Wall clock time and date at job start Tue Mar 31 2020 17:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37993 * 120.82142 * 2 1 4 4 C 1.39129 * 119.26681 * 180.02562 * 3 2 1 5 5 O 1.35502 * 119.52442 * 179.97438 * 4 3 2 6 6 N 1.32435 * 120.94524 * 359.74362 * 4 3 2 7 7 C 1.31635 * 121.80295 * 0.52325 * 6 4 3 8 8 C 1.50694 * 119.69036 * 179.75434 * 7 6 4 9 9 C 1.39563 * 120.62335 * 359.48141 * 7 6 4 10 10 C 1.47619 * 120.50107 * 180.23092 * 9 7 6 11 11 O 1.21577 * 120.00167 * 89.99631 * 10 9 7 12 12 N 1.34777 * 119.99791 * 270.00272 * 10 9 7 13 13 C 1.46503 * 119.99853 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.49734 * 34.93249 * 13 12 10 15 15 C 1.53037 * 109.49641 * 154.99491 * 13 12 10 16 16 C 1.53046 * 109.53704 * 58.58992 * 15 13 12 17 17 C 1.53193 * 109.31391 * 61.36247 * 16 15 13 18 18 H 1.08997 * 109.58651 * 65.29049 * 17 16 15 19 19 C 1.52998 * 109.58952 * 185.57870 * 17 16 15 20 20 N 1.46925 * 108.77303 * 305.36707 * 17 16 15 21 21 C 1.36940 * 120.63071 * 233.58249 * 20 17 16 22 22 H 1.08005 * 119.99592 * 30.94191 * 21 20 17 23 23 C 1.38813 * 120.00448 * 210.93903 * 21 20 17 24 24 N 1.31619 * 119.99637 * 12.30086 * 23 21 20 25 25 Si 1.86801 * 120.00220 * 192.29882 * 23 21 20 26 26 H 1.48502 * 109.46890 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46832 * 120.00118 * 25 23 21 28 28 H 1.48500 * 109.47188 * 240.00492 * 25 23 21 29 29 C 1.46929 * 118.74254 * 53.60706 * 20 17 16 30 30 H 1.09005 * 109.46603 * 269.97427 * 1 2 3 31 31 H 1.08997 * 109.47251 * 29.97418 * 1 2 3 32 32 H 1.08995 * 109.46714 * 149.97977 * 1 2 3 33 33 H 1.08007 * 120.36561 * 359.97438 * 3 2 1 34 34 H 0.96703 * 113.99946 * 89.99925 * 5 4 3 35 35 H 1.09005 * 109.47094 * 269.73296 * 8 7 6 36 36 H 1.09000 * 109.46963 * 29.72809 * 8 7 6 37 37 H 1.09000 * 109.47554 * 149.72860 * 8 7 6 38 38 H 0.97002 * 120.00190 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.45863 * 178.60820 * 15 13 12 40 40 H 1.08993 * 109.46543 * 298.58033 * 15 13 12 41 41 H 1.09003 * 109.49924 * 181.31313 * 16 15 13 42 42 H 1.08995 * 109.49481 * 301.41105 * 16 15 13 43 43 H 1.08999 * 109.46712 * 59.99852 * 19 17 16 44 44 H 1.08997 * 109.47248 * 179.97438 * 19 17 16 45 45 H 1.09005 * 109.47026 * 300.00153 * 19 17 16 46 46 H 0.96999 * 120.00140 * 179.97438 * 24 23 21 47 47 H 1.08997 * 109.58608 * 186.60341 * 29 20 17 48 48 H 1.09004 * 109.58319 * 66.18102 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6049 1.1473 -0.0005 5 8 4.3044 2.3078 -0.0011 6 7 4.2548 -0.0066 0.0040 7 6 3.6206 -1.1601 -0.0010 8 6 4.4080 -2.4449 -0.0010 9 6 2.2256 -1.2044 -0.0005 10 6 1.5171 -2.4994 -0.0010 11 8 1.2258 -3.0334 1.0517 12 7 1.1934 -3.0899 -1.1685 13 6 0.4907 -4.3755 -1.1690 14 1 -0.1996 -4.4131 -0.3262 15 6 -0.2900 -4.5303 -2.4761 16 6 0.6743 -4.4440 -3.6614 17 6 1.6938 -5.5837 -3.5692 18 1 1.1843 -6.5401 -3.6863 19 6 2.7434 -5.4234 -4.6708 20 7 2.3473 -5.5283 -2.2545 21 6 3.7125 -5.4910 -2.1549 22 1 4.2977 -5.0179 -2.9297 23 6 4.3444 -6.0611 -1.0583 24 7 3.6689 -6.8421 -0.2422 25 14 6.1534 -5.7199 -0.7408 26 1 6.6794 -4.8173 -1.7962 27 1 6.3094 -5.0725 0.5865 28 1 6.9090 -6.9981 -0.7602 29 6 1.5082 -5.5143 -1.0484 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3632 -0.8898 -0.5141 33 1 1.6935 2.1314 -0.0004 34 1 4.5077 2.6449 0.8822 35 1 4.5976 -2.7548 -1.0288 36 1 5.3569 -2.2894 0.5125 37 1 3.8394 -3.2197 0.5131 38 1 1.4256 -2.6638 -2.0084 39 1 -0.7925 -5.4975 -2.4865 40 1 -1.0314 -3.7351 -2.5527 41 1 0.1146 -4.5310 -4.5928 42 1 1.1953 -3.4870 -3.6376 43 1 3.2551 -4.4687 -4.5489 44 1 3.4680 -6.2348 -4.6032 45 1 2.2550 -5.4521 -5.6449 46 1 4.1105 -7.2409 0.5239 47 1 2.1334 -5.3543 -0.1701 48 1 0.9832 -6.4652 -0.9575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072095343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:17 Heat of formation + Delta-G solvation = -26.076412 kcal Electronic energy + Delta-G solvation = -30962.624350 eV Core-core repulsion = 27018.184431 eV Total energy + Delta-G solvation = -3944.439919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.84314 -39.30707 -37.76304 -36.94590 -34.29385 -34.11196 -32.77249 -31.82049 -30.45369 -29.87483 -28.11363 -27.56458 -26.18559 -24.98263 -23.66349 -22.18314 -21.28233 -20.97490 -20.36455 -18.76066 -18.48063 -17.58740 -17.14879 -16.35689 -15.75838 -15.42310 -15.18355 -14.38272 -14.18174 -14.04089 -13.81278 -13.73504 -13.55921 -13.30990 -13.20445 -13.02663 -12.92077 -12.67861 -12.50514 -12.08503 -12.07265 -11.89534 -11.70422 -11.54999 -11.23944 -11.17485 -10.95439 -10.89705 -10.71194 -10.39633 -10.32225 -9.97060 -9.81537 -9.57099 -9.53723 -9.47523 -9.24591 -8.70543 -8.47233 -8.42267 -6.58529 -5.76134 -3.22561 0.81460 1.14025 2.99599 3.32220 3.35658 3.44497 3.46290 3.56553 3.80199 4.47860 4.48316 4.53769 4.96230 5.00610 5.15553 5.29311 5.31485 5.35380 5.41813 5.43891 5.49295 5.54607 5.57471 5.65925 5.83170 5.98838 6.07025 6.09071 6.10314 6.15153 6.22290 6.31193 6.33295 6.34641 6.42935 6.49654 6.59145 6.65149 6.69104 6.87063 7.03934 7.11085 7.35799 7.36140 7.68767 7.82750 7.90875 8.02408 8.49069 8.68002 9.23145 9.86286 10.43821 11.31646 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.005408 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.515567 B = 5176.427610 C = 6468.079557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.006 3.994 3 C -0.203 4.203 4 C 0.325 3.675 5 O -0.483 6.483 6 N -0.508 5.508 7 C 0.206 3.794 8 C -0.115 4.115 9 C -0.185 4.185 10 C 0.572 3.428 11 O -0.536 6.536 12 N -0.690 5.690 13 C 0.116 3.884 14 H 0.076 0.924 15 C -0.118 4.118 16 C -0.131 4.131 17 C 0.166 3.834 18 H 0.025 0.975 19 C -0.135 4.135 20 N -0.582 5.582 21 C -0.248 4.248 22 H 0.067 0.933 23 C 0.011 3.989 24 N -0.898 5.898 25 Si 0.883 3.117 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.292 1.292 29 C 0.163 3.837 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.142 0.858 34 H 0.400 0.600 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.396 0.604 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.036 0.964 46 H 0.253 0.747 47 H 0.098 0.902 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 13.699 -2.057 15.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.002 4.002 3 C -0.224 4.224 4 C 0.146 3.854 5 O -0.290 6.290 6 N -0.228 5.228 7 C 0.068 3.932 8 C -0.172 4.172 9 C -0.190 4.190 10 C 0.356 3.644 11 O -0.413 6.413 12 N -0.339 5.339 13 C 0.010 3.990 14 H 0.094 0.906 15 C -0.156 4.156 16 C -0.170 4.170 17 C 0.059 3.941 18 H 0.042 0.958 19 C -0.193 4.193 20 N -0.305 5.305 21 C -0.377 4.377 22 H 0.085 0.915 23 C -0.188 4.188 24 N -0.543 5.543 25 Si 0.712 3.288 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.219 1.219 29 C 0.036 3.964 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.160 0.840 34 H 0.258 0.742 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.231 0.769 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.116 0.884 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.451 13.212 -1.772 14.809 hybrid contribution 0.413 0.500 0.330 0.728 sum -6.037 13.712 -1.442 15.051 Atomic orbital electron populations 1.20894 0.89556 1.03628 1.03573 1.20168 0.96773 0.90957 0.92312 1.21765 0.93695 0.99086 1.07858 1.19256 0.87010 0.85067 0.94026 1.84715 1.76131 1.34246 1.33907 1.67038 1.41942 0.97827 1.16015 1.21252 0.89408 0.93093 0.89451 1.20984 1.00033 0.91106 1.05093 1.20843 0.94955 0.94708 1.08519 1.17677 0.78622 0.83583 0.84563 1.90802 1.54215 1.64988 1.31287 1.45896 1.58204 1.22313 1.07525 1.21864 0.95162 0.84934 0.96992 0.90572 1.21684 0.97314 1.01548 0.95037 1.22071 0.97809 1.00558 0.96586 1.20453 0.92046 0.94112 0.87478 0.95787 1.21792 0.99263 1.02241 0.96001 1.44023 1.02225 1.85620 0.98659 1.19082 0.81856 1.29968 1.06831 0.91540 1.25058 0.96956 0.96979 0.99823 1.69958 1.35344 1.32400 1.16549 0.86552 0.86090 0.77785 0.78334 1.20035 1.21098 1.21866 1.21183 0.91379 0.91605 0.92222 0.89811 0.90530 0.90589 0.84021 0.74240 0.88353 0.90495 0.89115 0.76896 0.91050 0.93100 0.92901 0.92746 0.92979 0.92053 0.94511 0.93667 0.88399 0.95654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.69 36.01 0.35 -0.92 16 2 C 0.01 0.08 5.95 -103.96 -0.62 -0.54 16 3 C -0.20 -2.45 9.72 -39.34 -0.38 -2.84 16 4 C 0.33 4.55 7.74 -16.96 -0.13 4.42 16 5 O -0.48 -5.56 13.55 -18.20 -0.25 -5.81 16 6 N -0.51 -8.55 10.28 -9.20 -0.09 -8.65 16 7 C 0.21 3.63 6.82 -82.19 -0.56 3.07 16 8 C -0.12 -2.19 9.69 36.00 0.35 -1.84 16 9 C -0.18 -3.06 5.65 -104.82 -0.59 -3.65 16 10 C 0.57 10.50 4.29 -12.43 -0.05 10.45 16 11 O -0.54 -11.74 16.76 5.30 0.09 -11.65 16 12 N -0.69 -11.74 4.91 -54.71 -0.27 -12.01 16 13 C 0.12 2.08 2.81 -67.81 -0.19 1.89 16 14 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 15 C -0.12 -1.74 5.59 -26.69 -0.15 -1.89 16 16 C -0.13 -1.99 5.21 -26.61 -0.14 -2.12 16 17 C 0.17 3.12 3.50 -67.60 -0.24 2.88 16 18 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 19 C -0.14 -2.38 7.96 37.16 0.30 -2.08 16 20 N -0.58 -13.04 2.90 -164.78 -0.48 -13.51 16 21 C -0.25 -6.15 8.56 -15.06 -0.13 -6.28 16 22 H 0.07 1.64 6.25 -52.48 -0.33 1.32 16 23 C 0.01 0.29 5.01 -17.43 -0.09 0.20 16 24 N -0.90 -25.24 11.11 55.49 0.62 -24.62 16 25 Si 0.88 21.04 29.48 -169.99 -5.01 16.03 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 C 0.16 3.66 4.86 -3.71 -0.02 3.65 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.08 0.86 7.18 -51.93 -0.37 0.49 16 33 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.40 2.51 9.06 45.56 0.41 2.93 16 35 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.09 1.95 7.06 -51.93 -0.37 1.58 16 38 H 0.40 6.27 6.76 -40.82 -0.28 5.99 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.82 6.40 -51.93 -0.33 0.49 16 43 H 0.05 0.92 7.39 -51.93 -0.38 0.54 16 44 H 0.06 1.18 7.67 -51.93 -0.40 0.79 16 45 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.10 2.60 6.12 -51.93 -0.32 2.28 16 48 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -31.21 382.59 -8.46 -39.68 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.54 Total: 10.39 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.29 Total: 4.39 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.22 Total: -58.79 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.16 Total: -17.46 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.01 Total: 16.03 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.21 -8.46 -39.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072095343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.599 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds