Wall clock time and date at job start Tue Mar 31 2020 17:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37993 * 120.82142 * 2 1 4 4 C 1.39129 * 119.26681 * 180.02562 * 3 2 1 5 5 O 1.35502 * 119.52442 * 179.97438 * 4 3 2 6 6 N 1.32435 * 120.94524 * 359.74362 * 4 3 2 7 7 C 1.31635 * 121.80295 * 0.52325 * 6 4 3 8 8 C 1.50694 * 119.69036 * 179.75434 * 7 6 4 9 9 C 1.39563 * 120.62335 * 359.48141 * 7 6 4 10 10 C 1.47619 * 120.50107 * 180.23092 * 9 7 6 11 11 O 1.21577 * 120.00167 * 89.99631 * 10 9 7 12 12 N 1.34777 * 119.99791 * 270.00272 * 10 9 7 13 13 C 1.46503 * 119.99853 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.49734 * 34.93249 * 13 12 10 15 15 C 1.53037 * 109.49641 * 154.99491 * 13 12 10 16 16 C 1.53046 * 109.53704 * 58.58992 * 15 13 12 17 17 C 1.53193 * 109.31391 * 61.36247 * 16 15 13 18 18 H 1.08997 * 109.58651 * 65.29049 * 17 16 15 19 19 C 1.52998 * 109.58952 * 185.57870 * 17 16 15 20 20 N 1.46925 * 108.77303 * 305.36707 * 17 16 15 21 21 C 1.36940 * 120.63071 * 233.58249 * 20 17 16 22 22 H 1.08005 * 119.99592 * 30.94191 * 21 20 17 23 23 C 1.38813 * 120.00448 * 210.93903 * 21 20 17 24 24 N 1.31619 * 119.99637 * 12.30086 * 23 21 20 25 25 Si 1.86801 * 120.00220 * 192.29882 * 23 21 20 26 26 H 1.48502 * 109.46890 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46832 * 120.00118 * 25 23 21 28 28 H 1.48500 * 109.47188 * 240.00492 * 25 23 21 29 29 C 1.46929 * 118.74254 * 53.60706 * 20 17 16 30 30 H 1.09005 * 109.46603 * 269.97427 * 1 2 3 31 31 H 1.08997 * 109.47251 * 29.97418 * 1 2 3 32 32 H 1.08995 * 109.46714 * 149.97977 * 1 2 3 33 33 H 1.08007 * 120.36561 * 359.97438 * 3 2 1 34 34 H 0.96703 * 113.99946 * 89.99925 * 5 4 3 35 35 H 1.09005 * 109.47094 * 269.73296 * 8 7 6 36 36 H 1.09000 * 109.46963 * 29.72809 * 8 7 6 37 37 H 1.09000 * 109.47554 * 149.72860 * 8 7 6 38 38 H 0.97002 * 120.00190 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.45863 * 178.60820 * 15 13 12 40 40 H 1.08993 * 109.46543 * 298.58033 * 15 13 12 41 41 H 1.09003 * 109.49924 * 181.31313 * 16 15 13 42 42 H 1.08995 * 109.49481 * 301.41105 * 16 15 13 43 43 H 1.08999 * 109.46712 * 59.99852 * 19 17 16 44 44 H 1.08997 * 109.47248 * 179.97438 * 19 17 16 45 45 H 1.09005 * 109.47026 * 300.00153 * 19 17 16 46 46 H 0.96999 * 120.00140 * 179.97438 * 24 23 21 47 47 H 1.08997 * 109.58608 * 186.60341 * 29 20 17 48 48 H 1.09004 * 109.58319 * 66.18102 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6049 1.1473 -0.0005 5 8 4.3044 2.3078 -0.0011 6 7 4.2548 -0.0066 0.0040 7 6 3.6206 -1.1601 -0.0010 8 6 4.4080 -2.4449 -0.0010 9 6 2.2256 -1.2044 -0.0005 10 6 1.5171 -2.4994 -0.0010 11 8 1.2258 -3.0334 1.0517 12 7 1.1934 -3.0899 -1.1685 13 6 0.4907 -4.3755 -1.1690 14 1 -0.1996 -4.4131 -0.3262 15 6 -0.2900 -4.5303 -2.4761 16 6 0.6743 -4.4440 -3.6614 17 6 1.6938 -5.5837 -3.5692 18 1 1.1843 -6.5401 -3.6863 19 6 2.7434 -5.4234 -4.6708 20 7 2.3473 -5.5283 -2.2545 21 6 3.7125 -5.4910 -2.1549 22 1 4.2977 -5.0179 -2.9297 23 6 4.3444 -6.0611 -1.0583 24 7 3.6689 -6.8421 -0.2422 25 14 6.1534 -5.7199 -0.7408 26 1 6.6794 -4.8173 -1.7962 27 1 6.3094 -5.0725 0.5865 28 1 6.9090 -6.9981 -0.7602 29 6 1.5082 -5.5143 -1.0484 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3632 -0.8898 -0.5141 33 1 1.6935 2.1314 -0.0004 34 1 4.5077 2.6449 0.8822 35 1 4.5976 -2.7548 -1.0288 36 1 5.3569 -2.2894 0.5125 37 1 3.8394 -3.2197 0.5131 38 1 1.4256 -2.6638 -2.0084 39 1 -0.7925 -5.4975 -2.4865 40 1 -1.0314 -3.7351 -2.5527 41 1 0.1146 -4.5310 -4.5928 42 1 1.1953 -3.4870 -3.6376 43 1 3.2551 -4.4687 -4.5489 44 1 3.4680 -6.2348 -4.6032 45 1 2.2550 -5.4521 -5.6449 46 1 4.1105 -7.2409 0.5239 47 1 2.1334 -5.3543 -0.1701 48 1 0.9832 -6.4652 -0.9575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072095343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:15 Heat of formation + Delta-G solvation = -50.239769 kcal Electronic energy + Delta-G solvation = -30963.672151 eV Core-core repulsion = 27018.184431 eV Total energy + Delta-G solvation = -3945.487721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.05010 -40.69270 -39.17927 -38.09028 -35.76083 -35.36617 -34.49056 -33.13238 -31.88659 -31.63941 -29.05902 -28.89416 -27.79571 -26.69596 -24.88798 -23.82447 -22.47215 -22.28492 -21.86960 -20.35314 -19.49394 -18.90521 -18.26952 -18.17588 -17.19198 -16.77551 -16.66639 -15.90734 -15.73751 -15.46293 -15.21634 -15.18234 -14.85671 -14.63003 -14.41177 -14.30963 -14.16762 -14.00657 -13.83162 -13.61875 -13.41939 -13.13932 -12.97876 -12.92682 -12.81575 -12.62711 -12.59118 -12.51379 -12.39849 -12.09432 -12.03409 -11.55261 -11.24782 -11.11783 -11.02313 -10.62694 -10.54606 -10.47370 -9.96839 -9.88252 -8.50042 -7.78229 -5.24580 -0.31376 0.04475 1.39083 1.44653 1.50045 1.55469 2.22844 2.30631 2.51360 2.63168 3.35790 3.39035 3.47403 3.67079 3.70978 3.97314 4.05597 4.13281 4.20675 4.22175 4.30813 4.36902 4.51551 4.53747 4.55321 4.66496 4.67700 4.76841 4.83181 4.85022 4.95532 4.99821 5.05506 5.08167 5.11474 5.14222 5.16475 5.29391 5.35716 5.42299 5.58690 5.64208 5.70583 5.77587 5.80799 6.49846 6.54816 6.60121 6.79489 7.24314 7.26838 7.97329 8.48649 9.27042 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.005408 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.515567 B = 5176.427610 C = 6468.079557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.012 3.988 3 C -0.182 4.182 4 C 0.325 3.675 5 O -0.484 6.484 6 N -0.534 5.534 7 C 0.188 3.812 8 C -0.102 4.102 9 C -0.203 4.203 10 C 0.576 3.424 11 O -0.580 6.580 12 N -0.679 5.679 13 C 0.126 3.874 14 H 0.070 0.930 15 C -0.109 4.109 16 C -0.120 4.120 17 C 0.155 3.845 18 H 0.014 0.986 19 C -0.128 4.128 20 N -0.593 5.593 21 C -0.227 4.227 22 H 0.071 0.929 23 C -0.039 4.039 24 N -0.934 5.934 25 Si 0.924 3.076 26 H -0.260 1.260 27 H -0.293 1.293 28 H -0.301 1.301 29 C 0.172 3.828 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.066 0.934 33 H 0.186 0.814 34 H 0.423 0.577 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.405 0.595 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.034 0.966 45 H 0.073 0.927 46 H 0.242 0.758 47 H 0.051 0.949 48 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.086 17.533 -4.311 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.004 3.996 3 C -0.202 4.202 4 C 0.147 3.853 5 O -0.295 6.295 6 N -0.255 5.255 7 C 0.050 3.950 8 C -0.160 4.160 9 C -0.208 4.208 10 C 0.361 3.639 11 O -0.460 6.460 12 N -0.328 5.328 13 C 0.020 3.980 14 H 0.088 0.912 15 C -0.147 4.147 16 C -0.159 4.159 17 C 0.049 3.951 18 H 0.032 0.968 19 C -0.186 4.186 20 N -0.317 5.317 21 C -0.358 4.358 22 H 0.089 0.911 23 C -0.234 4.234 24 N -0.581 5.581 25 Si 0.754 3.246 26 H -0.184 1.184 27 H -0.220 1.220 28 H -0.229 1.229 29 C 0.045 3.955 30 H 0.107 0.893 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.203 0.797 34 H 0.285 0.715 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.242 0.758 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.092 0.908 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -8.359 17.091 -4.077 19.458 hybrid contribution 1.005 -0.595 0.998 1.537 sum -7.354 16.496 -3.078 18.322 Atomic orbital electron populations 1.20997 0.87200 1.04990 1.04291 1.20532 0.98343 0.89971 0.90743 1.22132 0.92780 1.00209 1.05107 1.19541 0.88050 0.84794 0.92949 1.84675 1.75945 1.32837 1.36029 1.66934 1.42907 0.98438 1.17198 1.20850 0.89704 0.92708 0.91741 1.20700 0.99850 0.91698 1.03715 1.20715 0.94548 0.94905 1.10669 1.17995 0.77762 0.84084 0.84039 1.90772 1.56044 1.66345 1.32850 1.45785 1.57695 1.21632 1.07693 1.21593 0.93813 0.83469 0.99156 0.91226 1.21657 0.97390 1.03153 0.92471 1.21956 0.96913 0.98710 0.98289 1.20746 0.93213 0.95442 0.85654 0.96781 1.21721 0.98548 1.00926 0.97388 1.44218 1.01632 1.85603 1.00232 1.19306 0.83241 1.27443 1.05762 0.91128 1.25547 0.99449 0.97881 1.00527 1.70113 1.36251 1.34626 1.17159 0.85860 0.83368 0.77202 0.78142 1.18407 1.21997 1.22881 1.20861 0.91448 0.92314 0.90874 0.89292 0.86826 0.91535 0.79716 0.71477 0.89627 0.90499 0.92577 0.75850 0.90748 0.89431 0.89311 0.92206 0.93264 0.94657 0.90811 0.94875 0.93020 0.98498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 9.69 71.24 0.69 -1.36 16 2 C 0.01 0.29 5.95 -19.43 -0.12 0.17 16 3 C -0.18 -3.62 9.72 22.43 0.22 -3.40 16 4 C 0.33 8.17 7.74 84.82 0.66 8.82 16 5 O -0.48 -9.46 13.55 -88.03 -1.19 -10.65 16 6 N -0.53 -17.49 10.28 -295.89 -3.04 -20.54 16 7 C 0.19 6.68 6.82 42.91 0.29 6.97 16 8 C -0.10 -4.12 9.69 71.23 0.69 -3.43 16 9 C -0.20 -6.62 5.65 -19.99 -0.11 -6.73 16 10 C 0.58 21.55 4.29 86.72 0.37 21.92 16 11 O -0.58 -26.62 16.76 -3.96 -0.07 -26.69 16 12 N -0.68 -22.92 4.91 -445.26 -2.19 -25.11 16 13 C 0.13 4.51 2.81 45.07 0.13 4.64 16 14 H 0.07 2.61 7.58 -2.39 -0.02 2.59 16 15 C -0.11 -2.92 5.59 30.62 0.17 -2.75 16 16 C -0.12 -3.21 5.21 30.67 0.16 -3.05 16 17 C 0.15 5.63 3.50 44.97 0.16 5.78 16 18 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 19 C -0.13 -4.27 7.96 71.98 0.57 -3.69 16 20 N -0.59 -27.16 2.90 -675.23 -1.96 -29.12 16 21 C -0.23 -11.60 8.56 84.03 0.72 -10.88 16 22 H 0.07 3.53 6.25 -2.91 -0.02 3.51 16 23 C -0.04 -2.15 5.01 84.86 0.43 -1.72 16 24 N -0.93 -56.06 11.11 21.65 0.24 -55.82 16 25 Si 0.92 45.27 29.48 68.60 2.02 47.29 16 26 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 28 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 29 C 0.17 8.14 4.86 86.36 0.42 8.56 16 30 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.11 1.14 8.10 -2.39 -0.02 1.12 16 32 H 0.07 1.30 7.18 -2.39 -0.02 1.29 16 33 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.42 3.80 9.06 -74.06 -0.67 3.13 16 35 H 0.09 3.53 8.14 -2.38 -0.02 3.51 16 36 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.06 2.61 7.06 -2.39 -0.02 2.60 16 38 H 0.40 12.20 6.76 -92.71 -0.63 11.57 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.06 1.58 6.40 -2.39 -0.02 1.56 16 43 H 0.05 1.65 7.39 -2.39 -0.02 1.63 16 44 H 0.03 1.33 7.67 -2.39 -0.02 1.31 16 45 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 46 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 47 H 0.05 2.95 6.12 -2.39 -0.01 2.93 16 48 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 Total: -1.00 -74.32 382.59 -1.04 -75.37 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -0.30 Total: 25.42 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 5.44 Total: 19.84 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -6.95 Total: -130.58 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -1.26 Total: -37.34 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.02 Total: 47.29 kcal Total: -74.32 -1.04 -75.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072095343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.129 kcal (2) G-P(sol) polarization free energy of solvation -74.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds