Wall clock time and date at job start Tue Mar 31 2020 18:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40200 * 120.36885 * 2 1 4 4 C 1.35352 * 119.94631 * 179.76841 * 3 2 1 5 5 N 1.35757 * 120.70125 * 0.53286 * 4 3 2 6 6 C 1.46511 * 119.62209 * 179.71698 * 5 4 3 7 7 C 1.50700 * 109.46861 * 269.72747 * 6 5 4 8 8 O 1.21280 * 120.00092 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99615 * 179.97438 * 7 6 5 10 10 C 1.46495 * 119.99632 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.52704 * 325.08153 * 10 9 7 12 12 C 1.53047 * 109.49754 * 204.99935 * 10 9 7 13 13 C 1.53041 * 109.52675 * 301.40978 * 12 10 9 14 14 C 1.53190 * 109.31193 * 298.64461 * 13 12 10 15 15 H 1.09008 * 109.58091 * 294.84240 * 14 13 12 16 16 C 1.52997 * 109.58475 * 174.42605 * 14 13 12 17 17 N 1.46917 * 108.78037 * 54.63045 * 14 13 12 18 18 C 1.36937 * 120.62831 * 126.36821 * 17 14 13 19 19 H 1.07997 * 120.00745 * 330.16593 * 18 17 14 20 20 C 1.38814 * 119.99887 * 150.16249 * 18 17 14 21 21 N 1.31627 * 119.99987 * 344.51489 * 20 18 17 22 22 Si 1.86799 * 119.99883 * 164.50881 * 20 18 17 23 23 H 1.48505 * 109.47234 * 60.00768 * 22 20 18 24 24 H 1.48508 * 109.47069 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47489 * 299.99968 * 22 20 18 26 26 C 1.46925 * 118.74225 * 306.39374 * 17 14 13 27 27 C 1.34657 * 120.75421 * 359.44067 * 5 4 3 28 28 O 1.22064 * 119.98583 * 180.27538 * 27 5 4 29 29 C 1.36407 * 120.36883 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47327 * 269.97614 * 1 2 3 31 31 H 1.09000 * 109.47240 * 29.97775 * 1 2 3 32 32 H 1.08994 * 109.47044 * 149.97775 * 1 2 3 33 33 H 1.07994 * 120.02412 * 0.02562 * 3 2 1 34 34 H 1.07999 * 119.64599 * 180.24605 * 4 3 2 35 35 H 1.08999 * 109.46593 * 149.72603 * 6 5 4 36 36 H 1.09000 * 109.46933 * 29.72727 * 6 5 4 37 37 H 0.97000 * 120.00022 * 0.02562 * 9 7 6 38 38 H 1.08999 * 109.45935 * 181.39285 * 12 10 9 39 39 H 1.09001 * 109.45832 * 61.42302 * 12 10 9 40 40 H 1.09007 * 109.49780 * 58.59104 * 13 12 10 41 41 H 1.09001 * 109.49600 * 178.68433 * 13 12 10 42 42 H 1.09001 * 109.47568 * 59.99404 * 16 14 13 43 43 H 1.09005 * 109.47046 * 179.97438 * 16 14 13 44 44 H 1.08999 * 109.46831 * 299.99281 * 16 14 13 45 45 H 0.96996 * 119.99377 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.58958 * 173.39372 * 26 17 14 47 47 H 1.09002 * 109.58854 * 293.68131 * 26 17 14 48 48 H 1.07997 * 120.34227 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0047 5 7 4.2538 0.0273 -0.0013 6 6 5.7188 0.0441 -0.0023 7 6 6.2201 0.0499 -1.4235 8 8 5.4314 0.0404 -2.3447 9 7 7.5450 0.0657 -1.6706 10 6 8.0323 0.0707 -3.0521 11 1 7.3662 -0.5257 -3.6756 12 6 9.4425 -0.5221 -3.0985 13 6 10.3710 0.2955 -2.1976 14 6 10.4351 1.7372 -2.7115 15 1 10.9034 1.7537 -3.6957 16 6 11.2490 2.5927 -1.7386 17 7 9.0679 2.2663 -2.8076 18 6 8.7300 3.4421 -2.1924 19 1 9.2377 3.7440 -1.2883 20 6 7.7348 4.2462 -2.7310 21 7 7.3298 4.0524 -3.9683 22 14 6.9703 5.6031 -1.6996 23 1 8.0241 6.5646 -1.2869 24 1 5.9390 6.3115 -2.4996 25 1 6.3395 5.0116 -0.4924 26 6 8.0699 1.5096 -3.5758 27 6 3.6017 -1.1508 -0.0009 28 8 4.2312 -2.1966 -0.0013 29 6 2.1966 -1.1769 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6822 2.1486 0.0004 34 1 4.1103 2.1343 0.0087 35 1 6.0926 -0.8416 0.5113 36 1 6.0722 0.9383 0.5113 37 1 8.1757 0.0729 -0.9337 38 1 9.8141 -0.4953 -4.1228 39 1 9.4141 -1.5543 -2.7494 40 1 9.9863 0.2896 -1.1777 41 1 11.3697 -0.1411 -2.2127 42 1 12.2593 2.1911 -1.6591 43 1 11.2938 3.6179 -2.1062 44 1 10.7742 2.5785 -0.7576 45 1 6.6342 4.6140 -4.3444 46 1 7.0890 1.9690 -3.4529 47 1 8.3439 1.5097 -4.6308 48 1 1.6683 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071860211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:26 Heat of formation + Delta-G solvation = -16.374583 kcal Electronic energy + Delta-G solvation = -30145.260680 eV Core-core repulsion = 26201.241464 eV Total energy + Delta-G solvation = -3944.019216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.36825 -39.37553 -37.60450 -36.91859 -35.17932 -34.13867 -32.78747 -31.18342 -30.20404 -29.92329 -29.27320 -27.03378 -25.98031 -24.93462 -23.64039 -22.22802 -21.85524 -20.81570 -20.35393 -18.79711 -17.55232 -17.44249 -17.24185 -16.28588 -15.96392 -15.48948 -15.14549 -14.92856 -14.52841 -14.16178 -14.05742 -14.02944 -13.85620 -13.55719 -13.34941 -13.15267 -12.95243 -12.74054 -12.54269 -12.33107 -12.13836 -11.82544 -11.68632 -11.59938 -11.26875 -11.20253 -11.01904 -10.92384 -10.78102 -10.44532 -10.38741 -10.05592 -10.01070 -9.85024 -9.58235 -9.50233 -9.27284 -8.51203 -8.42743 -7.88992 -6.64337 -5.80558 -3.25336 0.88302 1.96073 2.59381 3.03814 3.28356 3.35180 3.38279 3.54776 3.87860 4.42777 4.57733 4.64059 4.79539 4.97440 5.06931 5.17700 5.23261 5.26943 5.31439 5.38150 5.39178 5.42110 5.47514 5.54170 5.56855 5.69700 5.97946 5.98920 6.08203 6.10337 6.13065 6.30582 6.31472 6.38280 6.41583 6.49513 6.56657 6.57621 6.65087 6.85543 7.00996 7.08483 7.16022 7.33993 7.63201 7.77269 7.98647 8.15193 8.43751 8.67705 9.17877 9.82393 10.39986 11.27385 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.004264 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.219504 B = 6565.235816 C = 8093.907699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.017 3.983 3 C -0.236 4.236 4 C 0.154 3.846 5 N -0.476 5.476 6 C 0.069 3.931 7 C 0.503 3.497 8 O -0.534 6.534 9 N -0.694 5.694 10 C 0.120 3.880 11 H 0.075 0.925 12 C -0.119 4.119 13 C -0.130 4.130 14 C 0.165 3.835 15 H 0.025 0.975 16 C -0.135 4.135 17 N -0.583 5.583 18 C -0.253 4.253 19 H 0.067 0.933 20 C 0.006 3.994 21 N -0.897 5.897 22 Si 0.896 3.104 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.164 3.836 27 C 0.523 3.477 28 O -0.558 6.558 29 C -0.254 4.254 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.163 0.837 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.396 0.604 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.037 0.963 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.254 0.746 46 H 0.094 0.906 47 H 0.025 0.975 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 -6.299 9.629 12.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.013 3.987 3 C -0.259 4.259 4 C 0.027 3.973 5 N -0.186 5.186 6 C -0.057 4.057 7 C 0.286 3.714 8 O -0.411 6.411 9 N -0.345 5.345 10 C 0.014 3.986 11 H 0.093 0.907 12 C -0.157 4.157 13 C -0.169 4.169 14 C 0.058 3.942 15 H 0.042 0.958 16 C -0.192 4.192 17 N -0.306 5.306 18 C -0.382 4.382 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.541 5.541 22 Si 0.727 3.273 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.037 3.963 27 C 0.326 3.674 28 O -0.441 6.441 29 C -0.276 4.276 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.180 0.820 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.231 0.769 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.112 0.888 47 H 0.043 0.957 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.310 -6.873 8.836 12.390 hybrid contribution -0.088 0.974 0.670 1.186 sum -5.398 -5.898 9.506 12.422 Atomic orbital electron populations 1.20909 0.90549 1.03492 1.02841 1.20181 0.96604 0.92712 0.89164 1.20492 0.92343 0.98857 1.14228 1.22000 0.93674 0.89743 0.91904 1.45014 1.07470 1.07162 1.58936 1.21843 0.79376 1.06920 0.97540 1.20341 0.83381 0.77164 0.90472 1.90727 1.55209 1.49606 1.45538 1.45724 1.05698 1.73616 1.09496 1.21780 0.93734 1.00972 0.82065 0.90731 1.21692 0.95104 0.98032 1.00864 1.22065 0.97951 0.98028 0.98877 1.20471 0.87362 0.90567 0.95803 0.95782 1.21786 0.97145 1.00688 0.99614 1.44035 1.03140 1.22735 1.60686 1.19039 1.18622 0.96661 1.03920 0.91496 1.25091 1.01629 0.97491 0.95109 1.69987 1.31287 1.40646 1.12187 0.86481 0.79134 0.82199 0.79532 1.20938 1.21677 1.21306 1.21140 0.96156 0.86440 0.92554 1.17043 0.89298 0.82438 0.78654 1.90924 1.69248 1.30335 1.53630 1.21849 0.92323 0.99344 1.14060 0.90281 0.90788 0.90941 0.83824 0.81998 0.85785 0.86092 0.76935 0.91088 0.92937 0.92673 0.92825 0.94428 0.92094 0.92962 0.93578 0.88799 0.95666 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.03 36.00 0.36 -0.61 16 2 C 0.02 0.20 5.89 -104.55 -0.62 -0.41 16 3 C -0.24 -2.74 9.71 -39.87 -0.39 -3.13 16 4 C 0.15 2.03 10.28 -16.84 -0.17 1.86 16 5 N -0.48 -7.30 2.07 -121.06 -0.25 -7.55 16 6 C 0.07 0.99 5.82 -5.19 -0.03 0.96 16 7 C 0.50 9.29 7.86 -10.98 -0.09 9.21 16 8 O -0.53 -12.17 16.09 5.56 0.09 -12.08 16 9 N -0.69 -11.97 4.91 -53.70 -0.26 -12.23 16 10 C 0.12 2.27 2.81 -67.82 -0.19 2.08 16 11 H 0.07 1.50 7.58 -51.93 -0.39 1.11 16 12 C -0.12 -1.86 5.59 -26.69 -0.15 -2.01 16 13 C -0.13 -1.99 5.21 -26.61 -0.14 -2.13 16 14 C 0.16 3.12 3.50 -67.61 -0.24 2.88 16 15 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 16 C -0.13 -2.33 7.95 37.16 0.30 -2.03 16 17 N -0.58 -13.24 2.90 -164.80 -0.48 -13.72 16 18 C -0.25 -6.31 8.58 -15.06 -0.13 -6.44 16 19 H 0.07 1.62 6.23 -52.49 -0.33 1.30 16 20 C 0.01 0.16 4.94 -17.43 -0.09 0.08 16 21 N -0.90 -25.47 11.23 55.49 0.62 -24.85 16 22 Si 0.90 20.60 29.58 -169.99 -5.03 15.57 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.16 3.79 4.88 -3.72 -0.02 3.77 16 27 C 0.52 8.97 7.40 -15.45 -0.11 8.86 16 28 O -0.56 -11.30 16.64 4.86 0.08 -11.22 16 29 C -0.25 -3.61 9.65 -39.38 -0.38 -3.99 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.16 1.86 8.03 -52.49 -0.42 1.44 16 35 H 0.12 1.64 7.39 -51.93 -0.38 1.26 16 36 H 0.12 1.37 8.01 -51.93 -0.42 0.95 16 37 H 0.40 5.87 6.77 -40.82 -0.28 5.60 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 44 H 0.05 0.89 7.40 -51.93 -0.38 0.51 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.09 2.56 6.15 -51.93 -0.32 2.24 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -34.14 384.08 -8.95 -43.09 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -7.43 Total: 8.26 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -2.08 Total: 8.93 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.37 Total: -58.34 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.17 Total: -23.30 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.14 -8.95 -43.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071860211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.717 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds