Wall clock time and date at job start Tue Mar 31 2020 17:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37991 * 120.82792 * 2 1 4 4 C 1.39122 * 119.26725 * 180.27322 * 3 2 1 5 5 O 1.35506 * 119.52520 * 179.72308 * 4 3 2 6 6 N 1.32432 * 120.94866 * 359.70040 * 4 3 2 7 7 C 1.31629 * 121.80287 * 0.02562 * 6 4 3 8 8 C 1.50701 * 119.69050 * 179.97438 * 7 6 4 9 9 C 1.39569 * 120.62644 * 359.97438 * 7 6 4 10 10 C 1.47608 * 120.50301 * 179.97438 * 9 7 6 11 11 O 1.21581 * 120.00331 * 90.00429 * 10 9 7 12 12 N 1.34786 * 120.00114 * 270.00409 * 10 9 7 13 13 C 1.46493 * 120.00111 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.49939 * 35.06015 * 13 12 10 15 15 C 1.53035 * 109.52384 * 155.14532 * 13 12 10 16 16 C 1.53046 * 109.53710 * 181.32938 * 15 13 12 17 17 C 1.53185 * 109.31641 * 298.63699 * 16 15 13 18 18 H 1.09002 * 109.70107 * 294.78028 * 17 16 15 19 19 C 1.52998 * 109.58832 * 174.42050 * 17 16 15 20 20 N 1.46930 * 108.77566 * 54.63214 * 17 16 15 21 21 C 1.36932 * 120.62715 * 126.41303 * 20 17 16 22 22 H 1.08002 * 120.00789 * 330.15912 * 21 20 17 23 23 C 1.38822 * 119.99700 * 150.15467 * 21 20 17 24 24 N 1.31620 * 119.99894 * 344.49622 * 23 21 20 25 25 Si 1.86801 * 119.99668 * 164.49562 * 23 21 20 26 26 H 1.48502 * 109.47029 * 60.00488 * 25 23 21 27 27 H 1.48504 * 109.46699 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47482 * 300.00186 * 25 23 21 29 29 C 1.46918 * 118.73771 * 306.39365 * 20 17 16 30 30 H 1.08998 * 109.46967 * 270.27420 * 1 2 3 31 31 H 1.09009 * 109.46836 * 30.27029 * 1 2 3 32 32 H 1.09002 * 109.47465 * 150.26607 * 1 2 3 33 33 H 1.08005 * 120.36796 * 359.97438 * 3 2 1 34 34 H 0.96694 * 113.99857 * 269.98106 * 5 4 3 35 35 H 1.08996 * 109.47039 * 270.02341 * 8 7 6 36 36 H 1.08999 * 109.46958 * 30.01725 * 8 7 6 37 37 H 1.08999 * 109.47344 * 150.01640 * 8 7 6 38 38 H 0.96998 * 119.99368 * 0.02562 * 12 10 9 39 39 H 1.08999 * 109.46184 * 301.35006 * 15 13 12 40 40 H 1.09004 * 109.45801 * 61.32975 * 15 13 12 41 41 H 1.09004 * 109.49698 * 178.68196 * 16 15 13 42 42 H 1.08999 * 109.49428 * 58.58960 * 16 15 13 43 43 H 1.08994 * 109.47201 * 300.70898 * 19 17 16 44 44 H 1.09006 * 109.47041 * 60.71318 * 19 17 16 45 45 H 1.09001 * 109.47232 * 180.70868 * 19 17 16 46 46 H 0.96997 * 119.99522 * 179.97438 * 24 23 21 47 47 H 1.09002 * 109.58684 * 173.39321 * 29 20 17 48 48 H 1.08999 * 109.58806 * 293.82065 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1849 0.0000 4 6 3.6048 1.1471 -0.0058 5 8 4.3045 2.3075 -0.0115 6 7 4.2547 -0.0068 -0.0053 7 6 3.6204 -1.1602 0.0001 8 6 4.4079 -2.4451 -0.0003 9 6 2.2254 -1.2045 0.0061 10 6 1.5169 -2.4994 0.0116 11 8 1.2295 -3.0307 1.0667 12 7 1.1886 -3.0929 -1.1532 13 6 0.4859 -4.3783 -1.1478 14 1 -0.2028 -4.4129 -0.3036 15 6 -0.2971 -4.5387 -2.4528 16 6 -1.0578 -5.8666 -2.4334 17 6 -0.0577 -7.0218 -2.3245 18 1 0.5586 -7.0602 -3.2228 19 6 -0.8145 -8.3419 -2.1648 20 7 0.7967 -6.7986 -1.1502 21 6 0.9318 -7.7671 -0.1916 22 1 0.1211 -8.4545 -0.0002 23 6 2.1111 -7.8654 0.5342 24 7 3.1962 -7.2509 0.1131 25 14 2.1577 -8.8697 2.1086 26 1 1.8036 -10.2799 1.8068 27 1 3.5230 -8.8152 2.6902 28 1 1.1835 -8.3119 3.0807 29 6 1.5035 -5.5168 -1.0243 30 1 -0.3633 0.0049 1.0276 31 1 -0.3633 0.8876 -0.5181 32 1 -0.3634 -0.8924 -0.5097 33 1 1.6938 2.1314 -0.0004 34 1 4.5040 2.6421 -0.8965 35 1 4.5937 -2.7571 -1.0280 36 1 5.3585 -2.2887 0.5095 37 1 3.8410 -3.2188 0.5175 38 1 1.4182 -2.6692 -1.9950 39 1 -1.0050 -3.7161 -2.5550 40 1 0.3949 -4.5291 -3.2950 41 1 -1.6337 -5.9694 -3.3532 42 1 -1.7320 -5.8871 -1.5772 43 1 -1.4338 -8.2996 -1.2689 44 1 -1.4476 -8.5057 -3.0369 45 1 -0.1010 -9.1611 -2.0748 46 1 4.0200 -7.3193 0.6205 47 1 1.9945 -5.4642 -0.0525 48 1 2.2468 -5.4300 -1.8168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072095338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:06 Heat of formation + Delta-G solvation = -28.657494 kcal Electronic energy + Delta-G solvation = -29859.023407 eV Core-core repulsion = 25914.471564 eV Total energy + Delta-G solvation = -3944.551843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.99222 -39.32803 -37.79962 -37.09644 -34.44695 -34.40893 -32.83262 -31.97536 -30.53482 -29.84913 -28.23401 -27.79214 -25.99358 -25.01298 -23.65824 -22.28349 -21.43130 -20.97646 -20.16908 -19.34231 -18.57727 -17.50501 -17.30018 -16.46118 -15.96536 -15.64025 -15.18565 -14.42137 -14.22419 -14.08422 -13.84521 -13.80466 -13.68035 -13.43360 -13.38142 -13.24663 -12.90871 -12.69011 -12.42302 -12.26531 -12.21941 -11.93583 -11.89476 -11.72830 -11.47045 -11.13328 -10.90341 -10.69414 -10.56852 -10.42468 -10.28373 -10.04175 -9.94736 -9.71266 -9.66002 -9.48204 -9.33086 -8.89636 -8.60487 -8.41604 -6.61082 -5.74593 -3.19095 0.65718 0.98858 2.81931 3.13507 3.42514 3.49374 3.49986 3.50724 3.51757 4.33057 4.38961 4.53664 4.77019 4.87143 5.03306 5.18421 5.31469 5.34434 5.35546 5.38986 5.44682 5.51047 5.55623 5.64777 5.71799 5.75599 5.92192 5.94280 6.02238 6.07396 6.13563 6.24997 6.27647 6.37318 6.38231 6.43466 6.46844 6.60660 6.70684 6.87205 7.03535 7.11544 7.23211 7.28987 7.70288 7.73595 7.81207 7.87510 8.48059 8.52363 9.24601 9.88483 10.43997 11.33711 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.003653 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.919622 B = 7663.896323 C = 8863.269839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.009 3.991 3 C -0.200 4.200 4 C 0.326 3.674 5 O -0.482 6.482 6 N -0.507 5.507 7 C 0.199 3.801 8 C -0.115 4.115 9 C -0.186 4.186 10 C 0.568 3.432 11 O -0.518 6.518 12 N -0.711 5.711 13 C 0.115 3.885 14 H 0.083 0.917 15 C -0.116 4.116 16 C -0.126 4.126 17 C 0.165 3.835 18 H 0.025 0.975 19 C -0.137 4.137 20 N -0.583 5.583 21 C -0.255 4.255 22 H 0.069 0.931 23 C 0.009 3.991 24 N -0.900 5.900 25 Si 0.899 3.101 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.283 1.283 29 C 0.169 3.831 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.144 0.856 34 H 0.401 0.599 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.393 0.607 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.037 0.963 45 H 0.061 0.939 46 H 0.254 0.746 47 H 0.093 0.907 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 16.207 -7.301 18.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.001 3.999 3 C -0.221 4.221 4 C 0.148 3.852 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.061 3.939 8 C -0.172 4.172 9 C -0.191 4.191 10 C 0.351 3.649 11 O -0.393 6.393 12 N -0.361 5.361 13 C 0.010 3.990 14 H 0.101 0.899 15 C -0.154 4.154 16 C -0.166 4.166 17 C 0.058 3.942 18 H 0.042 0.958 19 C -0.194 4.194 20 N -0.306 5.306 21 C -0.385 4.385 22 H 0.087 0.913 23 C -0.190 4.190 24 N -0.543 5.543 25 Si 0.729 3.271 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.209 1.209 29 C 0.042 3.958 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.161 0.839 34 H 0.259 0.741 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.226 0.774 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.112 0.888 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -3.427 15.791 -5.849 17.185 hybrid contribution -0.435 0.058 -0.039 0.441 sum -3.862 15.850 -5.889 17.344 Atomic orbital electron populations 1.20923 0.89409 1.03708 1.03838 1.20195 0.96886 0.90898 0.91961 1.21811 0.93698 0.99194 1.07395 1.19247 0.87007 0.85058 0.93931 1.84735 1.76097 1.34193 1.33866 1.67011 1.41874 0.97816 1.16011 1.21183 0.89313 0.93153 0.90257 1.20926 1.00629 0.91474 1.04209 1.20863 0.94940 0.94671 1.08660 1.17775 0.78859 0.83570 0.84657 1.90879 1.53159 1.64462 1.30829 1.46141 1.59335 1.23145 1.07509 1.22072 0.96130 0.82857 0.97975 0.89888 1.21677 0.98635 0.97870 0.97215 1.22046 0.98620 0.95212 1.00693 1.20488 0.90866 0.92145 0.90664 0.95752 1.21802 0.99614 0.98279 0.99708 1.44001 1.53552 1.12508 1.20547 1.19081 0.97120 1.10511 1.11739 0.91326 1.25065 0.94867 0.99146 0.99940 1.69983 0.99698 1.46439 1.38211 0.86428 0.76790 0.79891 0.84001 1.20943 1.21647 1.20922 1.21062 0.90629 0.81651 1.02436 0.89616 0.90417 0.90502 0.83853 0.74149 0.89297 0.89802 0.89146 0.77385 0.93104 0.92234 0.92676 0.92057 0.92819 0.94381 0.91958 0.93650 0.88843 0.96412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.68 36.01 0.35 -0.85 16 2 C 0.01 0.10 5.95 -103.96 -0.62 -0.52 16 3 C -0.20 -2.14 9.73 -39.34 -0.38 -2.52 16 4 C 0.33 4.01 7.74 -16.96 -0.13 3.88 16 5 O -0.48 -4.83 13.55 -18.21 -0.25 -5.08 16 6 N -0.51 -7.40 10.28 -9.20 -0.09 -7.50 16 7 C 0.20 2.99 6.82 -82.18 -0.56 2.43 16 8 C -0.12 -1.73 9.78 36.01 0.35 -1.37 16 9 C -0.19 -2.74 5.65 -104.82 -0.59 -3.33 16 10 C 0.57 9.75 4.29 -12.43 -0.05 9.70 16 11 O -0.52 -11.37 16.77 5.29 0.09 -11.28 16 12 N -0.71 -10.99 5.08 -54.71 -0.28 -11.27 16 13 C 0.11 2.10 2.60 -67.81 -0.18 1.93 16 14 H 0.08 1.75 7.58 -51.93 -0.39 1.35 16 15 C -0.12 -1.76 5.36 -26.69 -0.14 -1.90 16 16 C -0.13 -2.04 5.37 -26.61 -0.14 -2.19 16 17 C 0.16 3.27 3.50 -67.60 -0.24 3.03 16 18 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 19 C -0.14 -2.50 7.95 37.16 0.30 -2.21 16 20 N -0.58 -14.08 2.99 -164.78 -0.49 -14.57 16 21 C -0.26 -6.84 8.57 -15.06 -0.13 -6.97 16 22 H 0.07 1.80 6.24 -52.49 -0.33 1.47 16 23 C 0.01 0.25 4.94 -17.43 -0.09 0.16 16 24 N -0.90 -25.91 11.23 55.49 0.62 -25.28 16 25 Si 0.90 22.15 29.58 -169.99 -5.03 17.12 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 28 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 29 C 0.17 3.91 4.86 -3.71 -0.02 3.90 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.54 8.10 -51.92 -0.42 0.12 16 32 H 0.08 0.82 7.19 -51.93 -0.37 0.44 16 33 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 34 H 0.40 1.83 9.06 45.56 0.41 2.24 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.60 7.06 -51.93 -0.37 1.23 16 38 H 0.39 4.88 8.59 -40.82 -0.35 4.53 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 1.00 7.44 -51.93 -0.39 0.61 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 1.24 7.63 -51.93 -0.40 0.85 16 46 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.09 2.56 6.15 -51.93 -0.32 2.24 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 386.39 15.07 5.82 5.82 Total: -1.00 -33.69 386.39 -8.58 -42.27 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.71 Total: 6.58 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -2.27 Total: 3.18 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -0.24 Total: -58.62 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.16 Total: -16.37 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.69 -8.58 -42.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072095338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.616 kcal (2) G-P(sol) polarization free energy of solvation -33.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds