Wall clock time and date at job start Tue Mar 31 2020 17:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37997 * 120.81820 * 2 1 4 4 C 1.39127 * 119.26497 * 179.97438 * 3 2 1 5 5 O 1.35500 * 119.52436 * 179.97438 * 4 3 2 6 6 N 1.32429 * 120.94937 * 359.97438 * 4 3 2 7 7 C 1.31643 * 121.79914 * 359.70133 * 6 4 3 8 8 C 1.50709 * 119.68714 * 180.29040 * 7 6 4 9 9 C 1.39558 * 120.62289 * 0.58569 * 7 6 4 10 10 C 1.47618 * 120.49656 * 179.70546 * 9 7 6 11 11 O 1.21583 * 119.99785 * 269.71861 * 10 9 7 12 12 N 1.34770 * 120.00486 * 89.72249 * 10 9 7 13 13 C 1.46498 * 120.00538 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.52677 * 325.08561 * 13 12 10 15 15 C 1.53041 * 109.50290 * 204.99758 * 13 12 10 16 16 C 1.53036 * 109.54013 * 301.41986 * 15 13 12 17 17 C 1.53194 * 109.30816 * 298.63279 * 16 15 13 18 18 H 1.09007 * 109.58421 * 294.84403 * 17 16 15 19 19 C 1.53005 * 109.58419 * 174.56610 * 17 16 15 20 20 N 1.46923 * 108.89957 * 54.70637 * 17 16 15 21 21 C 1.36939 * 120.63124 * 126.32064 * 20 17 16 22 22 H 1.07999 * 119.99866 * 330.16207 * 21 20 17 23 23 C 1.38814 * 119.99847 * 150.16138 * 21 20 17 24 24 N 1.31612 * 120.00198 * 161.75469 * 23 21 20 25 25 Si 1.86806 * 119.99864 * 341.75062 * 23 21 20 26 26 H 1.48500 * 109.47035 * 91.94399 * 25 23 21 27 27 H 1.48496 * 109.46873 * 211.94648 * 25 23 21 28 28 H 1.48507 * 109.47127 * 331.94887 * 25 23 21 29 29 C 1.47207 * 118.55060 * 306.46451 * 20 17 16 30 30 H 1.09004 * 109.46781 * 270.02256 * 1 2 3 31 31 H 1.09001 * 109.47345 * 30.02385 * 1 2 3 32 32 H 1.09001 * 109.46892 * 150.02647 * 1 2 3 33 33 H 1.08003 * 120.37227 * 359.95696 * 3 2 1 34 34 H 0.96700 * 113.99790 * 90.00367 * 5 4 3 35 35 H 1.08994 * 109.46998 * 270.29030 * 8 7 6 36 36 H 1.08995 * 109.46991 * 30.29003 * 8 7 6 37 37 H 1.08996 * 109.46816 * 150.29145 * 8 7 6 38 38 H 0.97001 * 119.99527 * 359.97438 * 12 10 9 39 39 H 1.08997 * 109.45983 * 181.39162 * 15 13 12 40 40 H 1.09001 * 109.45432 * 61.43925 * 15 13 12 41 41 H 1.08994 * 109.49776 * 178.68290 * 16 15 13 42 42 H 1.08997 * 109.49920 * 58.57869 * 16 15 13 43 43 H 1.08997 * 109.47082 * 60.28246 * 19 17 16 44 44 H 1.08996 * 109.47220 * 180.27831 * 19 17 16 45 45 H 1.08998 * 109.46918 * 300.28201 * 19 17 16 46 46 H 0.97001 * 119.99787 * 180.02562 * 24 23 21 47 47 H 1.09003 * 109.55734 * 293.69254 * 29 20 17 48 48 H 1.09003 * 109.64455 * 173.39588 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1474 0.0005 5 8 4.3042 2.3079 0.0000 6 7 4.2548 -0.0064 0.0016 7 6 3.6205 -1.1599 0.0079 8 6 4.4081 -2.4448 0.0154 9 6 2.2256 -1.2042 0.0016 10 6 1.5172 -2.4994 0.0023 11 8 1.2259 -3.0334 -1.0504 12 7 1.1934 -3.0898 1.1696 13 6 0.4899 -4.3749 1.1703 14 1 -0.2006 -4.4126 0.3278 15 6 -0.2904 -4.5295 2.4777 16 6 0.6742 -4.4438 3.6627 17 6 1.6930 -5.5841 3.5699 18 1 1.1826 -6.5404 3.6847 19 6 2.7411 -5.4265 4.6735 20 7 2.3491 -5.5305 2.2564 21 6 3.7145 -5.4933 2.1595 22 1 4.2992 -5.0350 2.9434 23 6 4.3471 -6.0447 1.0537 24 7 5.5880 -5.7099 0.7705 25 14 3.4370 -7.2620 -0.0324 26 1 2.7686 -6.5333 -1.1404 27 1 4.4016 -8.2410 -0.5946 28 1 2.4172 -7.9791 0.7745 29 6 1.5066 -5.5144 1.0494 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6935 2.1315 -0.0007 34 1 4.5069 2.6453 0.8833 35 1 4.6027 -2.7576 -1.0103 36 1 5.3544 -2.2878 0.5331 37 1 3.8369 -3.2181 0.5290 38 1 1.4262 -2.6639 2.0095 39 1 -0.7936 -5.4963 2.4881 40 1 -1.0315 -3.7339 2.5545 41 1 0.1148 -4.5306 4.5941 42 1 1.1959 -3.4871 3.6388 43 1 2.2518 -5.4616 5.6469 44 1 3.4677 -6.2358 4.6028 45 1 3.2502 -4.4698 4.5571 46 1 6.0299 -6.0949 -0.0024 47 1 0.9811 -6.4650 0.9585 48 1 2.1301 -5.3560 0.1694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072095342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:11 Heat of formation + Delta-G solvation = -47.451397 kcal Electronic energy + Delta-G solvation = -31016.655278 eV Core-core repulsion = 27071.288470 eV Total energy + Delta-G solvation = -3945.366808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07150 -40.80378 -39.32195 -38.10530 -35.83703 -35.34858 -34.48287 -33.14806 -32.48891 -31.86843 -29.04570 -28.84395 -27.88860 -26.55511 -24.95943 -24.22323 -22.43225 -22.28565 -21.84830 -20.49018 -19.47291 -18.95679 -18.37240 -18.27273 -17.30694 -16.98078 -16.63453 -16.29111 -15.82324 -15.52860 -15.21748 -15.12617 -14.98284 -14.71042 -14.43032 -14.25370 -14.24031 -14.14241 -13.86881 -13.78075 -13.41508 -13.28338 -13.17769 -13.12126 -12.89859 -12.61151 -12.59241 -12.48731 -12.35278 -12.12840 -11.77987 -11.62313 -11.36115 -11.20375 -11.08744 -10.64504 -10.61403 -10.48783 -10.05126 -9.89029 -8.72444 -8.04852 -5.34675 -0.30480 0.06109 1.30654 1.37288 1.41793 1.47991 2.12332 2.41598 2.47127 2.59111 3.14828 3.38405 3.39707 3.49174 3.66481 3.93187 3.97596 4.05143 4.15588 4.23028 4.32995 4.34639 4.47139 4.55656 4.56712 4.59219 4.61195 4.69191 4.70500 4.82831 4.89851 4.92424 4.99664 5.02480 5.05409 5.13805 5.14355 5.22765 5.25968 5.30665 5.45681 5.55398 5.56445 5.66832 6.00903 6.29053 6.51767 6.57377 6.83007 7.03270 7.18734 7.75704 8.17481 9.12413 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.005046 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.434305 B = 5548.049007 C = 6302.021554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.013 3.987 3 C -0.184 4.184 4 C 0.325 3.675 5 O -0.485 6.485 6 N -0.537 5.537 7 C 0.188 3.812 8 C -0.092 4.092 9 C -0.207 4.207 10 C 0.578 3.422 11 O -0.581 6.581 12 N -0.681 5.681 13 C 0.130 3.870 14 H 0.081 0.919 15 C -0.108 4.108 16 C -0.122 4.122 17 C 0.159 3.841 18 H 0.035 0.965 19 C -0.129 4.129 20 N -0.607 5.607 21 C -0.217 4.217 22 H 0.072 0.928 23 C -0.015 4.015 24 N -0.939 5.939 25 Si 0.911 3.089 26 H -0.303 1.303 27 H -0.321 1.321 28 H -0.261 1.261 29 C 0.110 3.890 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.057 0.943 33 H 0.186 0.814 34 H 0.424 0.576 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.408 0.592 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.034 0.966 45 H 0.043 0.957 46 H 0.252 0.748 47 H 0.031 0.969 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.114 14.408 7.430 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.005 3.995 3 C -0.204 4.204 4 C 0.146 3.854 5 O -0.296 6.296 6 N -0.258 5.258 7 C 0.050 3.950 8 C -0.149 4.149 9 C -0.212 4.212 10 C 0.364 3.636 11 O -0.462 6.462 12 N -0.331 5.331 13 C 0.024 3.976 14 H 0.099 0.901 15 C -0.146 4.146 16 C -0.161 4.161 17 C 0.054 3.946 18 H 0.053 0.947 19 C -0.187 4.187 20 N -0.333 5.333 21 C -0.347 4.347 22 H 0.090 0.910 23 C -0.211 4.211 24 N -0.585 5.585 25 Si 0.744 3.256 26 H -0.231 1.231 27 H -0.250 1.250 28 H -0.185 1.185 29 C -0.016 4.016 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.204 0.796 34 H 0.286 0.714 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.245 0.755 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.049 0.951 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.339 14.000 6.071 20.939 hybrid contribution 0.204 -1.075 -0.608 1.252 sum -14.135 12.925 5.463 19.917 Atomic orbital electron populations 1.21002 0.86929 1.04446 1.05014 1.20547 0.98449 0.89847 0.90666 1.22135 0.92672 1.00284 1.05322 1.19591 0.88136 0.84789 0.92885 1.84678 1.76012 1.32843 1.36088 1.66956 1.43076 0.98551 1.17170 1.21022 0.89870 0.92800 0.91301 1.20584 1.00552 0.91935 1.01838 1.20693 0.94392 0.94989 1.11121 1.18008 0.77465 0.84096 0.84040 1.90766 1.56153 1.66292 1.32968 1.45805 1.57728 1.21700 1.07822 1.21470 0.93136 0.82515 1.00448 0.90144 1.21689 0.97334 1.04031 0.91545 1.21974 0.96829 0.98573 0.98739 1.20813 0.93115 0.96493 0.84178 0.94743 1.21730 0.98507 1.00907 0.97525 1.44580 1.01565 1.86292 1.00827 1.18730 0.81729 1.28672 1.05530 0.91015 1.25624 0.95435 1.00404 0.99612 1.69876 1.13609 1.46247 1.28804 0.86479 0.77873 0.81440 0.79812 1.23142 1.25050 1.18504 1.21744 0.93536 0.96213 0.90118 0.87332 0.87527 0.92436 0.79646 0.71404 0.92551 0.90999 0.90093 0.75456 0.89733 0.88805 0.88615 0.92282 0.90387 0.94659 0.93813 0.93840 0.95082 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 9.69 71.24 0.69 -1.27 16 2 C 0.01 0.31 5.95 -19.44 -0.12 0.20 16 3 C -0.18 -3.82 9.72 22.43 0.22 -3.60 16 4 C 0.32 8.69 7.74 84.82 0.66 9.34 16 5 O -0.49 -10.26 13.55 -88.01 -1.19 -11.45 16 6 N -0.54 -18.93 10.28 -295.89 -3.04 -21.97 16 7 C 0.19 7.12 6.82 42.91 0.29 7.42 16 8 C -0.09 -4.09 9.78 71.24 0.70 -3.39 16 9 C -0.21 -6.89 5.65 -20.00 -0.11 -7.01 16 10 C 0.58 21.30 4.29 86.72 0.37 21.68 16 11 O -0.58 -26.24 16.77 -3.98 -0.07 -26.31 16 12 N -0.68 -21.58 4.91 -445.26 -2.19 -23.76 16 13 C 0.13 4.14 2.81 45.07 0.13 4.27 16 14 H 0.08 2.61 7.58 -2.39 -0.02 2.59 16 15 C -0.11 -2.37 5.59 30.62 0.17 -2.20 16 16 C -0.12 -2.79 5.21 30.67 0.16 -2.63 16 17 C 0.16 5.10 3.49 44.98 0.16 5.26 16 18 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 19 C -0.13 -4.06 7.95 71.98 0.57 -3.49 16 20 N -0.61 -25.55 2.67 -674.49 -1.80 -27.35 16 21 C -0.22 -11.13 8.60 84.03 0.72 -10.40 16 22 H 0.07 3.95 6.42 -2.91 -0.02 3.94 16 23 C -0.02 -0.87 5.26 84.86 0.45 -0.42 16 24 N -0.94 -56.84 13.97 21.65 0.30 -56.54 16 25 Si 0.91 48.17 24.34 68.60 1.67 49.84 16 26 H -0.30 -16.67 6.62 99.48 0.66 -16.01 16 27 H -0.32 -17.55 7.11 99.48 0.71 -16.84 16 28 H -0.26 -13.00 6.61 99.48 0.66 -12.34 16 29 C 0.11 4.60 3.80 86.31 0.33 4.93 16 30 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.11 1.18 8.10 -2.39 -0.02 1.16 16 32 H 0.06 1.24 7.19 -2.39 -0.02 1.22 16 33 H 0.19 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.42 4.24 9.06 -74.06 -0.67 3.57 16 35 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.07 3.26 8.14 -2.39 -0.02 3.25 16 37 H 0.08 3.98 6.63 -2.39 -0.02 3.96 16 38 H 0.41 11.45 6.76 -92.71 -0.63 10.82 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.06 1.38 6.40 -2.39 -0.02 1.37 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.03 1.29 7.65 -2.39 -0.02 1.27 16 45 H 0.04 1.47 7.42 -2.39 -0.02 1.45 16 46 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 47 H 0.03 1.30 7.01 -2.39 -0.02 1.28 16 48 H 0.04 1.92 4.67 -2.39 -0.01 1.91 16 Total: -1.00 -76.76 375.56 -1.33 -78.08 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.39 Total: 20.79 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 5.38 Total: 18.67 kcal Atomic # 7 Polarization: -122.90 SS G_CDS: -6.73 Total: -129.63 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -1.26 Total: -37.76 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 1.67 Total: 49.84 kcal Total: -76.76 -1.33 -78.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072095342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.633 kcal (2) G-P(sol) polarization free energy of solvation -76.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds