Wall clock time and date at job start Tue Mar 31 2020 17:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37997 * 120.81820 * 2 1 4 4 C 1.39127 * 119.26497 * 179.97438 * 3 2 1 5 5 O 1.35500 * 119.52436 * 179.97438 * 4 3 2 6 6 N 1.32429 * 120.94937 * 359.97438 * 4 3 2 7 7 C 1.31643 * 121.79914 * 359.70133 * 6 4 3 8 8 C 1.50709 * 119.68714 * 180.29040 * 7 6 4 9 9 C 1.39558 * 120.62289 * 0.58569 * 7 6 4 10 10 C 1.47618 * 120.49656 * 179.70546 * 9 7 6 11 11 O 1.21583 * 119.99785 * 269.71861 * 10 9 7 12 12 N 1.34770 * 120.00486 * 89.72249 * 10 9 7 13 13 C 1.46498 * 120.00538 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.52677 * 325.08561 * 13 12 10 15 15 C 1.53041 * 109.50290 * 204.99758 * 13 12 10 16 16 C 1.53036 * 109.54013 * 301.41986 * 15 13 12 17 17 C 1.53194 * 109.30816 * 298.63279 * 16 15 13 18 18 H 1.09007 * 109.58421 * 294.84403 * 17 16 15 19 19 C 1.53005 * 109.58419 * 174.56610 * 17 16 15 20 20 N 1.46923 * 108.89957 * 54.70637 * 17 16 15 21 21 C 1.36939 * 120.63124 * 126.32064 * 20 17 16 22 22 H 1.07999 * 119.99866 * 330.16207 * 21 20 17 23 23 C 1.38814 * 119.99847 * 150.16138 * 21 20 17 24 24 N 1.31612 * 120.00198 * 161.75469 * 23 21 20 25 25 Si 1.86806 * 119.99864 * 341.75062 * 23 21 20 26 26 H 1.48500 * 109.47035 * 91.94399 * 25 23 21 27 27 H 1.48496 * 109.46873 * 211.94648 * 25 23 21 28 28 H 1.48507 * 109.47127 * 331.94887 * 25 23 21 29 29 C 1.47207 * 118.55060 * 306.46451 * 20 17 16 30 30 H 1.09004 * 109.46781 * 270.02256 * 1 2 3 31 31 H 1.09001 * 109.47345 * 30.02385 * 1 2 3 32 32 H 1.09001 * 109.46892 * 150.02647 * 1 2 3 33 33 H 1.08003 * 120.37227 * 359.95696 * 3 2 1 34 34 H 0.96700 * 113.99790 * 90.00367 * 5 4 3 35 35 H 1.08994 * 109.46998 * 270.29030 * 8 7 6 36 36 H 1.08995 * 109.46991 * 30.29003 * 8 7 6 37 37 H 1.08996 * 109.46816 * 150.29145 * 8 7 6 38 38 H 0.97001 * 119.99527 * 359.97438 * 12 10 9 39 39 H 1.08997 * 109.45983 * 181.39162 * 15 13 12 40 40 H 1.09001 * 109.45432 * 61.43925 * 15 13 12 41 41 H 1.08994 * 109.49776 * 178.68290 * 16 15 13 42 42 H 1.08997 * 109.49920 * 58.57869 * 16 15 13 43 43 H 1.08997 * 109.47082 * 60.28246 * 19 17 16 44 44 H 1.08996 * 109.47220 * 180.27831 * 19 17 16 45 45 H 1.08998 * 109.46918 * 300.28201 * 19 17 16 46 46 H 0.97001 * 119.99787 * 180.02562 * 24 23 21 47 47 H 1.09003 * 109.55734 * 293.69254 * 29 20 17 48 48 H 1.09003 * 109.64455 * 173.39588 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1474 0.0005 5 8 4.3042 2.3079 0.0000 6 7 4.2548 -0.0064 0.0016 7 6 3.6205 -1.1599 0.0079 8 6 4.4081 -2.4448 0.0154 9 6 2.2256 -1.2042 0.0016 10 6 1.5172 -2.4994 0.0023 11 8 1.2259 -3.0334 -1.0504 12 7 1.1934 -3.0898 1.1696 13 6 0.4899 -4.3749 1.1703 14 1 -0.2006 -4.4126 0.3278 15 6 -0.2904 -4.5295 2.4777 16 6 0.6742 -4.4438 3.6627 17 6 1.6930 -5.5841 3.5699 18 1 1.1826 -6.5404 3.6847 19 6 2.7411 -5.4265 4.6735 20 7 2.3491 -5.5305 2.2564 21 6 3.7145 -5.4933 2.1595 22 1 4.2992 -5.0350 2.9434 23 6 4.3471 -6.0447 1.0537 24 7 5.5880 -5.7099 0.7705 25 14 3.4370 -7.2620 -0.0324 26 1 2.7686 -6.5333 -1.1404 27 1 4.4016 -8.2410 -0.5946 28 1 2.4172 -7.9791 0.7745 29 6 1.5066 -5.5144 1.0494 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6935 2.1315 -0.0007 34 1 4.5069 2.6453 0.8833 35 1 4.6027 -2.7576 -1.0103 36 1 5.3544 -2.2878 0.5331 37 1 3.8369 -3.2181 0.5290 38 1 1.4262 -2.6639 2.0095 39 1 -0.7936 -5.4963 2.4881 40 1 -1.0315 -3.7339 2.5545 41 1 0.1148 -4.5306 4.5941 42 1 1.1959 -3.4871 3.6388 43 1 2.2518 -5.4616 5.6469 44 1 3.4677 -6.2358 4.6028 45 1 3.2502 -4.4698 4.5571 46 1 6.0299 -6.0949 -0.0024 47 1 0.9811 -6.4650 0.9585 48 1 2.1301 -5.3560 0.1694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072095342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:12 Heat of formation + Delta-G solvation = -21.151667 kcal Electronic energy + Delta-G solvation = -31015.514836 eV Core-core repulsion = 27071.288470 eV Total energy + Delta-G solvation = -3944.226366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.82808 -39.46461 -37.93190 -36.96727 -34.28310 -34.22017 -32.80257 -31.80948 -30.72620 -30.51521 -28.08791 -27.44976 -26.38366 -24.91053 -23.67521 -22.69561 -21.20076 -21.04595 -20.39217 -18.97665 -18.41945 -17.65810 -17.11078 -16.57167 -15.74146 -15.62132 -15.26251 -14.74370 -14.27469 -14.19341 -13.96963 -13.67535 -13.55631 -13.40621 -13.22036 -13.06469 -12.99031 -12.75378 -12.49995 -12.14291 -12.00734 -11.95227 -11.79867 -11.56940 -11.52754 -11.31800 -11.28635 -11.01407 -10.57089 -10.45985 -10.32446 -10.00144 -9.86068 -9.70254 -9.50926 -9.39612 -9.22312 -8.76489 -8.67948 -8.44157 -6.90521 -5.92960 -3.31644 0.86190 1.19482 2.89903 3.30913 3.40308 3.51780 3.53063 3.63571 3.74306 4.53170 4.56015 4.60046 4.84583 4.91718 5.04116 5.12073 5.19408 5.24001 5.26456 5.37488 5.41053 5.44988 5.62781 5.71372 5.73791 5.86920 5.89590 5.94620 6.07529 6.12392 6.19572 6.20644 6.27250 6.31607 6.34575 6.42776 6.45233 6.46269 6.50836 6.66796 6.91020 6.94268 7.01466 7.04958 7.41550 7.85791 7.98248 8.00931 8.35391 8.55680 8.94159 9.74031 10.12049 11.21108 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.005046 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.434305 B = 5548.049007 C = 6302.021554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.006 3.994 3 C -0.206 4.206 4 C 0.326 3.674 5 O -0.483 6.483 6 N -0.506 5.506 7 C 0.209 3.791 8 C -0.109 4.109 9 C -0.191 4.191 10 C 0.576 3.424 11 O -0.537 6.537 12 N -0.693 5.693 13 C 0.127 3.873 14 H 0.081 0.919 15 C -0.118 4.118 16 C -0.132 4.132 17 C 0.170 3.830 18 H 0.029 0.971 19 C -0.135 4.135 20 N -0.598 5.598 21 C -0.259 4.259 22 H 0.091 0.909 23 C 0.034 3.966 24 N -0.901 5.901 25 Si 0.869 3.131 26 H -0.285 1.285 27 H -0.305 1.305 28 H -0.272 1.272 29 C 0.113 3.887 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.400 0.600 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.400 0.600 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.262 0.738 47 H 0.032 0.968 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.233 11.568 5.104 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.002 4.002 3 C -0.227 4.227 4 C 0.148 3.852 5 O -0.290 6.290 6 N -0.226 5.226 7 C 0.071 3.929 8 C -0.166 4.166 9 C -0.196 4.196 10 C 0.360 3.640 11 O -0.414 6.414 12 N -0.343 5.343 13 C 0.021 3.979 14 H 0.099 0.901 15 C -0.156 4.156 16 C -0.171 4.171 17 C 0.063 3.937 18 H 0.047 0.953 19 C -0.193 4.193 20 N -0.323 5.323 21 C -0.387 4.387 22 H 0.108 0.892 23 C -0.166 4.166 24 N -0.543 5.543 25 Si 0.700 3.300 26 H -0.213 1.213 27 H -0.234 1.234 28 H -0.197 1.197 29 C -0.013 4.013 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.258 0.742 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.235 0.765 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.050 0.950 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.408 11.151 3.663 15.687 hybrid contribution -0.986 -0.328 0.029 1.040 sum -11.394 10.823 3.692 16.143 Atomic orbital electron populations 1.20898 0.89682 1.03963 1.03203 1.20140 0.96662 0.90988 0.92445 1.21751 0.93730 0.99003 1.08247 1.19301 0.86991 0.85181 0.93762 1.84716 1.76146 1.34270 1.33899 1.67103 1.41832 0.97791 1.15886 1.21552 0.89357 0.93510 0.88463 1.20962 1.01189 0.90636 1.03822 1.20777 0.95087 0.94304 1.09447 1.17749 0.78198 0.83713 0.84319 1.90797 1.54240 1.65008 1.31393 1.45867 1.58440 1.22077 1.07914 1.21525 0.94276 0.84320 0.97827 0.90098 1.21688 0.97446 1.01943 0.94546 1.22068 0.97674 1.00654 0.96743 1.20467 0.92213 0.94399 0.86579 0.95334 1.21796 0.99047 1.02853 0.95594 1.44442 1.02792 1.86224 0.98805 1.18813 0.79901 1.32366 1.07623 0.89178 1.25262 0.95047 0.98257 0.98052 1.69780 1.12269 1.44225 1.28046 0.87154 0.79011 0.82855 0.81013 1.21254 1.23352 1.19741 1.21823 0.93280 0.94332 0.91910 0.90011 0.90523 0.90455 0.84098 0.74224 0.90307 0.89591 0.87440 0.76486 0.90914 0.92404 0.92382 0.92292 0.94305 0.91734 0.92549 0.92848 0.94992 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.69 36.01 0.35 -0.91 16 2 C 0.01 0.08 5.95 -103.96 -0.62 -0.54 16 3 C -0.21 -2.56 9.72 -39.34 -0.38 -2.94 16 4 C 0.33 4.73 7.74 -16.96 -0.13 4.60 16 5 O -0.48 -5.80 13.55 -18.19 -0.25 -6.05 16 6 N -0.51 -8.89 10.28 -9.20 -0.09 -8.98 16 7 C 0.21 3.83 6.82 -82.18 -0.56 3.27 16 8 C -0.11 -2.23 9.78 36.01 0.35 -1.88 16 9 C -0.19 -3.21 5.65 -104.83 -0.59 -3.80 16 10 C 0.58 10.50 4.29 -12.44 -0.05 10.44 16 11 O -0.54 -11.70 16.77 5.29 0.09 -11.61 16 12 N -0.69 -11.29 4.91 -54.71 -0.27 -11.56 16 13 C 0.13 2.10 2.81 -67.81 -0.19 1.91 16 14 H 0.08 1.36 7.58 -51.93 -0.39 0.96 16 15 C -0.12 -1.56 5.59 -26.69 -0.15 -1.71 16 16 C -0.13 -1.80 5.21 -26.61 -0.14 -1.94 16 17 C 0.17 2.93 3.49 -67.60 -0.24 2.69 16 18 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 19 C -0.14 -2.25 7.95 37.16 0.30 -1.95 16 20 N -0.60 -12.59 2.67 -164.54 -0.44 -13.03 16 21 C -0.26 -6.42 8.60 -15.06 -0.13 -6.55 16 22 H 0.09 2.38 6.42 -52.49 -0.34 2.05 16 23 C 0.03 0.90 5.26 -17.43 -0.09 0.81 16 24 N -0.90 -25.54 13.97 55.49 0.78 -24.77 16 25 Si 0.87 22.06 24.34 -169.99 -4.14 17.93 16 26 H -0.29 -7.40 6.62 56.52 0.37 -7.03 16 27 H -0.31 -8.01 7.11 56.52 0.40 -7.61 16 28 H -0.27 -6.77 6.61 56.52 0.37 -6.40 16 29 C 0.11 2.35 3.80 -3.56 -0.01 2.33 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.08 0.94 7.19 -51.93 -0.37 0.57 16 33 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.40 2.64 9.06 45.56 0.41 3.06 16 35 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.11 2.44 6.63 -51.93 -0.34 2.09 16 38 H 0.40 5.96 6.76 -40.82 -0.28 5.68 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.81 6.40 -51.93 -0.33 0.48 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 1.20 7.65 -51.93 -0.40 0.80 16 45 H 0.06 0.98 7.42 -51.93 -0.39 0.59 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.03 0.67 7.01 -51.93 -0.36 0.31 16 48 H 0.08 1.96 4.67 -51.93 -0.24 1.72 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -31.80 375.56 -7.40 -39.20 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.45 Total: 9.37 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -2.29 Total: 3.84 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.03 Total: -58.34 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.16 Total: -17.66 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.14 Total: 17.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.80 -7.40 -39.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072095342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.047 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds