91007 1.69016 1.30134 1.52133 1.21934 0.92337 0.99542 1.12762 0.90310 0.90871 0.90856 0.83931 0.82371 0.85405 0.86500 0.77360 0.92215 0.93125 0.92120 0.92664 0.94380 0.91996 0.92809 0.93644 0.88939 0.96447 0.83635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.03 36.00 0.36 -0.57 16 2 C 0.01 0.12 5.89 -104.55 -0.62 -0.50 16 3 C -0.23 -2.25 9.71 -39.88 -0.39 -2.64 16 4 C 0.15 1.50 10.28 -16.84 -0.17 1.33 16 5 N -0.48 -6.70 2.07 -121.07 -0.25 -6.95 16 6 C 0.07 0.87 5.82 -5.20 -0.03 0.84 16 7 C 0.50 8.53 7.86 -10.99 -0.09 8.44 16 8 O -0.52 -11.75 16.09 5.56 0.09 -11.66 16 9 N -0.72 -11.25 5.08 -53.71 -0.27 -11.52 16 10 C 0.12 2.29 2.60 -67.83 -0.18 2.11 16 11 H 0.08 1.80 7.58 -51.93 -0.39 1.40 16 12 C -0.12 -1.81 5.36 -26.69 -0.14 -1.96 16 13 C -0.13 -2.13 5.37 -26.61 -0.14 -2.28 16 14 C 0.16 3.42 3.50 -67.60 -0.24 3.18 16 15 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 16 C -0.14 -2.59 7.95 37.16 0.30 -2.30 16 17 N -0.58 -14.86 2.99 -164.80 -0.49 -15.36 16 18 C -0.26 -7.25 8.58 -15.06 -0.13 -7.38 16 19 H 0.07 1.91 6.23 -52.49 -0.33 1.58 16 20 C 0.01 0.25 4.94 -17.43 -0.09 0.16 16 21 N -0.90 -27.88 11.23 55.49 0.62 -27.26 16 22 Si 0.90 23.30 29.58 -169.99 -5.03 18.27 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 26 C 0.17 4.20 4.86 -3.73 -0.02 4.18 16 27 C 0.52 9.09 7.40 -15.45 -0.11 8.97 16 28 O -0.54 -11.83 16.64 4.86 0.08 -11.75 16 29 C -0.24 -3.53 9.65 -39.38 -0.38 -3.91 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.16 1.01 8.03 -52.49 -0.42 0.59 16 35 H 0.13 1.61 7.39 -51.93 -0.38 1.23 16 36 H 0.12 0.79 8.01 -51.93 -0.42 0.37 16 37 H 0.39 4.56 8.61 -40.82 -0.35 4.21 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 1.28 7.67 -51.92 -0.40 0.88 16 44 H 0.05 1.05 7.40 -51.93 -0.38 0.66 16 45 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 46 H 0.09 2.79 6.15 -51.93 -0.32 2.47 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -39.38 387.60 -9.07 -48.45 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.60 Total: 4.26 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -2.06 Total: 7.68 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.39 Total: -61.09 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.17 Total: -23.41 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.03 Total: 18.27 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.38 -9.07 -48.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071860207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.877 kcal (2) G-P(sol) polarization free energy of solvation -39.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds