Wall clock time and date at job start Tue Mar 31 2020 18:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40193 * 120.37085 * 2 1 4 4 C 1.35346 * 119.95470 * 179.76524 * 3 2 1 5 5 N 1.35768 * 120.69494 * 0.51345 * 4 3 2 6 6 C 1.46500 * 119.62258 * 179.75569 * 5 4 3 7 7 C 1.50695 * 109.47255 * 269.73086 * 6 5 4 8 8 O 1.21281 * 120.00193 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99986 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00101 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.51979 * 34.92300 * 10 9 7 12 12 C 1.53033 * 109.49544 * 154.99953 * 10 9 7 13 13 C 1.53044 * 109.52767 * 181.31106 * 12 10 9 14 14 C 1.53192 * 109.31200 * 298.64300 * 13 12 10 15 15 H 1.08998 * 109.58961 * 294.70527 * 14 13 12 16 16 C 1.52996 * 109.58479 * 174.41933 * 14 13 12 17 17 N 1.46928 * 108.77474 * 54.63282 * 14 13 12 18 18 C 1.36934 * 120.62909 * 126.36521 * 17 14 13 19 19 H 1.07997 * 120.00636 * 330.17173 * 18 17 14 20 20 C 1.38814 * 119.99812 * 150.16543 * 18 17 14 21 21 N 1.31627 * 119.99987 * 344.50422 * 20 18 17 22 22 Si 1.86799 * 119.99883 * 164.49814 * 20 18 17 23 23 H 1.48489 * 109.47406 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46874 * 120.00550 * 22 20 18 25 25 H 1.48499 * 109.47144 * 240.00045 * 22 20 18 26 26 C 1.46925 * 118.73822 * 306.39254 * 17 14 13 27 27 C 1.34652 * 120.75204 * 359.48563 * 5 4 3 28 28 O 1.22069 * 119.98957 * 180.27673 * 27 5 4 29 29 C 1.36397 * 120.36571 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47218 * 269.97719 * 1 2 3 31 31 H 1.09004 * 109.47497 * 29.97534 * 1 2 3 32 32 H 1.08999 * 109.47789 * 149.97788 * 1 2 3 33 33 H 1.08003 * 120.02241 * 0.04651 * 3 2 1 34 34 H 1.07993 * 119.65701 * 180.27349 * 4 3 2 35 35 H 1.08996 * 109.46910 * 149.72745 * 6 5 4 36 36 H 1.09005 * 109.46829 * 29.73207 * 6 5 4 37 37 H 0.97005 * 119.99993 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.46203 * 61.29725 * 12 10 9 39 39 H 1.08999 * 109.46337 * 301.32619 * 12 10 9 40 40 H 1.09000 * 109.49267 * 58.59379 * 13 12 10 41 41 H 1.08997 * 109.50144 * 178.65719 * 13 12 10 42 42 H 1.08997 * 109.47069 * 59.99953 * 16 14 13 43 43 H 1.09009 * 109.47267 * 180.02562 * 16 14 13 44 44 H 1.09005 * 109.47385 * 299.99980 * 16 14 13 45 45 H 0.96996 * 119.99377 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58569 * 173.39631 * 26 17 14 47 47 H 1.09004 * 109.58548 * 293.67248 * 26 17 14 48 48 H 1.07999 * 120.35157 * 359.95551 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2095 0.0000 4 6 3.5692 1.1997 0.0048 5 7 4.2538 0.0273 -0.0008 6 6 5.7187 0.0441 -0.0008 7 6 6.2210 0.0499 -1.4216 8 8 5.4329 0.0405 -2.3435 9 7 7.5460 0.0646 -1.6679 10 6 8.0343 0.0697 -3.0491 11 1 7.3551 0.6502 -3.6735 12 6 9.4304 0.6950 -3.0950 13 6 9.9277 0.7305 -4.5419 14 6 10.0206 -0.7004 -5.0810 15 1 10.7851 -1.2492 -4.5311 16 6 10.3828 -0.6661 -6.5670 17 7 8.7177 -1.3569 -4.9066 18 6 8.0858 -1.9463 -5.9689 19 1 8.2359 -1.5628 -6.9672 20 6 7.2522 -3.0369 -5.7625 21 7 7.2983 -3.6943 -4.6230 22 14 6.0648 -3.5715 -7.1018 23 1 6.2076 -2.6749 -8.2767 24 1 6.3699 -4.9679 -7.5052 25 1 4.6734 -3.4975 -6.5882 26 6 8.1056 -1.3685 -3.5710 27 6 3.6016 -1.1508 -0.0009 28 8 4.2311 -2.1966 -0.0009 29 6 2.1965 -1.1769 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3635 -0.8897 -0.5142 33 1 1.6822 2.1486 0.0008 34 1 4.1103 2.1343 0.0093 35 1 6.0922 -0.8416 0.5130 36 1 6.0717 0.9382 0.5131 37 1 8.1763 0.0711 -0.9306 38 1 10.1148 0.1000 -2.4902 39 1 9.3867 1.7103 -2.7010 40 1 9.2306 1.3047 -5.1522 41 1 10.9119 1.1975 -4.5770 42 1 11.3436 -0.1676 -6.6954 43 1 10.4480 -1.6851 -6.9488 44 1 9.6146 -0.1213 -7.1159 45 1 6.7156 -4.4561 -4.4788 46 1 7.1002 -1.7848 -3.6334 47 1 8.7109 -1.9746 -2.8969 48 1 1.6682 -2.1188 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071860207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:17 Heat of formation + Delta-G solvation = -44.741789 kcal Electronic energy + Delta-G solvation = -29559.661574 eV Core-core repulsion = 25614.412263 eV Total energy + Delta-G solvation = -3945.249311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.52639 -40.79464 -39.24074 -38.13203 -36.34911 -35.97150 -34.69934 -32.58853 -31.81755 -31.22401 -30.39915 -28.28739 -27.50609 -26.44486 -24.66866 -24.07189 -22.93572 -22.20802 -21.60145 -20.95225 -18.72055 -18.55248 -18.50523 -18.28640 -17.29551 -17.04496 -16.68333 -16.31073 -16.13850 -15.71289 -15.43360 -15.18597 -15.09905 -15.04742 -14.82513 -14.49379 -14.18013 -14.16157 -13.67085 -13.52671 -13.35693 -13.14476 -13.02885 -12.88439 -12.79715 -12.75277 -12.58708 -12.48729 -12.31706 -12.15186 -12.00334 -11.69495 -11.46844 -11.22140 -11.15106 -11.09540 -10.60604 -10.56195 -10.13968 -8.99996 -8.67089 -7.90611 -5.37536 -0.13178 0.91039 1.32906 1.37928 1.44796 1.46397 1.53950 2.19146 2.44852 2.69227 3.26439 3.54039 3.63488 3.71220 3.77543 3.87534 3.97146 4.06675 4.08680 4.15513 4.25189 4.32232 4.36204 4.40202 4.58276 4.69308 4.76748 4.78953 4.81228 4.87475 4.88640 4.99462 5.06389 5.08982 5.17308 5.22275 5.28687 5.30980 5.43121 5.46533 5.53427 5.58099 5.65871 5.66699 5.76902 6.04936 6.35072 6.52380 6.97115 7.10270 7.24148 7.86043 8.34480 9.13832 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012235 B = 0.003664 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.954147 B = 7640.422964 C = 9115.309683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.034 3.966 3 C -0.232 4.232 4 C 0.142 3.858 5 N -0.483 5.483 6 C 0.077 3.923 7 C 0.490 3.510 8 O -0.581 6.581 9 N -0.702 5.702 10 C 0.135 3.865 11 H 0.053 0.947 12 C -0.105 4.105 13 C -0.118 4.118 14 C 0.151 3.849 15 H 0.020 0.980 16 C -0.129 4.129 17 N -0.603 5.603 18 C -0.248 4.248 19 H 0.078 0.922 20 C -0.057 4.057 21 N -0.935 5.935 22 Si 0.953 3.047 23 H -0.255 1.255 24 H -0.287 1.287 25 H -0.307 1.307 26 C 0.180 3.820 27 C 0.497 3.503 28 O -0.616 6.616 29 C -0.299 4.299 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.188 0.812 34 H 0.210 0.790 35 H 0.121 0.879 36 H 0.189 0.811 37 H 0.418 0.582 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.035 0.965 44 H 0.046 0.954 45 H 0.241 0.759 46 H 0.030 0.970 47 H -0.007 1.007 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.944 19.824 14.474 24.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.030 3.970 3 C -0.254 4.254 4 C 0.016 3.984 5 N -0.192 5.192 6 C -0.048 4.048 7 C 0.276 3.724 8 O -0.460 6.460 9 N -0.354 5.354 10 C 0.028 3.972 11 H 0.071 0.929 12 C -0.143 4.143 13 C -0.157 4.157 14 C 0.046 3.954 15 H 0.038 0.962 16 C -0.187 4.187 17 N -0.328 5.328 18 C -0.378 4.378 19 H 0.095 0.905 20 C -0.252 4.252 21 N -0.582 5.582 22 Si 0.782 3.218 23 H -0.179 1.179 24 H -0.213 1.213 25 H -0.235 1.235 26 C 0.052 3.948 27 C 0.303 3.697 28 O -0.504 6.504 29 C -0.321 4.321 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.206 0.794 34 H 0.227 0.773 35 H 0.139 0.861 36 H 0.206 0.794 37 H 0.255 0.745 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.011 0.989 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.121 19.040 13.824 23.887 hybrid contribution -0.583 -1.752 -0.525 1.920 sum -4.705 17.287 13.299 22.312 Atomic orbital electron populations 1.21039 0.87808 1.04441 1.04505 1.20671 0.98643 0.92028 0.85631 1.21092 0.92474 0.99699 1.12164 1.22804 0.94494 0.89629 0.91467 1.45087 1.08071 1.07488 1.58572 1.22037 0.79045 1.09931 0.93798 1.21430 0.83123 0.75636 0.92205 1.90768 1.56599 1.50781 1.47894 1.45788 1.06398 1.74012 1.09215 1.21473 0.96482 0.97536 0.81698 0.92917 1.21646 0.93083 1.01446 0.98100 1.21951 1.01964 0.96535 0.95249 1.20846 0.86038 0.92580 0.95912 0.96201 1.21737 1.00833 1.00838 0.95276 1.44332 1.18393 1.64538 1.05490 1.19521 1.22190 1.06597 0.89501 0.90453 1.25858 1.03613 0.96753 0.98969 1.70182 1.40465 1.20738 1.26782 0.85394 0.78405 0.78130 0.79833 1.17856 1.21335 1.23512 1.20723 0.96502 0.92202 0.85349 1.17603 0.90472 0.82857 0.78778 1.90941 1.70373 1.32626 1.56473 1.21873 0.91560 1.00922 1.17735 0.87953 0.88462 0.91447 0.79444 0.77339 0.86091 0.79379 0.74501 0.90891 0.88729 0.92816 0.88315 0.90046 0.94555 0.93512 0.95020 0.95100 0.98912 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 10.03 71.23 0.71 -0.88 16 2 C 0.03 0.72 5.89 -19.82 -0.12 0.61 16 3 C -0.23 -3.67 9.71 22.08 0.21 -3.45 16 4 C 0.14 2.47 10.28 83.42 0.86 3.32 16 5 N -0.48 -13.28 2.07 -655.07 -1.36 -14.63 16 6 C 0.08 1.79 5.82 85.63 0.50 2.29 16 7 C 0.49 16.93 7.86 87.65 0.69 17.62 16 8 O -0.58 -27.55 16.09 -3.03 -0.05 -27.60 16 9 N -0.70 -21.49 5.08 -442.22 -2.25 -23.73 16 10 C 0.13 5.18 2.60 45.06 0.12 5.30 16 11 H 0.05 2.36 7.58 -2.39 -0.02 2.35 16 12 C -0.10 -2.93 5.36 30.62 0.16 -2.76 16 13 C -0.12 -3.55 5.37 30.67 0.16 -3.39 16 14 C 0.15 6.09 3.50 44.97 0.16 6.25 16 15 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 16 C -0.13 -4.71 7.95 71.98 0.57 -4.14 16 17 N -0.60 -31.61 2.99 -675.30 -2.02 -33.63 16 18 C -0.25 -14.43 8.58 84.03 0.72 -13.71 16 19 H 0.08 4.31 6.23 -2.91 -0.02 4.29 16 20 C -0.06 -3.53 4.94 84.86 0.42 -3.11 16 21 N -0.94 -62.47 11.23 21.65 0.24 -62.23 16 22 Si 0.95 50.31 29.58 68.60 2.03 52.34 16 23 H -0.25 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 25 H -0.31 -16.98 7.11 99.48 0.71 -16.28 16 26 C 0.18 9.42 4.86 86.35 0.42 9.84 16 27 C 0.50 18.73 7.40 84.82 0.63 19.35 16 28 O -0.62 -29.98 16.64 -5.54 -0.09 -30.07 16 29 C -0.30 -9.35 9.65 22.40 0.22 -9.14 16 30 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.10 0.86 8.10 -2.39 -0.02 0.84 16 32 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 33 H 0.19 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.21 1.41 8.03 -2.91 -0.02 1.39 16 35 H 0.12 3.09 7.39 -2.39 -0.02 3.08 16 36 H 0.19 1.59 8.01 -2.38 -0.02 1.57 16 37 H 0.42 8.67 8.61 -92.70 -0.80 7.87 16 38 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.04 1.47 7.67 -2.38 -0.02 1.45 16 44 H 0.05 1.74 7.40 -2.38 -0.02 1.73 16 45 H 0.24 16.00 8.31 -92.71 -0.77 15.23 16 46 H 0.03 2.00 6.15 -2.39 -0.01 1.98 16 47 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 48 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -101.21 387.60 3.11 -98.10 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.16 Total: 17.47 kcal Atomic # 6 Polarization: 17.56 SS G_CDS: 6.44 Total: 24.00 kcal Atomic # 7 Polarization: -128.85 SS G_CDS: -5.38 Total: -134.23 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -0.14 Total: -57.67 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.03 Total: 52.34 kcal Total: -101.21 3.11 -98.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071860207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.353 kcal (2) G-P(sol) polarization free energy of solvation -101.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds