Wall clock time and date at job start Tue Mar 31 2020 17:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37992 * 120.81955 * 2 1 4 4 C 1.39126 * 119.26460 * 179.97438 * 3 2 1 5 5 O 1.35499 * 119.52569 * 180.02562 * 4 3 2 6 6 N 1.32431 * 120.94982 * 0.02562 * 4 3 2 7 7 C 1.31637 * 121.79925 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.68821 * 179.97438 * 7 6 4 9 9 C 1.39566 * 120.62775 * 0.25271 * 7 6 4 10 10 C 1.47610 * 120.50148 * 179.72894 * 9 7 6 11 11 O 1.21578 * 120.00386 * 89.99435 * 10 9 7 12 12 N 1.34780 * 119.99919 * 269.99944 * 10 9 7 13 13 C 1.46497 * 120.00544 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.49344 * 324.93724 * 13 12 10 15 15 C 1.53037 * 109.50334 * 204.83741 * 13 12 10 16 16 C 1.53034 * 109.53953 * 178.68337 * 15 13 12 17 17 C 1.53189 * 109.31514 * 61.36412 * 16 15 13 18 18 H 1.09001 * 109.58031 * 65.15304 * 17 16 15 19 19 C 1.52997 * 109.58697 * 185.57633 * 17 16 15 20 20 N 1.46925 * 108.77615 * 305.36530 * 17 16 15 21 21 C 1.36929 * 120.63125 * 233.62620 * 20 17 16 22 22 H 1.08006 * 120.00117 * 41.16254 * 21 20 17 23 23 C 1.38817 * 120.00122 * 221.16223 * 21 20 17 24 24 N 1.31619 * 119.99848 * 214.83856 * 23 21 20 25 25 Si 1.86796 * 119.99919 * 34.83748 * 23 21 20 26 26 H 1.48508 * 109.46976 * 84.62592 * 25 23 21 27 27 H 1.48499 * 109.47121 * 204.62658 * 25 23 21 28 28 H 1.48501 * 109.47221 * 324.63070 * 25 23 21 29 29 C 1.46930 * 118.73504 * 53.60878 * 20 17 16 30 30 H 1.09000 * 109.47225 * 89.99807 * 1 2 3 31 31 H 1.09000 * 109.46672 * 209.99611 * 1 2 3 32 32 H 1.08998 * 109.47162 * 329.99733 * 1 2 3 33 33 H 1.08004 * 120.36853 * 0.02562 * 3 2 1 34 34 H 0.96703 * 114.00312 * 269.98403 * 5 4 3 35 35 H 1.08997 * 109.46994 * 89.99704 * 8 7 6 36 36 H 1.09004 * 109.46895 * 329.99956 * 8 7 6 37 37 H 1.09002 * 109.47305 * 209.99881 * 8 7 6 38 38 H 0.97006 * 119.99653 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.45835 * 298.70626 * 15 13 12 40 40 H 1.09003 * 109.45779 * 58.65964 * 15 13 12 41 41 H 1.09001 * 109.49815 * 301.40910 * 16 15 13 42 42 H 1.09000 * 109.52503 * 181.33753 * 16 15 13 43 43 H 1.09004 * 109.46864 * 179.29444 * 19 17 16 44 44 H 1.08997 * 109.47116 * 299.29134 * 19 17 16 45 45 H 1.09001 * 109.47089 * 59.29104 * 19 17 16 46 46 H 0.96998 * 119.99960 * 180.02562 * 24 23 21 47 47 H 1.09005 * 109.57967 * 186.60462 * 29 20 17 48 48 H 1.08999 * 109.70479 * 66.24695 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 0.0005 5 8 4.3043 2.3078 0.0011 6 7 4.2548 -0.0065 0.0005 7 6 3.6205 -1.1600 -0.0005 8 6 4.4081 -2.4449 -0.0010 9 6 2.2256 -1.2044 -0.0069 10 6 1.5172 -2.4994 -0.0140 11 8 1.2208 -3.0360 1.0359 12 7 1.1991 -3.0870 -1.1845 13 6 0.4965 -4.3725 -1.1917 14 1 0.8364 -4.9776 -0.3511 15 6 0.7889 -5.1072 -2.5020 16 6 0.0819 -6.4645 -2.4965 17 6 -1.4308 -6.2474 -2.3911 18 1 -1.7904 -5.7407 -3.2868 19 6 -2.1339 -7.5984 -2.2453 20 7 -1.7084 -5.4177 -1.2108 21 6 -2.5993 -5.8352 -0.2584 22 1 -2.6111 -6.8691 0.0538 23 6 -3.4874 -4.9296 0.3058 24 7 -3.8314 -5.0464 1.5708 25 14 -4.1942 -3.5454 -0.7305 26 1 -5.3805 -4.0401 -1.4744 27 1 -4.5969 -2.4218 0.1529 28 1 -3.1670 -3.0741 -1.6938 29 6 -1.0116 -4.1317 -1.0716 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6935 2.1314 0.0004 34 1 4.5079 2.6447 -0.8822 35 1 4.5976 -2.7552 1.0265 36 1 5.3570 -2.2892 -0.5144 37 1 3.8394 -3.2194 -0.5155 38 1 1.4360 -2.6591 -2.0222 39 1 0.4266 -4.5124 -3.3405 40 1 1.8639 -5.2580 -2.6016 41 1 0.4257 -7.0503 -1.6440 42 1 0.3096 -6.9975 -3.4196 43 1 -3.2090 -7.4409 -2.1579 44 1 -1.9267 -8.2122 -3.1218 45 1 -1.7670 -8.1044 -1.3524 46 1 -4.4522 -4.4139 1.9650 47 1 -1.2359 -3.6982 -0.0969 48 1 -1.3366 -3.4505 -1.8580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072095341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:09 Heat of formation + Delta-G solvation = -25.755107 kcal Electronic energy + Delta-G solvation = -29870.041026 eV Core-core repulsion = 25925.615040 eV Total energy + Delta-G solvation = -3944.425986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.09784 -39.48505 -37.96938 -37.21024 -34.57429 -34.48740 -32.81745 -32.13447 -30.75473 -30.54643 -28.23831 -27.97224 -26.17604 -24.94906 -23.76367 -22.52238 -21.53629 -21.05142 -20.38661 -19.43552 -18.66705 -17.66818 -17.37390 -16.55941 -16.11711 -15.83443 -15.15591 -14.65357 -14.43754 -14.31525 -14.08247 -13.85984 -13.76026 -13.48098 -13.47022 -13.28868 -13.08353 -12.83620 -12.52000 -12.42782 -12.28189 -12.10374 -12.08295 -11.84029 -11.80100 -11.48745 -11.21147 -10.79526 -10.65054 -10.52681 -10.30420 -10.16984 -9.95812 -9.79874 -9.73411 -9.58182 -9.43916 -9.00862 -8.83495 -8.31903 -6.71365 -6.06783 -3.37579 0.55830 0.91132 2.68365 3.01182 3.35060 3.38879 3.40304 3.48861 3.52202 4.22381 4.32998 4.56881 4.62900 4.80640 4.95983 5.00379 5.13576 5.16866 5.24121 5.24659 5.36685 5.41240 5.42713 5.44314 5.49338 5.70674 5.74791 5.78263 5.91534 5.94280 6.02018 6.06783 6.14387 6.20756 6.26311 6.29219 6.37513 6.50027 6.57680 6.60945 6.74619 6.93640 7.04345 7.13157 7.15587 7.60366 7.66014 8.03684 8.35276 8.44805 9.00285 9.73061 10.20408 11.08535 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014704 B = 0.003760 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.763345 B = 7445.531004 C = 8576.228272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.015 3.985 3 C -0.196 4.196 4 C 0.327 3.673 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.192 3.808 8 C -0.111 4.111 9 C -0.187 4.187 10 C 0.566 3.434 11 O -0.512 6.512 12 N -0.716 5.716 13 C 0.122 3.878 14 H 0.092 0.908 15 C -0.116 4.116 16 C -0.126 4.126 17 C 0.162 3.838 18 H 0.026 0.974 19 C -0.134 4.134 20 N -0.590 5.590 21 C -0.277 4.277 22 H 0.078 0.922 23 C 0.053 3.947 24 N -0.874 5.874 25 Si 0.841 3.159 26 H -0.288 1.288 27 H -0.297 1.297 28 H -0.262 1.262 29 C 0.140 3.860 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.401 0.599 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.394 0.606 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.056 0.944 46 H 0.263 0.737 47 H 0.071 0.929 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.169 9.593 -10.350 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.007 3.993 3 C -0.218 4.218 4 C 0.149 3.851 5 O -0.288 6.288 6 N -0.228 5.228 7 C 0.054 3.946 8 C -0.168 4.168 9 C -0.192 4.192 10 C 0.349 3.651 11 O -0.387 6.387 12 N -0.367 5.367 13 C 0.017 3.983 14 H 0.110 0.890 15 C -0.154 4.154 16 C -0.166 4.166 17 C 0.056 3.944 18 H 0.044 0.956 19 C -0.192 4.192 20 N -0.314 5.314 21 C -0.405 4.405 22 H 0.095 0.905 23 C -0.150 4.150 24 N -0.512 5.512 25 Si 0.668 3.332 26 H -0.215 1.215 27 H -0.224 1.224 28 H -0.187 1.187 29 C 0.013 3.987 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.259 0.741 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.228 0.772 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 14.686 9.235 -8.794 19.450 hybrid contribution -1.224 1.444 -1.342 2.320 sum 13.462 10.679 -10.136 19.950 Atomic orbital electron populations 1.21008 0.89048 1.04826 1.03762 1.20263 0.97112 0.90828 0.91063 1.21878 0.93683 0.99377 1.06818 1.19218 0.87015 0.84998 0.93872 1.84742 1.76007 1.34108 1.33947 1.66967 1.41840 0.97814 1.16202 1.21024 0.89165 0.93110 0.91324 1.20854 1.00193 0.91534 1.04205 1.20824 0.94815 0.94696 1.08877 1.17843 0.78802 0.83864 0.84600 1.90914 1.52787 1.63713 1.31255 1.46205 1.59154 1.23693 1.07637 1.21916 0.94872 0.82750 0.98799 0.89022 1.21679 0.99622 0.97454 0.96664 1.22022 0.97869 0.95527 1.01148 1.20620 0.91562 0.92259 0.89952 0.95615 1.21761 1.01731 0.95792 0.99875 1.44264 1.46377 1.19351 1.21392 1.18558 1.11151 0.97103 1.13686 0.90505 1.25581 0.97086 0.97129 0.95189 1.70095 1.33571 1.37440 1.10115 0.87394 0.80845 0.82710 0.82262 1.21522 1.22398 1.18716 1.21615 0.88034 0.88776 1.00234 0.89606 0.89766 0.90111 0.83665 0.74097 0.89365 0.89775 0.90187 0.77228 0.92227 0.92538 0.91652 0.92371 0.91802 0.94335 0.92465 0.92710 0.91101 0.95906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.68 36.01 0.35 -1.22 16 2 C 0.02 0.19 5.95 -103.96 -0.62 -0.43 16 3 C -0.20 -2.11 9.72 -39.34 -0.38 -2.50 16 4 C 0.33 3.80 7.74 -16.96 -0.13 3.67 16 5 O -0.48 -4.53 13.55 -18.19 -0.25 -4.78 16 6 N -0.51 -6.66 10.28 -9.20 -0.09 -6.75 16 7 C 0.19 2.50 6.82 -82.18 -0.56 1.94 16 8 C -0.11 -1.21 9.79 36.01 0.35 -0.86 16 9 C -0.19 -2.58 5.65 -104.82 -0.59 -3.18 16 10 C 0.57 9.13 4.29 -12.43 -0.05 9.07 16 11 O -0.51 -10.80 16.77 5.30 0.09 -10.71 16 12 N -0.72 -10.17 5.08 -54.71 -0.28 -10.44 16 13 C 0.12 2.07 2.60 -67.81 -0.18 1.90 16 14 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 15 C -0.12 -1.61 5.35 -26.69 -0.14 -1.76 16 16 C -0.13 -1.92 5.37 -26.62 -0.14 -2.07 16 17 C 0.16 3.03 3.50 -67.60 -0.24 2.79 16 18 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 19 C -0.13 -2.41 8.07 37.16 0.30 -2.11 16 20 N -0.59 -13.46 2.47 -164.77 -0.41 -13.86 16 21 C -0.28 -7.49 8.42 -15.06 -0.13 -7.62 16 22 H 0.08 2.22 6.83 -52.48 -0.36 1.86 16 23 C 0.05 1.51 4.82 -17.43 -0.08 1.43 16 24 N -0.87 -26.41 13.97 55.49 0.78 -25.64 16 25 Si 0.84 21.16 27.39 -169.99 -4.66 16.50 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.30 -7.60 7.11 56.52 0.40 -7.19 16 28 H -0.26 -6.25 5.24 56.52 0.30 -5.95 16 29 C 0.14 2.98 4.17 -3.71 -0.02 2.96 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.29 7.20 -51.93 -0.37 0.91 16 32 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.40 1.59 9.06 45.56 0.41 2.00 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.86 7.06 -51.93 -0.37 0.49 16 38 H 0.39 4.35 8.59 -40.82 -0.35 4.00 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 1.26 7.68 -51.93 -0.40 0.86 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 1.08 7.42 -51.93 -0.39 0.70 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.07 1.76 7.02 -51.93 -0.36 1.40 16 48 H 0.02 0.48 6.71 -51.93 -0.35 0.13 16 LS Contribution 383.78 15.07 5.78 5.78 Total: -1.00 -34.50 383.78 -8.11 -42.61 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.82 Total: 5.25 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -2.26 Total: 2.04 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.00 Total: -56.69 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.16 Total: -15.48 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.66 Total: 16.50 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.50 -8.11 -42.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072095341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.853 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds