Wall clock time and date at job start Tue Mar 31 2020 18:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40200 * 120.36885 * 2 1 4 4 C 1.35352 * 119.94631 * 179.76841 * 3 2 1 5 5 N 1.35757 * 120.70125 * 0.53286 * 4 3 2 6 6 C 1.46511 * 119.62209 * 179.71698 * 5 4 3 7 7 C 1.50700 * 109.46861 * 269.72747 * 6 5 4 8 8 O 1.21280 * 120.00092 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99615 * 179.97438 * 7 6 5 10 10 C 1.46495 * 119.99632 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.52704 * 325.08153 * 10 9 7 12 12 C 1.53047 * 109.49754 * 204.99935 * 10 9 7 13 13 C 1.53041 * 109.52675 * 301.40978 * 12 10 9 14 14 C 1.53190 * 109.31193 * 298.64461 * 13 12 10 15 15 H 1.09008 * 109.58091 * 294.84240 * 14 13 12 16 16 C 1.52997 * 109.58475 * 174.42605 * 14 13 12 17 17 N 1.46917 * 108.78037 * 54.63045 * 14 13 12 18 18 C 1.36937 * 120.62831 * 126.36821 * 17 14 13 19 19 H 1.07997 * 120.00745 * 330.16593 * 18 17 14 20 20 C 1.38814 * 119.99887 * 150.16249 * 18 17 14 21 21 N 1.31627 * 119.99987 * 344.51489 * 20 18 17 22 22 Si 1.86799 * 119.99883 * 164.50881 * 20 18 17 23 23 H 1.48505 * 109.47234 * 60.00768 * 22 20 18 24 24 H 1.48508 * 109.47069 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47489 * 299.99968 * 22 20 18 26 26 C 1.46925 * 118.74225 * 306.39374 * 17 14 13 27 27 C 1.34657 * 120.75421 * 359.44067 * 5 4 3 28 28 O 1.22064 * 119.98583 * 180.27538 * 27 5 4 29 29 C 1.36407 * 120.36883 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47327 * 269.97614 * 1 2 3 31 31 H 1.09000 * 109.47240 * 29.97775 * 1 2 3 32 32 H 1.08994 * 109.47044 * 149.97775 * 1 2 3 33 33 H 1.07994 * 120.02412 * 0.02562 * 3 2 1 34 34 H 1.07999 * 119.64599 * 180.24605 * 4 3 2 35 35 H 1.08999 * 109.46593 * 149.72603 * 6 5 4 36 36 H 1.09000 * 109.46933 * 29.72727 * 6 5 4 37 37 H 0.97000 * 120.00022 * 0.02562 * 9 7 6 38 38 H 1.08999 * 109.45935 * 181.39285 * 12 10 9 39 39 H 1.09001 * 109.45832 * 61.42302 * 12 10 9 40 40 H 1.09007 * 109.49780 * 58.59104 * 13 12 10 41 41 H 1.09001 * 109.49600 * 178.68433 * 13 12 10 42 42 H 1.09001 * 109.47568 * 59.99404 * 16 14 13 43 43 H 1.09005 * 109.47046 * 179.97438 * 16 14 13 44 44 H 1.08999 * 109.46831 * 299.99281 * 16 14 13 45 45 H 0.96996 * 119.99377 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.58958 * 173.39372 * 26 17 14 47 47 H 1.09002 * 109.58854 * 293.68131 * 26 17 14 48 48 H 1.07997 * 120.34227 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0047 5 7 4.2538 0.0273 -0.0013 6 6 5.7188 0.0441 -0.0023 7 6 6.2201 0.0499 -1.4235 8 8 5.4314 0.0404 -2.3447 9 7 7.5450 0.0657 -1.6706 10 6 8.0323 0.0707 -3.0521 11 1 7.3662 -0.5257 -3.6756 12 6 9.4425 -0.5221 -3.0985 13 6 10.3710 0.2955 -2.1976 14 6 10.4351 1.7372 -2.7115 15 1 10.9034 1.7537 -3.6957 16 6 11.2490 2.5927 -1.7386 17 7 9.0679 2.2663 -2.8076 18 6 8.7300 3.4421 -2.1924 19 1 9.2377 3.7440 -1.2883 20 6 7.7348 4.2462 -2.7310 21 7 7.3298 4.0524 -3.9683 22 14 6.9703 5.6031 -1.6996 23 1 8.0241 6.5646 -1.2869 24 1 5.9390 6.3115 -2.4996 25 1 6.3395 5.0116 -0.4924 26 6 8.0699 1.5096 -3.5758 27 6 3.6017 -1.1508 -0.0009 28 8 4.2312 -2.1966 -0.0013 29 6 2.1966 -1.1769 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6822 2.1486 0.0004 34 1 4.1103 2.1343 0.0087 35 1 6.0926 -0.8416 0.5113 36 1 6.0722 0.9383 0.5113 37 1 8.1757 0.0729 -0.9337 38 1 9.8141 -0.4953 -4.1228 39 1 9.4141 -1.5543 -2.7494 40 1 9.9863 0.2896 -1.1777 41 1 11.3697 -0.1411 -2.2127 42 1 12.2593 2.1911 -1.6591 43 1 11.2938 3.6179 -2.1062 44 1 10.7742 2.5785 -0.7576 45 1 6.6342 4.6140 -4.3444 46 1 7.0890 1.9690 -3.4529 47 1 8.3439 1.5097 -4.6308 48 1 1.6683 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071860211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:25 Heat of formation + Delta-G solvation = -38.504967 kcal Electronic energy + Delta-G solvation = -30146.220325 eV Core-core repulsion = 26201.241464 eV Total energy + Delta-G solvation = -3944.978862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.52602 -40.86169 -39.15413 -38.10785 -36.27487 -35.76457 -34.50606 -32.58255 -31.75781 -31.22366 -30.35282 -28.20632 -27.53629 -26.56902 -24.68659 -23.90646 -23.01857 -22.17884 -21.82858 -20.40512 -18.84552 -18.55160 -18.53228 -18.01922 -17.16202 -17.02363 -16.58192 -16.30773 -16.07071 -15.66978 -15.46733 -15.21135 -15.06352 -14.90538 -14.70667 -14.48534 -14.16103 -14.02175 -13.74920 -13.55777 -13.35398 -13.03713 -12.94482 -12.88089 -12.81727 -12.59212 -12.51574 -12.48412 -12.41363 -12.10198 -12.07865 -11.57898 -11.28331 -11.19663 -11.09260 -11.05314 -10.57153 -10.47075 -9.99969 -9.01650 -8.55118 -7.78311 -5.25215 -0.14803 0.88171 1.46237 1.47353 1.48690 1.55966 1.60510 2.26540 2.54991 2.70061 3.37002 3.61001 3.63470 3.67155 3.72931 3.85968 4.00516 4.07559 4.09040 4.13849 4.17280 4.30284 4.36833 4.48120 4.64411 4.72863 4.76218 4.81381 4.82983 4.88515 4.95950 5.03163 5.07964 5.08683 5.11188 5.21370 5.26799 5.31195 5.45204 5.57937 5.61071 5.61987 5.66319 5.72880 5.76434 6.04222 6.47022 6.57856 6.94509 7.21084 7.27519 7.94664 8.47936 9.27449 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.004264 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.219504 B = 6565.235816 C = 8093.907699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.032 3.968 3 C -0.228 4.228 4 C 0.133 3.867 5 N -0.480 5.480 6 C 0.074 3.926 7 C 0.495 3.505 8 O -0.585 6.585 9 N -0.684 5.684 10 C 0.130 3.870 11 H 0.054 0.946 12 C -0.111 4.111 13 C -0.118 4.118 14 C 0.153 3.847 15 H 0.009 0.991 16 C -0.127 4.127 17 N -0.593 5.593 18 C -0.241 4.241 19 H 0.080 0.920 20 C -0.055 4.055 21 N -0.940 5.940 22 Si 0.954 3.046 23 H -0.278 1.278 24 H -0.307 1.307 25 H -0.264 1.264 26 C 0.177 3.823 27 C 0.504 3.496 28 O -0.608 6.608 29 C -0.285 4.285 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.177 0.823 34 H 0.179 0.821 35 H 0.136 0.864 36 H 0.157 0.843 37 H 0.411 0.589 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.034 0.966 44 H 0.056 0.944 45 H 0.242 0.758 46 H 0.049 0.951 47 H -0.009 1.009 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.698 -6.142 12.520 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.028 3.972 3 C -0.251 4.251 4 C 0.007 3.993 5 N -0.189 5.189 6 C -0.051 4.051 7 C 0.281 3.719 8 O -0.466 6.466 9 N -0.335 5.335 10 C 0.023 3.977 11 H 0.072 0.928 12 C -0.149 4.149 13 C -0.156 4.156 14 C 0.048 3.952 15 H 0.026 0.974 16 C -0.184 4.184 17 N -0.317 5.317 18 C -0.371 4.371 19 H 0.098 0.902 20 C -0.250 4.250 21 N -0.587 5.587 22 Si 0.783 3.217 23 H -0.204 1.204 24 H -0.235 1.235 25 H -0.190 1.190 26 C 0.050 3.950 27 C 0.310 3.690 28 O -0.496 6.496 29 C -0.306 4.306 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.194 0.806 34 H 0.196 0.804 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.249 0.751 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.067 0.933 47 H 0.009 0.991 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.888 -6.704 11.793 14.419 hybrid contribution -0.190 0.990 -0.290 1.049 sum -5.078 -5.714 11.502 13.811 Atomic orbital electron populations 1.21027 0.87510 1.04571 1.04527 1.20626 0.98719 0.91738 0.86089 1.21013 0.92009 1.00198 1.11844 1.22486 0.94698 0.89584 0.92559 1.45045 1.07845 1.07410 1.58592 1.21947 0.79275 1.09156 0.94700 1.21130 0.83226 0.75770 0.91800 1.90701 1.56469 1.51832 1.47568 1.45609 1.05886 1.72847 1.09181 1.21442 0.95817 0.97708 0.82695 0.92759 1.21663 0.92517 0.99374 1.01391 1.21953 0.99789 0.94973 0.98928 1.20767 0.85212 0.93324 0.95929 0.97377 1.21708 0.98892 0.98954 0.98863 1.44243 1.04843 1.22387 1.60190 1.19425 1.17391 0.96557 1.03742 0.90238 1.25844 1.02997 1.00176 0.95968 1.70197 1.32154 1.42065 1.14278 0.85541 0.78003 0.79682 0.78507 1.20377 1.23459 1.18955 1.20758 0.94071 0.88933 0.91222 1.17534 0.90408 0.82387 0.78677 1.90870 1.70229 1.31836 1.56631 1.21936 0.91327 1.00844 1.16503 0.88020 0.89165 0.90439 0.80558 0.80362 0.84592 0.82535 0.75140 0.91197 0.90069 0.91304 0.89347 0.90849 0.94714 0.92462 0.94915 0.93260 0.99134 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 10.03 71.23 0.71 -0.85 16 2 C 0.03 0.70 5.89 -19.82 -0.12 0.58 16 3 C -0.23 -4.76 9.71 22.08 0.21 -4.55 16 4 C 0.13 3.31 10.28 83.42 0.86 4.17 16 5 N -0.48 -14.53 2.07 -655.05 -1.36 -15.89 16 6 C 0.07 2.06 5.82 85.63 0.50 2.56 16 7 C 0.50 18.41 7.86 87.66 0.69 19.10 16 8 O -0.59 -27.79 16.09 -3.03 -0.05 -27.84 16 9 N -0.68 -23.09 4.91 -442.19 -2.17 -25.26 16 10 C 0.13 4.96 2.81 45.06 0.13 5.08 16 11 H 0.05 2.29 7.58 -2.39 -0.02 2.28 16 12 C -0.11 -3.27 5.59 30.62 0.17 -3.10 16 13 C -0.12 -3.19 5.21 30.67 0.16 -3.03 16 14 C 0.15 5.55 3.50 44.97 0.16 5.71 16 15 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 16 C -0.13 -4.03 7.95 71.98 0.57 -3.45 16 17 N -0.59 -27.03 2.90 -675.29 -1.96 -28.99 16 18 C -0.24 -11.97 8.58 84.03 0.72 -11.25 16 19 H 0.08 3.72 6.23 -2.91 -0.02 3.70 16 20 C -0.06 -2.95 4.94 84.86 0.42 -2.53 16 21 N -0.94 -55.92 11.23 21.65 0.24 -55.68 16 22 Si 0.95 42.42 29.58 68.60 2.03 44.45 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.31 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 26 C 0.18 8.57 4.88 86.35 0.42 8.99 16 27 C 0.50 17.65 7.40 84.82 0.63 18.28 16 28 O -0.61 -25.54 16.64 -5.52 -0.09 -25.63 16 29 C -0.28 -8.08 9.65 22.40 0.22 -7.86 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.09 0.93 8.10 -2.39 -0.02 0.91 16 32 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 33 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.18 3.73 8.03 -2.91 -0.02 3.71 16 35 H 0.14 3.46 7.39 -2.39 -0.02 3.44 16 36 H 0.16 3.14 8.01 -2.39 -0.02 3.12 16 37 H 0.41 11.20 6.77 -92.71 -0.63 10.58 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.07 1.72 6.40 -2.38 -0.02 1.70 16 41 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.03 1.26 7.67 -2.38 -0.02 1.25 16 44 H 0.06 1.76 7.40 -2.39 -0.02 1.74 16 45 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 46 H 0.05 2.84 6.15 -2.39 -0.01 2.82 16 47 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 48 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -80.85 384.08 3.43 -77.42 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.34 Total: 29.57 kcal Atomic # 6 Polarization: 21.40 SS G_CDS: 6.45 Total: 27.85 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -5.25 Total: -125.82 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -0.14 Total: -53.47 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -80.85 3.43 -77.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071860211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.915 kcal (2) G-P(sol) polarization free energy of solvation -80.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds