Wall clock time and date at job start Tue Mar 31 2020 17:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37992 * 120.81955 * 2 1 4 4 C 1.39126 * 119.26460 * 179.97438 * 3 2 1 5 5 O 1.35499 * 119.52569 * 180.02562 * 4 3 2 6 6 N 1.32431 * 120.94982 * 0.02562 * 4 3 2 7 7 C 1.31637 * 121.79925 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.68821 * 179.97438 * 7 6 4 9 9 C 1.39566 * 120.62775 * 0.25271 * 7 6 4 10 10 C 1.47610 * 120.50148 * 179.72894 * 9 7 6 11 11 O 1.21578 * 120.00386 * 89.99435 * 10 9 7 12 12 N 1.34780 * 119.99919 * 269.99944 * 10 9 7 13 13 C 1.46497 * 120.00544 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.49344 * 324.93724 * 13 12 10 15 15 C 1.53037 * 109.50334 * 204.83741 * 13 12 10 16 16 C 1.53034 * 109.53953 * 178.68337 * 15 13 12 17 17 C 1.53189 * 109.31514 * 61.36412 * 16 15 13 18 18 H 1.09001 * 109.58031 * 65.15304 * 17 16 15 19 19 C 1.52997 * 109.58697 * 185.57633 * 17 16 15 20 20 N 1.46925 * 108.77615 * 305.36530 * 17 16 15 21 21 C 1.36929 * 120.63125 * 233.62620 * 20 17 16 22 22 H 1.08006 * 120.00117 * 41.16254 * 21 20 17 23 23 C 1.38817 * 120.00122 * 221.16223 * 21 20 17 24 24 N 1.31619 * 119.99848 * 214.83856 * 23 21 20 25 25 Si 1.86796 * 119.99919 * 34.83748 * 23 21 20 26 26 H 1.48508 * 109.46976 * 84.62592 * 25 23 21 27 27 H 1.48499 * 109.47121 * 204.62658 * 25 23 21 28 28 H 1.48501 * 109.47221 * 324.63070 * 25 23 21 29 29 C 1.46930 * 118.73504 * 53.60878 * 20 17 16 30 30 H 1.09000 * 109.47225 * 89.99807 * 1 2 3 31 31 H 1.09000 * 109.46672 * 209.99611 * 1 2 3 32 32 H 1.08998 * 109.47162 * 329.99733 * 1 2 3 33 33 H 1.08004 * 120.36853 * 0.02562 * 3 2 1 34 34 H 0.96703 * 114.00312 * 269.98403 * 5 4 3 35 35 H 1.08997 * 109.46994 * 89.99704 * 8 7 6 36 36 H 1.09004 * 109.46895 * 329.99956 * 8 7 6 37 37 H 1.09002 * 109.47305 * 209.99881 * 8 7 6 38 38 H 0.97006 * 119.99653 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.45835 * 298.70626 * 15 13 12 40 40 H 1.09003 * 109.45779 * 58.65964 * 15 13 12 41 41 H 1.09001 * 109.49815 * 301.40910 * 16 15 13 42 42 H 1.09000 * 109.52503 * 181.33753 * 16 15 13 43 43 H 1.09004 * 109.46864 * 179.29444 * 19 17 16 44 44 H 1.08997 * 109.47116 * 299.29134 * 19 17 16 45 45 H 1.09001 * 109.47089 * 59.29104 * 19 17 16 46 46 H 0.96998 * 119.99960 * 180.02562 * 24 23 21 47 47 H 1.09005 * 109.57967 * 186.60462 * 29 20 17 48 48 H 1.08999 * 109.70479 * 66.24695 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 0.0005 5 8 4.3043 2.3078 0.0011 6 7 4.2548 -0.0065 0.0005 7 6 3.6205 -1.1600 -0.0005 8 6 4.4081 -2.4449 -0.0010 9 6 2.2256 -1.2044 -0.0069 10 6 1.5172 -2.4994 -0.0140 11 8 1.2208 -3.0360 1.0359 12 7 1.1991 -3.0870 -1.1845 13 6 0.4965 -4.3725 -1.1917 14 1 0.8364 -4.9776 -0.3511 15 6 0.7889 -5.1072 -2.5020 16 6 0.0819 -6.4645 -2.4965 17 6 -1.4308 -6.2474 -2.3911 18 1 -1.7904 -5.7407 -3.2868 19 6 -2.1339 -7.5984 -2.2453 20 7 -1.7084 -5.4177 -1.2108 21 6 -2.5993 -5.8352 -0.2584 22 1 -2.6111 -6.8691 0.0538 23 6 -3.4874 -4.9296 0.3058 24 7 -3.8314 -5.0464 1.5708 25 14 -4.1942 -3.5454 -0.7305 26 1 -5.3805 -4.0401 -1.4744 27 1 -4.5969 -2.4218 0.1529 28 1 -3.1670 -3.0741 -1.6938 29 6 -1.0116 -4.1317 -1.0716 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6935 2.1314 0.0004 34 1 4.5079 2.6447 -0.8822 35 1 4.5976 -2.7552 1.0265 36 1 5.3570 -2.2892 -0.5144 37 1 3.8394 -3.2194 -0.5155 38 1 1.4360 -2.6591 -2.0222 39 1 0.4266 -4.5124 -3.3405 40 1 1.8639 -5.2580 -2.6016 41 1 0.4257 -7.0503 -1.6440 42 1 0.3096 -6.9975 -3.4196 43 1 -3.2090 -7.4409 -2.1579 44 1 -1.9267 -8.2122 -3.1218 45 1 -1.7670 -8.1044 -1.3524 46 1 -4.4522 -4.4139 1.9650 47 1 -1.2359 -3.6982 -0.0969 48 1 -1.3366 -3.4505 -1.8580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072095341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:08 Heat of formation + Delta-G solvation = -53.902231 kcal Electronic energy + Delta-G solvation = -29871.261577 eV Core-core repulsion = 25925.615040 eV Total energy + Delta-G solvation = -3945.646537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.11027 -40.72656 -39.35714 -38.15537 -36.07866 -35.42533 -34.63304 -33.19110 -32.54452 -31.87127 -29.16613 -28.95293 -27.74974 -26.60652 -24.87989 -24.09220 -22.48483 -22.33777 -21.73193 -21.01386 -19.49107 -18.88196 -18.45647 -18.25536 -17.54822 -16.90674 -16.60815 -16.33979 -15.76559 -15.53449 -15.27423 -15.19765 -14.98221 -14.82926 -14.57646 -14.44423 -14.37305 -14.24155 -13.90192 -13.70602 -13.37632 -13.36088 -13.21438 -12.98201 -12.95900 -12.73548 -12.65697 -12.60991 -12.45861 -12.09533 -11.82451 -11.65712 -11.50851 -11.24912 -11.16886 -10.69155 -10.58078 -10.52924 -10.16634 -9.93504 -8.60460 -8.25659 -5.51391 -0.36653 -0.00894 1.33086 1.39574 1.41275 1.47875 1.97133 2.33456 2.46824 2.52662 2.95504 3.34451 3.37925 3.45382 3.64456 3.88719 3.93446 4.07932 4.13640 4.17947 4.21870 4.33699 4.37408 4.48387 4.49744 4.52241 4.57759 4.68148 4.72463 4.80575 4.88112 4.91261 4.99959 5.02585 5.04082 5.06530 5.09806 5.15821 5.21803 5.29444 5.36543 5.43758 5.56200 5.68636 5.94484 6.27806 6.45465 6.53414 6.76492 7.02760 7.15310 7.68348 8.16632 8.94601 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014704 B = 0.003760 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.763345 B = 7445.531004 C = 8576.228272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.010 3.990 3 C -0.187 4.187 4 C 0.332 3.668 5 O -0.484 6.484 6 N -0.524 5.524 7 C 0.190 3.810 8 C -0.109 4.109 9 C -0.206 4.206 10 C 0.573 3.427 11 O -0.572 6.572 12 N -0.697 5.697 13 C 0.134 3.866 14 H 0.055 0.945 15 C -0.107 4.107 16 C -0.119 4.119 17 C 0.151 3.849 18 H 0.043 0.957 19 C -0.129 4.129 20 N -0.604 5.604 21 C -0.259 4.259 22 H 0.043 0.957 23 C -0.006 4.006 24 N -0.930 5.930 25 Si 0.904 3.096 26 H -0.288 1.288 27 H -0.305 1.305 28 H -0.239 1.239 29 C 0.144 3.856 30 H 0.102 0.898 31 H 0.043 0.957 32 H 0.102 0.898 33 H 0.176 0.824 34 H 0.426 0.574 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.415 0.585 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.099 0.901 43 H 0.037 0.963 44 H 0.080 0.920 45 H 0.035 0.965 46 H 0.260 0.740 47 H 0.022 0.978 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.307 11.616 -14.264 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.003 3.997 3 C -0.207 4.207 4 C 0.153 3.847 5 O -0.296 6.296 6 N -0.245 5.245 7 C 0.052 3.948 8 C -0.167 4.167 9 C -0.212 4.212 10 C 0.358 3.642 11 O -0.451 6.451 12 N -0.349 5.349 13 C 0.028 3.972 14 H 0.074 0.926 15 C -0.145 4.145 16 C -0.159 4.159 17 C 0.047 3.953 18 H 0.061 0.939 19 C -0.187 4.187 20 N -0.330 5.330 21 C -0.389 4.389 22 H 0.060 0.940 23 C -0.204 4.204 24 N -0.572 5.572 25 Si 0.730 3.270 26 H -0.215 1.215 27 H -0.232 1.232 28 H -0.163 1.163 29 C 0.017 3.983 30 H 0.121 0.879 31 H 0.062 0.938 32 H 0.120 0.880 33 H 0.193 0.807 34 H 0.288 0.712 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.253 0.747 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.066 0.934 42 H 0.118 0.882 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.041 0.959 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.872 11.292 -12.825 24.014 hybrid contribution -1.788 0.822 -0.118 1.971 sum 15.084 12.114 -12.943 23.276 Atomic orbital electron populations 1.21004 0.89048 1.03840 1.04558 1.20371 0.97223 0.91042 0.91105 1.22081 0.93402 0.99776 1.05489 1.19433 0.87525 0.85200 0.92495 1.84695 1.75675 1.33005 1.36186 1.67034 1.42167 0.98231 1.17065 1.21196 0.88850 0.93842 0.90948 1.20887 1.00938 0.90784 1.04051 1.20654 0.95275 0.93744 1.11494 1.18193 0.77766 0.84232 0.83964 1.90888 1.55257 1.65484 1.33455 1.45951 1.57958 1.22720 1.08254 1.21502 0.92023 0.83746 0.99934 0.92628 1.21666 1.01715 0.96316 0.94771 1.21947 0.94840 0.96599 1.02489 1.20945 0.94375 0.91593 0.88358 0.93932 1.21712 0.99853 0.96257 1.00843 1.44420 1.45941 1.20266 1.22352 1.18463 1.11127 0.95603 1.13701 0.93953 1.26152 0.98123 1.00282 0.95853 1.70210 1.35548 1.39525 1.11921 0.86378 0.80316 0.79605 0.80683 1.21515 1.23241 1.16254 1.21498 0.90886 0.88010 0.97872 0.87924 0.93803 0.87968 0.80677 0.71172 0.90052 0.87810 0.90206 0.74744 0.89763 0.89195 0.93414 0.88238 0.94411 0.90089 0.94605 0.93100 0.95934 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.68 71.24 0.69 -2.27 16 2 C 0.01 0.24 5.95 -19.43 -0.12 0.13 16 3 C -0.19 -3.47 9.72 22.42 0.22 -3.25 16 4 C 0.33 6.78 7.74 84.82 0.66 7.44 16 5 O -0.48 -7.51 13.55 -88.01 -1.19 -8.70 16 6 N -0.52 -12.67 10.28 -295.89 -3.04 -15.71 16 7 C 0.19 4.71 6.82 42.91 0.29 5.00 16 8 C -0.11 -2.28 9.79 71.24 0.70 -1.58 16 9 C -0.21 -5.58 5.65 -20.00 -0.11 -5.69 16 10 C 0.57 18.78 4.29 86.72 0.37 19.16 16 11 O -0.57 -25.61 16.77 -3.96 -0.07 -25.68 16 12 N -0.70 -19.04 5.08 -445.26 -2.26 -21.30 16 13 C 0.13 4.47 2.60 45.07 0.12 4.59 16 14 H 0.06 2.29 7.58 -2.38 -0.02 2.27 16 15 C -0.11 -2.55 5.35 30.62 0.16 -2.39 16 16 C -0.12 -3.24 5.37 30.67 0.16 -3.08 16 17 C 0.15 5.37 3.50 44.97 0.16 5.53 16 18 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 19 C -0.13 -4.54 8.07 71.98 0.58 -3.96 16 20 N -0.60 -27.82 2.47 -675.22 -1.67 -29.49 16 21 C -0.26 -14.68 8.42 84.04 0.71 -13.98 16 22 H 0.04 2.64 6.83 -2.91 -0.02 2.62 16 23 C -0.01 -0.33 4.82 84.86 0.41 0.08 16 24 N -0.93 -59.71 13.97 21.65 0.30 -59.41 16 25 Si 0.90 45.19 27.39 68.60 1.88 47.07 16 26 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 27 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 28 H -0.24 -10.82 5.24 99.48 0.52 -10.30 16 29 C 0.14 6.12 4.17 86.36 0.36 6.48 16 30 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.38 7.20 -2.39 -0.02 1.36 16 32 H 0.10 1.87 8.10 -2.39 -0.02 1.85 16 33 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 34 H 0.43 1.77 9.06 -74.05 -0.67 1.10 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.08 1.63 7.06 -2.39 -0.02 1.61 16 38 H 0.42 7.97 8.59 -92.70 -0.80 7.18 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.04 1.49 7.68 -2.38 -0.02 1.47 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.03 1.38 7.42 -2.39 -0.02 1.36 16 46 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 47 H 0.02 1.16 7.02 -2.38 -0.02 1.14 16 48 H 0.04 1.39 6.71 -2.39 -0.02 1.38 16 Total: -1.00 -82.08 383.78 -1.35 -83.43 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -0.66 Total: 17.58 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 5.36 Total: 12.21 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -6.67 Total: -125.91 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.26 Total: -34.38 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -82.08 -1.35 -83.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072095341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.530 kcal (2) G-P(sol) polarization free energy of solvation -82.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds